Conservation of cofitness between ECD_03509 and ECD_03687 in Escherichia coli BL21

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03509 ATP-dependent DNA helicase 1.0 ECD_03687 site-specific tyrosine recombinase 0.73 16
Escherichia coli BW25113 1.00 b3652 recG ATP-dependent DNA helicase (NCBI) 1.00 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) low > 76
Escherichia coli ECRC62 1.00 BNILDI_04090 recG ATP-dependent DNA helicase RecG 0.99 BNILDI_04985 xerC tyrosine recombinase XerC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 1.00 OHPLBJKB_04239 Tyrosine recombinase XerC low > 73
Escherichia coli Nissle 1917 0.99 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 1.00 ECOLIN_RS21875 tyrosine recombinase XerC 0.74 11
Escherichia coli ECOR27 0.99 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 1.00 NOLOHH_06550 xerC tyrosine recombinase XerC — —
Escherichia fergusonii Becca 0.99 EFB2_00136 ATP-dependent DNA helicase RecG 0.99 EFB2_04826 Tyrosine recombinase XerC low > 86
Escherichia coli ECRC101 0.99 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.99 OKFHMN_14420 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC102 0.99 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.99 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.99 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.99 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC98 0.99 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.99 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC99 0.99 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.99 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR38 0.99 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 1.00 HEPCGN_13125 xerC tyrosine recombinase XerC low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.91 GFF239 Tyrosine recombinase XerC — —
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.90 EX28DRAFT_4480 tyrosine recombinase XerC — —
Enterobacter sp. TBS_079 0.92 MPMX20_00084 ATP-dependent DNA helicase RecG 0.87 MPMX20_04465 Tyrosine recombinase XerC 0.38 31
Klebsiella michiganensis M5al 0.91 BWI76_RS27440 DNA helicase RecG 0.89 BWI76_RS01210 tyrosine recombinase XerC low > 92
Pantoea sp. MT58 0.84 IAI47_00500 ATP-dependent DNA helicase RecG 0.75 IAI47_18400 tyrosine recombinase XerC 0.46 64
Serratia liquefaciens MT49 0.84 IAI46_24905 ATP-dependent DNA helicase RecG 0.77 IAI46_00725 tyrosine recombinase XerC 0.46 58
Pectobacterium carotovorum WPP14 0.82 HER17_RS21395 ATP-dependent DNA helicase RecG 0.75 HER17_RS01350 tyrosine recombinase XerC low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.77 LU632_RS24135 xerC tyrosine recombinase XerC — —
Dickeya dadantii 3937 0.80 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.76 DDA3937_RS19890 tyrosine recombinase XerC — —
Rahnella sp. WP5 0.80 EX31_RS15820 ATP-dependent DNA helicase RecG 0.76 EX31_RS15165 tyrosine recombinase XerC low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.75 HGI48_RS20045 tyrosine recombinase XerC low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.75 DZA65_RS21090 tyrosine recombinase XerC low > 75
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_13680 DNA helicase RecG 0.57 CSW01_00650 tyrosine recombinase XerC 0.73 11
Shewanella amazonensis SB2B 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.51 Sama_3247 integrase/recombinase XerC (RefSeq) 0.49 9
Shewanella sp. ANA-3 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.48 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.47 24
Shewanella loihica PV-4 0.64 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.50 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Shewanella oneidensis MR-1 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.48 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.70 2
Alteromonas macleodii MIT1002 0.62 MIT1002_00111 ATP-dependent DNA helicase RecG 0.45 MIT1002_00157 Tyrosine recombinase XerC low > 70
Pseudomonas stutzeri RCH2 0.55 Psest_4192 ATP-dependent DNA helicase RecG 0.43 Psest_3767 tyrosine recombinase XerC — —
Pseudomonas putida KT2440 0.55 PP_5310 junction-specific ATP-dependent DNA helicase 0.44 PP_5230 Tyrosine recombinase XerC 0.46 18
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.44 PfGW456L13_842 Tyrosine recombinase XerC low > 87
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.44 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas simiae WCS417 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.41 PS417_27595 recombinase XerC low > 88
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.44 AO353_09050 recombinase XerC 0.51 11
Pseudomonas fluorescens SBW25 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.41 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.41 PFLU_RS29280 tyrosine recombinase XerC 0.40 18
Marinobacter adhaerens HP15 0.54 HP15_309 DNA helicase, ATP-dependent, RecG 0.47 HP15_250 site-specific tyrosine recombinase XerC low > 73
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.45 Pf6N2E2_4416 Tyrosine recombinase XerC 0.65 1
Pseudomonas sp. S08-1 0.54 OH686_13505 ATP-dependent DNA helicase RecG 0.45 OH686_13785 tyrosine recombinase XerC low > 80
Pseudomonas sp. RS175 0.54 PFR28_04435 ATP-dependent DNA helicase RecG 0.44 PFR28_04378 Tyrosine recombinase XerC low > 88
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_12380 ATP-dependent DNA helicase RecG 0.45 AO356_12725 recombinase XerC 0.68 1
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.46 Psyr_0185 tyrosine recombinase XerC subunit 0.45 11
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.46 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.43 ABIE51_RS03035 tyrosine recombinase XerC 0.82 8
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.43 ABZR86_RS15025 tyrosine recombinase XerC 0.75 20
Acinetobacter radioresistens SK82 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG 0.34 MPMX26_02230 Tyrosine recombinase XerC — —
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.44 LRK55_RS08300 tyrosine recombinase XerC low > 63
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.44 OKGIIK_15325 xerC tyrosine recombinase XerC — —
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.43 LRK54_RS08535 tyrosine recombinase XerC low > 59
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.50 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.47 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.78 5
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.40 BPHYT_RS01655 tyrosine recombinase XerC — —
Paraburkholderia graminis OAS925 0.45 ABIE53_000833 ATP-dependent DNA helicase RecG 0.40 ABIE53_000426 integrase/recombinase XerC — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.39 H281DRAFT_02202 integrase/recombinase XerC — —
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.39 QEN71_RS00355 tyrosine recombinase XerC — —
Ralstonia solanacearum GMI1000 0.45 RS_RS13565 DNA helicase RecG 0.39 RS_RS00260 Tyrosine recombinase XerC 1 — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS05675 DNA helicase RecG 0.38 RALBFv3_RS09675 tyrosine recombinase XerC 0.33 43
Ralstonia solanacearum UW163 0.44 UW163_RS07950 DNA helicase RecG 0.38 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum PSI07 0.44 RPSI07_RS11625 DNA helicase RecG 0.40 RPSI07_RS23690 tyrosine recombinase XerC low > 81
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.40 ABZR87_RS05065 tyrosine recombinase XerC 0.65 6
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS17390 ATP-dependent DNA helicase RecG 0.37 RR42_RS00615 recombinase XerC 0.40 38
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.39 HSERO_RS21475 recombinase XerC low > 78
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.39 Ac3H11_1995 Tyrosine recombinase XerC low > 79
Castellaniella sp019104865 MT123 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.39 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.38 GFF547 Tyrosine recombinase XerC low > 90
Dechlorosoma suillum PS 0.41 Dsui_0311 ATP-dependent DNA helicase RecG 0.41 Dsui_0651 tyrosine recombinase XerC low > 51
Variovorax sp. OAS795 0.40 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.40 ABID97_RS06150 tyrosine recombinase XerC 0.70 1
Variovorax sp. SCN45 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.37 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Azospirillum sp. SherDot2 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG 0.25 MPMX19_02110 Tyrosine recombinase XerC — —
Phaeobacter inhibens DSM 17395 0.34 PGA1_c14380 ATP-dependent DNA helicase RecG 0.27 PGA1_c05760 putative tyrosine recombinase XerC 0.49 8
Sinorhizobium meliloti 1021 0.33 SMc00228 ATP-dependent DNA helicase RecG 0.26 SMc02489 site-specific tyrosine recombinase XerC — —
Azospirillum brasilense Sp245 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.26 AZOBR_RS03965 tyrosine recombinase XerC — —
Magnetospirillum magneticum AMB-1 0.33 AMB_RS12400 ATP-dependent DNA helicase RecG 0.27 AMB_RS21485 tyrosine recombinase XerC — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.28 Dshi_5002 xerC hypothetical protein (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.21 Ga0059261_2764 Site-specific recombinase XerD 0.31 21
Rhodospirillum rubrum S1H 0.30 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.29 Rru_A1220 Phage integrase (NCBI) — —
Fusobacterium nucleatum SB010 0.30 HUW76_01465 ATP-dependent DNA helicase RecG 0.13 HUW76_06795 tyrosine-type recombinase/integrase low > 35
Bosea sp. OAE506 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.27 ABIE41_RS07870 tyrosine recombinase XerC 0.51 9
Rhodopseudomonas palustris CGA009 0.30 TX73_013795 ATP-dependent DNA helicase RecG 0.28 TX73_000945 tyrosine recombinase XerC low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS04765 ATP-dependent DNA helicase RecG 0.26 A4249_RS12210 tyrosine recombinase XerC low > 48

Not shown: 15 genomes with orthologs for ECD_03509 only; 3 genomes with orthologs for ECD_03687 only