Conservation of cofitness between PGA1_c34470 and PGA1_c10880 in Phaeobacter inhibens DSM 17395

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c34470 UDP-glucose 4-epimerase ExoB 1.0 PGA1_c10880 alanine racemase, biosynthetic 0.37 19
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0320 galE UDP-galactose 4-epimerase 0.19 Synpcc7942_2201 alr alanine racemase — —
Agrobacterium fabrum C58 0.52 Atu4166 UDP-glucose 4-epimerase 0.33 Atu1080 alanine racemase low > 89
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_02466 UDP-glucose 4-epimerase 0.31 CCNA_01733 alanine racemase low > 67
Caulobacter crescentus NA1000 0.51 CCNA_02466 UDP-glucose 4-epimerase 0.31 CCNA_01733 alanine racemase low > 66
Sinorhizobium meliloti 1021 0.49 SM_b20942 UDP glucose 4-epimerase 0.35 SMc00557 alanine racemase low > 103
Rhizobium sp. OAE497 0.49 ABIE40_RS18880 UDP-glucose 4-epimerase GalE 0.33 ABIE40_RS06295 alanine racemase low > 107
Pseudomonas fluorescens FW300-N2E3 0.49 AO353_21135 UDP-galactose-4-epimerase 0.22 AO353_09145 alanine racemase — —
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU1360 galE UDP-glucose 4-epimerase (TIGR) 0.20 DVU0955 alr alanine racemase (TIGR) — —
Fusobacterium nucleatum SB010 0.46 HUW76_00075 UDP-glucose 4-epimerase GalE 0.12 HUW76_08815 alanine racemase low > 35
Desulfovibrio vulgaris Miyazaki F 0.45 DvMF_0137 UDP-glucose 4-epimerase (RefSeq) 0.19 DvMF_1349 alanine racemase (RefSeq) low > 51
Azospirillum sp. SherDot2 0.44 MPMX19_06729 UDP-glucose 4-epimerase 0.31 MPMX19_06140 Alanine racemase, biosynthetic — —
Azospirillum brasilense Sp245 0.44 AZOBR_RS33555 UDP-glucose 4-epimerase 0.29 AZOBR_RS08350 alanine racemase — —
Pseudomonas putida KT2440 0.43 PP_3129 UDP-glucose 4-epimerase 0.22 PP_5269 alanine racemase, PLP-binding — —
Marinobacter adhaerens HP15 0.41 HP15_2048 UDP-glucose 4-epimerase 0.22 HP15_630 alanine racemase — —
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS17395 UDP-glucose 4-epimerase GalE 0.20 LRK54_RS00585 alanine racemase — —
Rhodanobacter denitrificans MT42 0.38 LRK55_RS17620 UDP-glucose 4-epimerase GalE 0.20 LRK55_RS00355 alanine racemase — —
Rhodopseudomonas palustris CGA009 0.38 TX73_023800 UDP-glucose 4-epimerase GalE 0.33 TX73_015960 alanine racemase — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_1305 UDP-glucose-4-epimerase GalE 0.24 Ga0059261_0986 alanine racemase — —
Vibrio cholerae E7946 ATCC 55056 0.36 CSW01_18045 UDP-glucose 4-epimerase GalE 0.23 CSW01_01955 alanine racemase — —
Pectobacterium carotovorum WPP14 0.36 HER17_RS14765 UDP-glucose 4-epimerase GalE 0.20 HER17_RS03655 alanine racemase low > 75
Pseudomonas stutzeri RCH2 0.36 Psest_0069 UDP-glucose-4-epimerase 0.23 Psest_0699 alanine racemase — —
Variovorax sp. OAS795 0.36 ABID97_RS05765 UDP-glucose 4-epimerase GalE 0.15 ABID97_RS03685 alanine racemase — —
Castellaniella sp019104865 MT123 0.35 ABCV34_RS10235 UDP-glucose 4-epimerase GalE 0.14 ABCV34_RS02335 alanine racemase — —
Dickeya dianthicola 67-19 0.35 HGI48_RS06635 UDP-glucose 4-epimerase GalE 0.20 HGI48_RS17565 alanine racemase 0.55 65
Dickeya dadantii 3937 0.35 DDA3937_RS06615 UDP-glucose 4-epimerase GalE 0.20 DDA3937_RS17510 alanine racemase — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS10045 UDP-glucose 4-epimerase 0.34 HSERO_RS19760 alanine racemase low > 78
Dickeya dianthicola ME23 0.35 DZA65_RS06990 UDP-glucose 4-epimerase GalE 0.20 DZA65_RS18650 alanine racemase 0.60 18
Acinetobacter radioresistens SK82 0.35 MPMX26_00066 UDP-glucose 4-epimerase 0.21 MPMX26_01153 Alanine racemase — —
Escherichia coli ECRC62 0.35 BNILDI_20120 galE UDP-glucose 4-epimerase GalE 0.22 BNILDI_06350 alr alanine racemase — —
Rahnella sp. WP5 0.35 EX31_RS23580 UDP-glucose 4-epimerase GalE 0.21 EX31_RS11885 alanine racemase low > 89
Pantoea sp. MT58 0.34 IAI47_07000 UDP-glucose 4-epimerase GalE 0.20 IAI47_08895 catabolic alanine racemase DadX — —
Bosea sp. OAE506 0.34 ABIE41_RS08585 UDP-glucose 4-epimerase GalE 0.29 ABIE41_RS17795 alanine racemase — —
Alteromonas macleodii MIT1002 0.34 MIT1002_00970 UDP-glucose 4-epimerase 0.21 MIT1002_00544 Alanine racemase — —
Serratia liquefaciens MT49 0.34 IAI46_05365 UDP-glucose 4-epimerase GalE 0.20 IAI46_22945 alanine racemase low > 86
Enterobacter asburiae PDN3 0.33 EX28DRAFT_2236 UDP-glucose-4-epimerase GalE 0.21 EX28DRAFT_4259 alanine racemase low > 76
Escherichia coli ECOR27 0.33 NOLOHH_23145 galE UDP-glucose 4-epimerase GalE 0.22 NOLOHH_05175 alr alanine racemase low > 57
Shewanella amazonensis SB2B 0.33 Sama_2224 UDP-glucose 4-epimerase (RefSeq) 0.21 Sama_3057 alr alanine racemase (RefSeq) — —
Enterobacter sp. TBS_079 0.33 MPMX20_01386 UDP-glucose 4-epimerase 0.21 MPMX20_00269 Alanine racemase, biosynthetic low > 85
Escherichia fergusonii Becca 0.33 EFB2_03347 UDP-glucose 4-epimerase 0.22 EFB2_04547 Alanine racemase, biosynthetic 0.71 64
Escherichia coli ECRC101 0.33 MCAODC_25935 galE UDP-glucose 4-epimerase GalE 0.22 MCAODC_03435 alr alanine racemase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_02954 UDP-glucose 4-epimerase 0.22 OHPLBJKB_03990 Alanine racemase, biosynthetic low > 73
Escherichia coli Nissle 1917 0.33 ECOLIN_RS04040 UDP-glucose 4-epimerase GalE 0.22 ECOLIN_RS23405 alanine racemase low > 52
Escherichia coli ECRC98 0.33 JDDGAC_10370 galT galactose-1-phosphate uridylyltransferase 0.22 JDDGAC_16560 alr alanine racemase — —
Escherichia coli ECOR38 0.33 HEPCGN_01560 galT galactose-1-phosphate uridylyltransferase 0.22 HEPCGN_11540 alr alanine racemase low > 85
Escherichia coli BW25113 0.33 b0759 galE UDP-galactose-4-epimerase (VIMSS) 0.22 b4053 alr alanine racemase (NCBI) low > 76
Escherichia coli ECRC99 0.33 KEDOAH_21250 galT galactose-1-phosphate uridylyltransferase 0.22 KEDOAH_15225 alr alanine racemase — —
Escherichia coli ECRC101 0.33 OKFHMN_06715 galT galactose-1-phosphate uridylyltransferase 0.22 OKFHMN_12925 alr alanine racemase — —
Escherichia coli ECRC102 0.33 NIAGMN_04765 galT galactose-1-phosphate uridylyltransferase 0.22 NIAGMN_10770 alr alanine racemase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF3323 UDP-glucose 4-epimerase (EC 5.1.3.2) 0.15 GFF1915 Alanine racemase (EC 5.1.1.1) — —
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.4678.1 UDP-glucose 4-epimerase (EC 5.1.3.2) 0.20 Xcc-8004.4620.1 Alanine racemase (EC 5.1.1.1) low > 74
Dechlorosoma suillum PS 0.33 Dsui_0398 UDP-glucose-4-epimerase 0.18 Dsui_2411 alanine racemase — —
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_2704 UDP-galactose 4-epimerase 0.21 Psyr_0237 alanine racemase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_2704 UDP-galactose 4-epimerase 0.21 Psyr_0237 alanine racemase — —
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS19470 UDP-glucose 4-epimerase GalE 0.19 ABZR87_RS11665 alanine racemase — —
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS25435 UDP-glucose 4-epimerase GalE 0.19 QEN71_RS06315 alanine racemase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF652 UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2) 0.21 GFF1422 Alanine racemase (EC 5.1.1.1) low > 78
Ralstonia solanacearum UW163 0.32 UW163_RS20695 UDP-glucose 4-epimerase GalE 0.19 UW163_RS13535 alanine racemase — —
Ralstonia solanacearum IBSBF1503 0.32 RALBFv3_RS18435 UDP-glucose 4-epimerase GalE 0.19 RALBFv3_RS00205 alanine racemase — —
Ralstonia solanacearum PSI07 0.32 RPSI07_RS05120 UDP-glucose 4-epimerase GalE 0.19 RPSI07_RS17275 alanine racemase — —
Ralstonia solanacearum GMI1000 0.32 RS_RS22435 UDP-glucose 4-epimerase GalE 0.18 RS_RS06875 alanine racemase — —
Shewanella loihica PV-4 0.32 Shew_2285 UDP-glucose 4-epimerase (RefSeq) 0.20 Shew_3277 alr alanine racemase (RefSeq) — —
Paraburkholderia graminis OAS925 0.32 ABIE53_001185 UDP-glucose 4-epimerase 0.19 ABIE53_002527 alanine racemase — —
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_00074 UDP-galactose 4-epimerase 0.19 H281DRAFT_00589 alanine racemase — —
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS04450 UDP-glucose 4-epimerase 0.19 BPHYT_RS12240 alanine racemase — —
Shewanella sp. ANA-3 0.32 Shewana3_2783 UDP-galactose 4-epimerase (RefSeq) 0.19 Shewana3_0714 alr alanine racemase (RefSeq) — —
Variovorax sp. SCN45 0.32 GFF68 UDP-glucose 4-epimerase (EC 5.1.3.2) 0.17 GFF5109 Alanine racemase (EC 5.1.1.1) — —
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS35875 UDP-galactose-4-epimerase 0.20 RR42_RS12035 alanine racemase — —
Erwinia tracheiphila SCR3 0.32 LU632_RS08830 galE UDP-glucose 4-epimerase GalE 0.19 LU632_RS13065 dadX catabolic alanine racemase DadX — —
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_5092 UDP-glucose 4-epimerase (EC 5.1.3.2) 0.21 Pf1N1B4_2146 Alanine racemase (EC 5.1.1.1) — —
Shewanella oneidensis MR-1 0.32 SO1664 galE UDP-glucose 4-epimerase (NCBI ptt file) 0.20 SO3916 alr alanine racemase, biosynthetic (NCBI ptt file) — —
Lysobacter sp. OAE881 0.31 ABIE51_RS04290 UDP-glucose 4-epimerase GalE 0.20 ABIE51_RS09255 alanine racemase — —
Dinoroseobacter shibae DFL-12 0.30 Dshi_3868 UDP-glucose 4-epimerase (RefSeq) 0.64 Dshi_2378 alanine racemase (RefSeq) low > 64
Bifidobacterium breve UCC2003 0.27 BBR_RS18650 UDP-glucose 4-epimerase GalE 0.12 BBR_RS13170 alanine racemase — —
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_1301 UDP-glucose 4-epimerase (EC 5.1.3.2) 0.22 PfGW456L13_814 Alanine racemase (EC 5.1.1.1) — —
Methanococcus maripaludis S2 0.16 MMP_RS05635 NAD-dependent epimerase/dehydratase family protein 0.18 MMP_RS07770 alanine racemase low > 25
Methanococcus maripaludis JJ 0.15 MMJJ_RS08715 NAD-dependent epimerase/dehydratase family protein 0.18 MMJJ_RS06585 alanine racemase low > 28
Brevundimonas sp. GW460-12-10-14-LB2 0.14 A4249_RS12985 GDP-mannose 4,6-dehydratase 0.32 A4249_RS03755 alanine racemase — —

Not shown: 10 genomes with orthologs for PGA1_c34470 only; 16 genomes with orthologs for PGA1_c10880 only