Conservation of cofitness between Echvi_2067 and Echvi_2408 in Echinicola vietnamensis KMM 6221, DSM 17526

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Echinicola vietnamensis KMM 6221, DSM 17526 1.0 Echvi_2067 DNA repair protein RecN 1.0 Echvi_2408 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.71 8
Pontibacter actiniarum KMM 6156, DSM 19842 0.49 CA264_13235 DNA repair protein RecN 0.23 CA264_08955 DNA polymerase IV low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS06580 DNA repair protein RecN 0.60 ABZR88_RS07745 DNA polymerase IV low > 71
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS02000 DNA repair protein RecN 0.19 HMPREF1078_RS15010 DNA polymerase IV low > 61
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS14500 DNA repair protein RecN 0.21 ABI39_RS09595 DNA polymerase IV low > 72
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS18225 DNA repair protein RecN 0.21 HMPREF1058_RS13990 DNA polymerase IV low > 67
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS10900 DNA repair protein RecN 0.20 HMPREF1181_RS13945 DNA polymerase IV low > 56
Bacteroides thetaiotaomicron VPI-5482 0.37 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.18 BT4409 DNA damage-inducible protein (NCBI ptt file) low > 81
Pedobacter sp. GW460-11-11-14-LB5 0.36 CA265_RS14855 DNA repair protein RecN 0.52 CA265_RS06545 DNA polymerase IV 0.44 22
Bacteroides ovatus ATCC 8483 0.36 BACOVA_00200 DNA repair protein RecN 0.20 BACOVA_05231 putative DNA polymerase IV low > 94
Marinobacter adhaerens HP15 0.29 HP15_3084 DNA repair protein RecN 0.22 HP15_737 DNA polymerase IV low > 73
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_04395 DNA repair protein RecN 0.17 CSW01_11635 DNA polymerase IV low > 62
Pseudomonas sp. S08-1 0.27 OH686_17050 DNA repair protein RecN 0.23 OH686_18925 DNA polymerase IV low > 80
Shewanella amazonensis SB2B 0.27 Sama_1026 recombination and repair protein (RefSeq) 0.22 Sama_2527 DNA polymerase IV (RefSeq) 0.54 16
Pseudomonas simiae WCS417 0.27 PS417_24070 recombination and repair protein 0.22 PS417_22830 DNA polymerase IV 0.20 43
Shewanella loihica PV-4 0.26 Shew_1196 recombination and repair protein (RefSeq) 0.22 Shew_2871 DNA polymerase IV (RefSeq) 0.61 10
Shewanella sp. ANA-3 0.26 Shewana3_1104 recombination and repair protein (RefSeq) 0.22 Shewana3_0949 DNA polymerase IV (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_3370 DNA repair protein RecN 0.21 Pf6N2E2_2974 DNA polymerase IV (EC 2.7.7.7) 0.18 94
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS25910 DNA repair protein RecN 0.22 PFLU_RS24490 DNA polymerase IV low > 109
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_1178 DNA repair protein RecN 0.22 Pf1N1B4_3165 DNA polymerase IV (EC 2.7.7.7) low > 87
Pseudomonas fluorescens SBW25 0.26 PFLU_RS25910 DNA repair protein RecN 0.22 PFLU_RS24490 DNA polymerase IV low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_4197 DNA replication and repair protein RecN 0.21 Psyr_1397 DNA-directed DNA polymerase low > 86
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_4197 DNA replication and repair protein RecN 0.21 Psyr_1397 DNA-directed DNA polymerase low > 86
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_05660 DNA repair protein RecN 0.21 AO353_16910 DNA polymerase IV low > 101
Pseudomonas stutzeri RCH2 0.25 Psest_0962 DNA repair protein RecN 0.22 Psest_1304 Nucleotidyltransferase/DNA polymerase involved in DNA repair low > 67
Rahnella sp. WP5 0.25 EX31_RS21760 DNA repair protein RecN 0.20 EX31_RS21005 DNA polymerase IV low > 89
Pseudomonas sp. RS175 0.25 PFR28_00071 DNA repair protein RecN 0.22 PFR28_00492 DNA polymerase IV low > 88
Dickeya dadantii 3937 0.25 DDA3937_RS04325 DNA repair protein RecN 0.21 DDA3937_RS16575 DNA polymerase IV low > 74
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_07510 DNA repair protein RecN 0.21 AO356_05570 DNA polymerase IV 0.33 38
Fusobacterium nucleatum SB010 0.25 HUW76_08055 DNA repair protein RecN 0.15 HUW76_04255 DNA polymerase IV low > 35
Dickeya dianthicola ME23 0.24 DZA65_RS04235 DNA repair protein RecN 0.21 DZA65_RS17735 DNA polymerase IV low > 75
Dickeya dianthicola 67-19 0.24 HGI48_RS04320 DNA repair protein RecN 0.21 HGI48_RS16645 DNA polymerase IV low > 71
Pseudomonas putida KT2440 0.24 PP_4729 factor used in recombination and DNA repair 0.22 PP_1203 DNA polymerase IV low > 96
Pantoea sp. MT58 0.24 IAI47_04810 DNA repair protein RecN 0.20 IAI47_15175 DNA polymerase IV low > 76
Pectobacterium carotovorum WPP14 0.24 HER17_RS17420 DNA repair protein RecN 0.20 HER17_RS04670 DNA polymerase IV low > 75
Acidovorax sp. GW101-3H11 0.24 Ac3H11_3460 DNA repair protein RecN 0.18 Ac3H11_1600 DNA polymerase IV (EC 2.7.7.7) low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF4162 DNA repair protein RecN 0.19 GFF4104 DNA polymerase IV (EC 2.7.7.7) low > 78
Enterobacter sp. TBS_079 0.24 MPMX20_03486 DNA repair protein RecN 0.19 MPMX20_00921 DNA polymerase IV low > 85
Bosea sp. OAE506 0.24 ABIE41_RS12645 DNA repair protein RecN 0.21 ABIE41_RS18185 DNA polymerase IV low > 77
Klebsiella michiganensis M5al 0.23 BWI76_RS21560 DNA repair protein RecN 0.20 BWI76_RS05530 DNA polymerase IV low > 92
Castellaniella sp019104865 MT123 0.23 ABCV34_RS07470 DNA repair protein RecN 0.20 ABCV34_RS12020 DNA polymerase IV low > 48
Serratia liquefaciens MT49 0.23 IAI46_19635 DNA repair protein RecN 0.20 IAI46_04405 DNA polymerase IV low > 86
Herbaspirillum seropedicae SmR1 0.23 HSERO_RS03060 DNA repair protein 0.20 HSERO_RS21635 DNA-directed DNA polymerase low > 78
Escherichia coli ECOR38 0.23 HEPCGN_20265 recN DNA repair protein RecN 0.19 HEPCGN_07825 dinB DNA polymerase IV low > 85
Ralstonia solanacearum GMI1000 0.23 RS_RS13275 DNA repair protein RecN 0.22 RS_RS07995 DNA polymerase IV low > 80
Ralstonia solanacearum IBSBF1503 0.23 RALBFv3_RS05415 DNA repair protein RecN 0.22 RALBFv3_RS01730 DNA polymerase IV low > 76
Ralstonia solanacearum UW163 0.23 UW163_RS08210 DNA repair protein RecN 0.22 UW163_RS15040 DNA polymerase IV — —
Agrobacterium fabrum C58 0.23 Atu2083 DNA repair protein RecN 0.20 Atu1294 DNA polymerase IV low > 89
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2719 DNA repair protein RecN 0.19 EX28DRAFT_2657 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.45 58
Alteromonas macleodii MIT1002 0.23 MIT1002_01443 Recombination protein N 0.20 MIT1002_03478 DNA polymerase IV low > 70
Kangiella aquimarina DSM 16071 0.23 B158DRAFT_0601 DNA replication and repair protein RecN 0.21 B158DRAFT_1563 Nucleotidyltransferase/DNA polymerase involved in DNA repair low > 40
Ralstonia solanacearum PSI07 0.23 RPSI07_RS11890 DNA repair protein RecN 0.22 RPSI07_RS15755 DNA polymerase IV low > 81
Cupriavidus basilensis FW507-4G11 0.22 RR42_RS05910 DNA repair protein 0.18 RR42_RS08990 DNA polymerase 0.29 61
Ralstonia sp. UNC404CL21Col 0.22 ABZR87_RS01065 DNA repair protein RecN 0.22 ABZR87_RS13550 DNA polymerase IV low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.22 GFF829 DNA repair protein RecN 0.19 GFF728 DNA polymerase IV (EC 2.7.7.7) low > 90
Rhodanobacter sp. FW510-T8 0.22 OKGIIK_07340 recN DNA repair protein RecN 0.17 OKGIIK_12560 dinB DNA polymerase IV low > 52
Azospirillum sp. SherDot2 0.21 MPMX19_01601 DNA repair protein RecN 0.21 MPMX19_05504 DNA polymerase IV low > 112
Synechococcus elongatus PCC 7942 0.21 Synpcc7942_1779 recN DNA repair protein RecN 0.12 Synpcc7942_1550 umuC DNA-directed DNA polymerase low > 38
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_1026 DNA repair protein RecN 0.12 Ga0059261_3438 Nucleotidyltransferase/DNA polymerase involved in DNA repair low > 68
Rhodanobacter denitrificans MT42 0.21 LRK55_RS17815 DNA repair protein RecN 0.20 LRK55_RS11065 DNA polymerase IV low > 63
Rhodanobacter denitrificans FW104-10B01 0.21 LRK54_RS17960 DNA repair protein RecN 0.20 LRK54_RS11335 DNA polymerase IV low > 59
Rhodopseudomonas palustris CGA009 0.21 TX73_018240 DNA repair protein RecN 0.23 TX73_016210 DNA polymerase IV low > 86
Variovorax sp. SCN45 0.20 GFF2357 DNA repair protein RecN 0.19 GFF5999 DNA polymerase IV (EC 2.7.7.7) low > 127
Magnetospirillum magneticum AMB-1 0.20 AMB_RS19520 DNA repair protein RecN 0.21 AMB_RS03210 DNA polymerase IV — —
Rhodospirillum rubrum S1H 0.20 Rru_A0940 DNA repair protein RecN (NCBI) 0.20 Rru_A3530 DNA-directed DNA polymerase (NCBI) — —
Dechlorosoma suillum PS 0.20 Dsui_3072 DNA repair protein RecN 0.19 Dsui_2075 nucleotidyltransferase/DNA polymerase involved in DNA repair — —
Paraburkholderia sabiae LMG 24235 0.20 QEN71_RS26535 DNA repair protein RecN 0.18 QEN71_RS08870 DNA polymerase IV low > 153
Phaeobacter inhibens DSM 17395 0.19 PGA1_c09720 DNA repair protein RecN 0.19 PGA1_c32470 DNA polymerase IV low > 62
Bifidobacterium breve UCC2003 0.19 BBR_RS14030 DNA repair protein RecN 0.21 BBR_RS19045 DNA polymerase IV low > 34
Acinetobacter radioresistens SK82 0.18 MPMX26_00239 DNA repair protein RecN 0.18 MPMX26_00130 DNA polymerase IV low > 36
Burkholderia phytofirmans PsJN 0.18 BPHYT_RS03560 DNA repair protein 0.18 BPHYT_RS01275 DNA-directed DNA polymerase low > 109
Paraburkholderia graminis OAS925 0.18 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.17 ABIE53_005211 DNA polymerase-4 low > 113
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_02062 DNA repair protein recN 0.23 CCNA_02550 DNA polymerase IV-kappa DinB low > 67
Caulobacter crescentus NA1000 0.17 CCNA_02062 DNA repair protein recN 0.23 CCNA_02550 DNA polymerase IV-kappa DinB low > 66
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU2463 recN DNA repair protein RecN (TIGR) 0.27 DVU0071 dinP DNA polymerase IV (TIGR) low > 55
Dinoroseobacter shibae DFL-12 0.17 Dshi_2413 DNA repair protein RecN (RefSeq) 0.20 Dshi_0385 DNA-directed DNA polymerase (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.16 A4249_RS02620 DNA repair protein RecN 0.22 A4249_RS08360 DNA polymerase IV low > 48

Not shown: 23 genomes with orthologs for Echvi_2067 only; 2 genomes with orthologs for Echvi_2408 only