Conservation of cofitness between EX28DRAFT_3313 and EX28DRAFT_0604 in Enterobacter asburiae PDN3

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Enterobacter asburiae PDN3 1.0 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family 1.0 EX28DRAFT_0604 flagellar biosynthetic protein FliR 0.64 12
Enterobacter sp. TBS_079 0.98 MPMX20_04169 tRNA-dihydrouridine synthase B 0.99 MPMX20_02947 Flagellar biosynthetic protein FliR 0.50 12
Escherichia coli ECOR27 0.94 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB 0.75 NOLOHH_16285 fliR flagellar type III secretion system protein FliR low > 76
Escherichia coli ECRC101 0.94 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB 0.75 MCAODC_19740 fliR flagellar type III secretion system protein FliR low > 88
Escherichia coli ECRC102 0.94 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB 0.75 NIAGMN_02400 fliR flagellar type III secretion system protein FliR low > 80
Escherichia coli ECOR38 0.94 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB 0.68 HEPCGN_04015 fliR flagellar type III secretion system protein FliR low > 88
Escherichia coli BW25113 0.94 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) 0.75 b1950 fliR flagellar biosynthesis protein R (NCBI) low > 76
Escherichia fergusonii Becca 0.94 EFB2_00564 tRNA-dihydrouridine synthase B 0.76 EFB2_01996 Flagellar biosynthetic protein FliR low > 86
Escherichia coli ECRC100 0.94 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB 0.75 OKFHMN_25655 fliR flagellar type III secretion system protein FliR low > 79
Escherichia coli ECRC62 0.94 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB 0.75 BNILDI_15075 fliR flagellar type III secretion system protein FliR low > 75
Erwinia amylovora T8 0.88 OLJFJH_06855 tRNA dihydrouridine synthase DusB 0.63 OLJFJH_15415 flagellar type III secretion system protein FliR low > 58
Rahnella sp. WP5 0.88 EX31_RS12180 tRNA dihydrouridine synthase DusB 0.67 EX31_RS09600 flagellar type III secretion system protein FliR low > 89
Serratia liquefaciens MT49 0.88 IAI46_22775 tRNA dihydrouridine synthase DusB 0.62 IAI46_15900 flagellar type III secretion system protein FliR low > 86
Dickeya dianthicola ME23 0.87 DZA65_RS01355 tRNA dihydrouridine synthase DusB 0.56 DZA65_RS13955 flagellar type III secretion system protein FliR 0.75 22
Dickeya dianthicola 67-19 0.87 HGI48_RS01295 tRNA dihydrouridine synthase DusB 0.56 HGI48_RS13470 flagellar type III secretion system protein FliR 0.54 9
Dickeya dadantii 3937 0.87 DDA3937_RS01375 tRNA dihydrouridine synthase DusB 0.57 DDA3937_RS13425 flagellar type III secretion system protein FliR low > 74
Pectobacterium carotovorum WPP14 0.87 HER17_RS20235 tRNA dihydrouridine synthase DusB 0.65 HER17_RS08220 flagellar type III secretion system protein FliR low > 75
Erwinia tracheiphila HP pepo 2.2 0.87 IJEDHG_13500 dusB tRNA dihydrouridine synthase DusB 0.68 IJEDHG_21175 fliR flagellar type III secretion system protein FliR low > 61
Pantoea agglomerans CFBP13505 P0401 0.85 PagCFBP13505_RS10980 tRNA dihydrouridine synthase DusB 0.64 PagCFBP13505_RS01880 flagellar type III secretion system protein FliR low > 74
Pantoea sp. MT58 0.85 IAI47_02385 tRNA dihydrouridine synthase DusB 0.64 IAI47_07970 flagellar type III secretion system protein FliR low > 76
Escherichia coli ECRC99 0.85 KEDOAH_10465 dusB tRNA dihydrouridine synthase DusB 0.75 KEDOAH_02440 fliR flagellar type III secretion system protein FliR — —
Escherichia coli ECRC98 0.85 JDDGAC_21310 dusB tRNA dihydrouridine synthase DusB 0.75 JDDGAC_00240 fliR flagellar type III secretion system protein FliR low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_00445 putative tRNA-dihydrouridine synthase 0.75 OHPLBJKB_01779 hypothetical protein low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.82 GFF2124 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.80 GFF4006 Flagellar biosynthesis protein FliR low > 78
Alteromonas macleodii MIT1002 0.69 MIT1002_03957 putative tRNA-dihydrouridine synthase 0.27 MIT1002_01097 Flagellar biosynthetic protein FliR low > 70
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_01495 tRNA dihydrouridine synthase DusB 0.29 CSW01_10585 flagellar type III secretion system protein FliR low > 62
Shewanella amazonensis SB2B 0.67 Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) 0.29 Sama_2285 fliR flagellar biosynthesis protein FliR (RefSeq) low > 62
Shewanella sp. ANA-3 0.64 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) 0.33 Shewana3_1354 fliR flagellar biosynthesis protein FliR (RefSeq) low > 73
Shewanella loihica PV-4 0.64 Shew_0330 nifR3 family TIM-barrel protein (RefSeq) 0.30 Shew_1378 fliR flagellar biosynthesis protein FliR (RefSeq) — —
Shewanella oneidensis MR-1 0.63 SO0394 conserved hypothetical protein (NCBI ptt file) 0.32 SO3216 fliR flagellar biosynthetic protein FliR (NCBI ptt file) low > 76
Pseudomonas sp. S08-1 0.58 OH686_07610 tRNA-dihydrouridine synthase DusB 0.30 OH686_02760 flagellar biosynthetic protein FliR low > 80
Marinobacter adhaerens HP15 0.57 HP15_3225 tRNA-dihydrouridine synthase B 0.34 HP15_2310 flagellar biosynthesis protein FliR low > 73
Pseudomonas putida KT2440 0.57 PP_4820 tRNA-dihydrouridine synthase B 0.29 PP_4353 Flagellar biosynthetic protein fliR low > 96
Pseudomonas sp. BP01 0.57 JOY50_RS17635 dusB tRNA dihydrouridine synthase DusB 0.31 JOY50_RS00610 fliR flagellar biosynthetic protein FliR low > 84
Pseudomonas stutzeri RCH2 0.56 Psest_1016 putative TIM-barrel protein, nifR3 family 0.31 Psest_1734 flagellar biosynthetic protein FliR low > 67
Pseudomonas segetis P6 0.56 MPMX49_04106 tRNA-dihydrouridine synthase B 0.31 MPMX49_03132 Flagellar biosynthetic protein FliR low > 75
Lysobacter sp. OAE881 0.56 ABIE51_RS16450 tRNA dihydrouridine synthase DusB 0.21 ABIE51_RS16840 flagellar biosynthetic protein FliR low > 62
Ralstonia solanacearum PSI07 0.55 RPSI07_RS21520 tRNA dihydrouridine synthase DusB 0.34 RPSI07_RS01450 flagellar biosynthetic protein FliR low > 81
Pseudomonas aeruginosa PA14 0.55 IKLFDK_29300 tRNA dihydrouridine synthase DusB 0.30 IKLFDK_06885 flagellar biosynthetic protein FliR low > 100
Methylophilus sp. DMC18 0.55 GFF1646 tRNA-dihydrouridine synthase B 0.33 GFF552 Flagellar biosynthetic protein FliR low > 43
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS07650 tRNA dihydrouridine synthase DusB 0.35 ABZR87_RS22220 flagellar biosynthetic protein FliR low > 80
Ralstonia solanacearum UW163 0.55 UW163_RS01890 tRNA dihydrouridine synthase DusB 0.35 UW163_RS17510 flagellar biosynthetic protein FliR — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB 0.35 RALBFv3_RS21675 flagellar biosynthetic protein FliR low > 76
Ralstonia solanacearum GMI1000 0.54 RS_RS02515 tRNA dihydrouridine synthase DusB 0.34 RS_RS18950 flagellar biosynthetic protein FliR low > 80
Pseudomonas sp. SVBP6 0.54 COO64_RS18315 dusB tRNA dihydrouridine synthase DusB 0.31 COO64_RS21205 fliR flagellar biosynthetic protein FliR low > 93
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_08215 tRNA-dihydrouridine synthase B 0.31 AO356_03760 flagellar biosynthetic protein FliR low > 104
Pseudomonas sp. RS175 0.54 PFR28_05216 tRNA-dihydrouridine synthase B 0.31 PFR28_00847 Flagellar biosynthetic protein FliR low > 88
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.29 Pf1N1B4_3620 Flagellar biosynthesis protein FliR low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.31 Psyr_3442 Flagellar biosynthesis protein FliR low > 86
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.30 Pf6N2E2_2578 Flagellar biosynthesis protein FliR low > 103
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.29 PfGW456L13_4337 Flagellar biosynthesis protein FliR low > 87
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.31 Psyr_3442 Flagellar biosynthesis protein FliR low > 86
Pseudomonas sp. DMC3 0.53 GFF3310 tRNA-dihydrouridine synthase B 0.28 GFF2465 Flagellar biosynthetic protein FliR 0.53 68
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_13660 tRNA-dihydrouridine synthase B 0.31 AO353_18755 flagellar biosynthetic protein FliR low > 101
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS02730 tRNA-dihydrouridine synthase B 0.38 RR42_RS23350 flagellar biosynthesis protein FliR low > 128
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_00822 tRNA-dihydrouridine synthase B 0.30 GEMAOFIL_04144 Flagellar biosynthetic protein FliR low > 93
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase 0.41 H281DRAFT_05774 flagellar biosynthetic protein FliR low > 103
Pseudomonas simiae WCS417 0.53 PS417_02950 tRNA-dihydrouridine synthase B 0.30 PS417_19730 flagellar biosynthesis protein FliR 0.29 41
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.30 PFLU_RS21700 flagellar type III secretion system protein FliR low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.30 PFLU_RS21700 flagellar type III secretion system protein FliR low > 109
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS26770 tRNA dihydrouridine synthase DusB 0.43 QEN71_RS28855 flagellar biosynthetic protein FliR low > 153
Dechlorosoma suillum PS 0.52 Dsui_1593 putative TIM-barrel protein, nifR3 family 0.36 Dsui_1744 flagellar biosynthetic protein FliR low > 51
Variovorax sp. SCN45 0.52 GFF2144 tRNA-dihydrouridine synthase DusB 0.46 GFF5738 Flagellar biosynthesis protein FliR low > 127
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS02050 tRNA-dihydrouridine synthase B 0.31 HSERO_RS10250 flagellar biosynthesis protein FliR low > 78
Paraburkholderia graminis OAS925 0.51 ABIE53_003489 tRNA-dihydrouridine synthase B 0.42 ABIE53_000086 flagellar biosynthetic protein FliR low > 113
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS16585 tRNA-dihydrouridine synthase B 0.42 BPHYT_RS18835 flagellar biosynthesis protein FliR low > 109
Rhodanobacter sp000427505 FW510-R12 0.50 LRK53_RS16445 tRNA dihydrouridine synthase DusB 0.27 LRK53_RS15020 flagellar biosynthetic protein FliR low > 59
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_11770 dusB tRNA dihydrouridine synthase DusB 0.24 OKGIIK_02805 fliR flagellar biosynthetic protein FliR low > 53
Castellaniella sp019104865 MT123 0.50 ABCV34_RS07960 tRNA dihydrouridine synthase DusB 0.44 ABCV34_RS05705 flagellar biosynthetic protein FliR — —
Acidovorax sp. GW101-3H11 0.50 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.37 Ac3H11_1416 Flagellar biosynthesis protein FliR low > 79
Rhodanobacter denitrificans MT42 0.49 LRK55_RS11875 tRNA dihydrouridine synthase DusB 0.22 LRK55_RS13295 flagellar biosynthetic protein FliR low > 63
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS12140 tRNA dihydrouridine synthase DusB 0.22 LRK54_RS13555 flagellar biosynthetic protein FliR low > 59
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS11525 tRNA dihydrouridine synthase DusB 0.27 ABZR86_RS20240 flagellar biosynthetic protein FliR low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.35 GFF1463 Flagellar biosynthesis protein FliR — —
Sphingobium sp. HT1-2 0.40 GFF1150 tRNA-dihydrouridine synthase DusB 0.21 GFF3740 Flagellar biosynthesis protein FliR low > 95
Magnetospirillum magneticum AMB-1 0.40 AMB_RS11940 tRNA dihydrouridine synthase DusB 0.13 AMB_RS03185 flagellar type III secretion system protein FliR low > 64
Azospirillum brasilense Sp245 0.38 AZOBR_RS14420 tRNA-dihydrouridine synthase 0.15 AZOBR_RS11115 flagellar biosynthesis protein FliR low > 97
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_0140 tRNA-U20-dihydrouridine synthase 0.21 Ga0059261_2060 flagellar biosynthetic protein FliR low > 68
Agrobacterium fabrum C58 0.37 Atu1444 nitrogen regulation protein 0.14 Atu0582 flagellar biosynthetic protein FLIR low > 89
Rhodopseudomonas palustris CGA009 0.34 TX73_013410 tRNA dihydrouridine synthase DusB 0.17 TX73_020140 flagellar biosynthetic protein FliR low > 86
Phaeobacter inhibens DSM 17395 0.34 PGA1_c14770 tRNA-dihydrouridine synthase DusB 0.13 PGA1_c35720 flagellar biosynthetic protein FliR low > 62
Xanthobacter sp. DMC5 0.34 GFF850 tRNA-dihydrouridine synthase B 0.11 GFF4512 hypothetical protein — —
Rhodospirillum rubrum S1H 0.32 Rru_A1676 Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) 0.13 Rru_A2822 Flagellar biosynthesis protein FliR (NCBI) low > 58
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS04810 tRNA dihydrouridine synthase DusB 0.15 A4249_RS15230 flagellar biosynthetic protein FliR low > 48
Dinoroseobacter shibae DFL-12 0.30 Dshi_1576 putative TIM-barrel protein, nifR3 family (RefSeq) 0.13 Dshi_3257 type III secretion system inner membrane R protein (RefSeq) low > 64
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_01813 tRNA-dihydrouridine synthase 0.17 CCNA_01130 flagellar biosynthesis protein FliR low > 67
Caulobacter crescentus NA1000 0.27 CCNA_01813 tRNA-dihydrouridine synthase 0.17 CCNA_01130 flagellar biosynthesis protein FliR low > 66

Not shown: 26 genomes with orthologs for EX28DRAFT_3313 only; 4 genomes with orthologs for EX28DRAFT_0604 only