Conservation of cofitness between ECD_03253 and ECD_04046 in Escherichia coli BL21

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03253 heat shock protein Hsp33 1.0 ECD_04046 exoribonuclease R, RNase R 0.56 5
Escherichia coli BW25113 1.00 b3401 yrfI orf, hypothetical protein (VIMSS) 1.00 b4179 vacB putative enzyme (VIMSS) 0.42 2
Escherichia coli ECRC62 1.00 BNILDI_02675 hslO Hsp33 family molecular chaperone HslO 1.00 BNILDI_07005 rnr ribonuclease R low > 75
Escherichia coli ECOR27 1.00 NOLOHH_08845 hslO Hsp33 family molecular chaperone HslO 1.00 NOLOHH_04485 rnr ribonuclease R low > 75
Escherichia coli ECRC98 1.00 JDDGAC_20685 hslO Hsp33 family molecular chaperone HslO 1.00 JDDGAC_15860 rnr ribonuclease R 0.75 68
Escherichia coli ECRC99 1.00 KEDOAH_11085 hslO Hsp33 family molecular chaperone HslO 1.00 KEDOAH_15935 rnr ribonuclease R — —
Escherichia fergusonii Becca 1.00 EFB2_00427 33 kDa chaperonin 0.99 EFB2_04356 Ribonuclease R low > 86
Escherichia coli ECRC102 1.00 NIAGMN_14825 hslO Hsp33 family molecular chaperone HslO 1.00 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli ECRC101 1.00 MCAODC_07585 hslO Hsp33 family molecular chaperone HslO 1.00 MCAODC_02735 rnr ribonuclease R low > 87
Escherichia coli ECRC100 1.00 OKFHMN_17055 hslO Hsp33 family molecular chaperone HslO 0.99 OKFHMN_12220 rnr ribonuclease R 0.84 7
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00302 33 kDa chaperonin 1.00 OHPLBJKB_03863 Ribonuclease R low > 73
Escherichia coli Nissle 1917 1.00 ECOLIN_RS19420 Hsp33 family molecular chaperone HslO 0.99 ECOLIN_RS24265 ribonuclease R low > 55
Escherichia coli ECOR38 1.00 HEPCGN_15875 hslO Hsp33 family molecular chaperone HslO 1.00 HEPCGN_10450 rnr ribonuclease R low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF618 33 kDa chaperonin (Heat shock protein 33) (HSP33) 0.93 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.84 41
Enterobacter sp. TBS_079 0.89 MPMX20_04289 33 kDa chaperonin 0.90 MPMX20_00460 Ribonuclease R low > 85
Enterobacter asburiae PDN3 0.89 EX28DRAFT_4141 Disulfide bond chaperones of the HSP33 family 0.91 EX28DRAFT_3376 ribonuclease R — —
Klebsiella michiganensis M5al 0.88 BWI76_RS26150 molecular chaperone Hsp33 0.91 BWI76_RS02575 exoribonuclease R low > 92
Erwinia tracheiphila SCR3 0.75 LU632_RS22925 hslO Hsp33 family molecular chaperone HslO 0.79 LU632_RS21750 rnr ribonuclease R low > 74
Serratia liquefaciens MT49 0.75 IAI46_23765 Hsp33 family molecular chaperone HslO 0.76 IAI46_01660 ribonuclease R low > 86
Pantoea sp. MT58 0.74 IAI47_01835 Hsp33 family molecular chaperone HslO 0.78 IAI47_02625 ribonuclease R low > 76
Pectobacterium carotovorum WPP14 0.73 HER17_RS01715 Hsp33 family molecular chaperone HslO 0.76 HER17_RS03835 ribonuclease R low > 75
Dickeya dadantii 3937 0.73 DDA3937_RS19605 Hsp33 family molecular chaperone HslO 0.76 DDA3937_RS17260 ribonuclease R low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS19735 Hsp33 family molecular chaperone HslO 0.75 HGI48_RS17315 ribonuclease R low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS20825 Hsp33 family molecular chaperone HslO 0.75 DZA65_RS18405 ribonuclease R low > 75
Rahnella sp. WP5 0.71 EX31_RS04775 Hsp33 family molecular chaperone HslO 0.77 EX31_RS08785 ribonuclease R low > 89
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_13805 Hsp33 family molecular chaperone HslO 0.63 CSW01_13155 ribonuclease R low > 62
Shewanella oneidensis MR-1 0.57 SO0163 hslO chaperonin HslO (NCBI ptt file) 0.56 SO3935 vacB ribonuclease R (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_0148 hslO Hsp33-like chaperonin (RefSeq) 0.56 Shewana3_0697 RNAse R (RefSeq) low > 73
Shewanella loihica PV-4 0.56 Shew_3622 hslO Hsp33-like chaperonin (RefSeq) 0.57 Shew_3289 ribonuclease R (RefSeq) low > 60
Shewanella amazonensis SB2B 0.51 Sama_0166 hslO Hsp33-like chaperonin (RefSeq) 0.53 Sama_3067 exoribonuclease II (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.44 MIT1002_03973 Heat shock protein 33 0.54 MIT1002_03606 Ribonuclease R low > 70
Pseudomonas sp. S08-1 0.39 OH686_11065 33 kDa chaperonin HslO 0.49 OH686_15910 ribonuclease R low > 80
Pseudomonas simiae WCS417 0.38 PS417_01205 molecular chaperone Hsp33 0.49 PS417_02555 exoribonuclease R — —
Marinobacter adhaerens HP15 0.38 HP15_3497 Hsp33-like chaperonin 0.45 HP15_622 exoribonuclease R low > 73
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS01315 Hsp33 family molecular chaperone HslO 0.49 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens SBW25 0.37 PFLU_RS01315 Hsp33 family molecular chaperone HslO 0.49 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_11770 molecular chaperone Hsp33 0.49 AO353_13200 exoribonuclease R 0.28 45
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_3900 33 kDa chaperonin (Heat shock protein 33) (HSP33) 0.50 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R — —
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_1777 33 kDa chaperonin (Heat shock protein 33) (HSP33) 0.49 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R — —
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_10145 molecular chaperone Hsp33 0.50 AO356_08610 exoribonuclease R 0.38 4
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_422 33 kDa chaperonin (Heat shock protein 33) (HSP33) 0.49 PfGW456L13_144 3'-to-5' exoribonuclease RNase R — —
Pseudomonas sp. RS175 0.36 PFR28_04873 33 kDa chaperonin 0.49 PFR28_05130 Ribonuclease R low > 88
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0686 Disulfide bond chaperones of the HSP33 family 0.51 B158DRAFT_1989 ribonuclease R low > 40
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_0169 Hsp33 protein 0.49 Psyr_0579 RNAse R low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_0169 Hsp33 protein 0.49 Psyr_0579 RNAse R 0.37 37
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS08605 Hsp33 chaperonin 0.40 HSERO_RS09290 ribonuclease R low > 78
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS05895 Hsp33 family molecular chaperone HslO 0.41 QEN71_RS22925 ribonuclease R low > 153
Pseudomonas stutzeri RCH2 0.34 Psest_3989 Disulfide bond chaperones of the HSP33 family 0.49 Psest_0691 ribonuclease R low > 67
Pseudomonas putida KT2440 0.34 PP_0252 33 kDa chaperonin 0.48 PP_4880 exoribonuclease R — —
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS12660 Hsp33 chaperonin 0.41 BPHYT_RS08455 ribonuclease R low > 109
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_00500 molecular chaperone Hsp33 0.41 H281DRAFT_00712 RNAse R low > 103
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS05450 Hsp33 family molecular chaperone HslO 0.42 LRK54_RS00495 ribonuclease R low > 59
Rhodanobacter denitrificans MT42 0.32 LRK55_RS05225 Hsp33 family molecular chaperone HslO 0.42 LRK55_RS00235 ribonuclease R low > 63
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS18925 Hsp33 family molecular chaperone HslO 0.41 ABZR86_RS08270 ribonuclease R low > 74
Paraburkholderia graminis OAS925 0.32 ABIE53_002758 molecular chaperone Hsp33 0.41 ABIE53_001940 ribonuclease R low > 113
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_01355 hslO heat-shock protein Hsp33 0.42 OKGIIK_06755 rnr ribonuclease R low > 52
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS10485 Hsp33 family molecular chaperone HslO 0.42 ABZR87_RS10985 ribonuclease R low > 80
Acinetobacter radioresistens SK82 0.30 MPMX26_00280 33 kDa chaperonin 0.36 MPMX26_02684 Ribonuclease R low > 36
Dechlorosoma suillum PS 0.30 Dsui_2544 disulfide bond chaperone 0.44 Dsui_3128 ribonuclease R low > 51
Caulobacter crescentus NA1000 0.30 CCNA_02324 heat shock protein 33 hsp33 0.21 CCNA_02537 ribonuclease R low > 66
Caulobacter crescentus NA1000 Δfur 0.30 CCNA_02324 heat shock protein 33 hsp33 0.21 CCNA_02537 ribonuclease R low > 67
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS14825 molecular chaperone Hsp33 0.42 RALBFv3_RS15345 ribonuclease R low > 76
Ralstonia solanacearum UW163 0.29 UW163_RS12295 molecular chaperone Hsp33 0.42 UW163_RS12810 ribonuclease R — —
Lysobacter sp. OAE881 0.29 ABIE51_RS16255 Hsp33 family molecular chaperone HslO 0.43 ABIE51_RS07475 ribonuclease R low > 62
Ralstonia solanacearum PSI07 0.29 RPSI07_RS18535 Hsp33 chaperonin 0.43 RPSI07_RS18030 ribonuclease R low > 81
Azospirillum brasilense Sp245 0.28 AZOBR_RS19035 molecular chaperone Hsp33 0.25 AZOBR_RS16165 ribonuclease R low > 97
Sinorhizobium meliloti 1021 0.28 SMc02136 Hsp33-like chaperonin 0.23 SMc01365 exoribonuclease II protein low > 103
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.1584.1 33 kDa chaperonin (Heat shock protein 33) (HSP33) 0.41 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R low > 74
Castellaniella sp019104865 MT123 0.28 ABCV34_RS00820 Hsp33 family molecular chaperone HslO 0.38 ABCV34_RS06625 ribonuclease R low > 48
Azospirillum sp. SherDot2 0.28 MPMX19_02179 33 kDa chaperonin 0.23 MPMX19_01812 Ribonuclease R — —
Ralstonia solanacearum GMI1000 0.28 RS_RS05635 molecular chaperone Hsp33 0.42 RS_RS06155 ribonuclease R low > 80
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS06190 molecular chaperone Hsp33 0.43 RR42_RS13065 ribonuclease R low > 128
Agrobacterium fabrum C58 0.27 Atu0430 chaperonin (heat shock protein hsp33) 0.22 Atu1303 exoribonuclease low > 89
Magnetospirillum magneticum AMB-1 0.26 AMB_RS01615 molecular chaperone 0.24 AMB_RS04465 ribonuclease R low > 64
Rhizobium sp. OAE497 0.26 ABIE40_RS02330 Hsp33 family molecular chaperone 0.24 ABIE40_RS07350 ribonuclease R low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.26 A4249_RS08965 Hsp33 family molecular chaperone 0.23 A4249_RS08325 ribonuclease R — —
Rhodospirillum rubrum S1H 0.26 Rru_A3275 Hsp33 protein (NCBI) 0.23 Rru_A3203 ribonuclease R (NCBI) low > 58
Dinoroseobacter shibae DFL-12 0.23 Dshi_3487 Hsp33 protein (RefSeq) 0.20 Dshi_0015 ribonuclease R (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.22 PGA1_c34860 33 kDa chaperonin (heat shock protein 33) 0.23 PGA1_c36430 putative ribonuclease R low > 62
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_3207 Disulfide bond chaperones of the HSP33 family 0.21 Ga0059261_3266 ribonuclease R low > 68
Synechococcus elongatus PCC 7942 0.11 Synpcc7942_0559 hslO Hsp33-like chaperonin 0.13 Synpcc7942_1911 zam Cold shock protein low > 38

Not shown: 7 genomes with orthologs for ECD_03253 only; 4 genomes with orthologs for ECD_04046 only