| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_01634 | | multidrug efflux system transporter | 1.0 | ECD_03492 | | formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase | 0.59 | 8 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_02061 | | Multidrug resistance protein MdtK | 1.00 | OHPLBJKB_00067 | | Formamidopyrimidine-DNA glycosylase | low | > 73 |
| Escherichia fergusonii Becca | 1.00 | EFB2_02329 | | Multidrug resistance protein MdtK | 1.00 | EFB2_00178 | | Formamidopyrimidine-DNA glycosylase | low | > 86 |
| Escherichia coli BW25113 | 1.00 | b1663 | mdtK | multidrug efflux protein NorM (NCBI) | 1.00 | b3635 | mutM | formamidopyrimidine-DNA glycosylase (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_17880 | mdtK | multidrug efflux MATE transporter MdtK | 1.00 | NOLOHH_07515 | mutM | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_16670 | mdtK | multidrug efflux MATE transporter MdtK | 1.00 | BNILDI_04000 | mutM | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | — | — |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_05745 | mdtK | multidrug efflux MATE transporter MdtK | 0.99 | HEPCGN_14460 | mutM | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 85 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS09270 | | multidrug efflux MATE transporter MdtK | 0.99 | ECOLIN_RS20715 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | — | — |
| Escherichia coli ECRC101 | 1.00 | OKFHMN_27360 | mdtK | multidrug efflux MATE transporter MdtK | 1.00 | OKFHMN_15635 | | Formamidopyrimidine-DNA glycosylase | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_00705 | mdtK | multidrug efflux MATE transporter MdtK | 1.00 | NIAGMN_13395 | | Formamidopyrimidine-DNA glycosylase | — | — |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_01950 | mdtK | multidrug efflux MATE transporter MdtK | 1.00 | JDDGAC_19260 | | Formamidopyrimidine-DNA glycosylase | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_18050 | mdtK | multidrug efflux MATE transporter MdtK | 1.00 | MCAODC_06145 | | Formamidopyrimidine-DNA glycosylase | — | — |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_00750 | mdtK | multidrug efflux MATE transporter MdtK | 1.00 | KEDOAH_12515 | | Formamidopyrimidine-DNA glycosylase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.92 | GFF3613 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.95 | GFF374 | | Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.91 | MPMX20_01973 | | Multidrug resistance protein MdtK | 0.93 | MPMX20_00100 | | Formamidopyrimidine-DNA glycosylase | low | > 85 |
| Klebsiella michiganensis M5al | 0.89 | BWI76_RS16535 | | MATE family efflux transporter | 0.92 | BWI76_RS27330 | | DNA-formamidopyrimidine glycosylase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.89 | EX28DRAFT_1660 | | putative efflux protein, MATE family | 0.90 | EX28DRAFT_3885 | | DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) | low | > 76 |
| Serratia liquefaciens MT49 | 0.77 | IAI46_11210 | | MATE family efflux transporter | 0.79 | IAI46_24810 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 86 |
| Pantoea sp. MT58 | 0.76 | IAI47_10820 | | MATE family efflux transporter | 0.81 | IAI47_00635 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.73 | HER17_RS09220 | | MATE family efflux transporter | 0.75 | HER17_RS20815 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.73 | HGI48_RS12700 | | MATE family efflux transporter | 0.73 | HGI48_RS00715 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 71 |
| Dickeya dianthicola ME23 | 0.73 | DZA65_RS13155 | | MATE family efflux transporter | 0.73 | DZA65_RS00770 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.72 | LU632_RS11170 | | MATE family efflux transporter | 0.82 | LU632_RS21975 | mutM | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 74 |
| Rahnella sp. WP5 | 0.72 | EX31_RS13855 | | MATE family efflux transporter | 0.79 | EX31_RS14455 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 89 |
| Vibrio cholerae E7946 ATCC 55056 | 0.56 | CSW01_07735 | | multidrug resistance protein NorM | 0.61 | CSW01_01175 | | formamidopyrimidine-DNA glycosylase | low | > 62 |
| Shewanella sp. ANA-3 | 0.50 | Shewana3_2039 | | MATE efflux family protein (RefSeq) | 0.53 | Shewana3_4084 | | formamidopyrimidine-DNA glycosylase (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.50 | Shew_2037 | | MATE efflux family protein (RefSeq) | 0.55 | Shew_3690 | | formamidopyrimidine-DNA glycosylase (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.50 | SO2295 | | MATE efflux family protein (NCBI ptt file) | 0.56 | SO4726 | mutM | formamidopyrimidine-DNA glycosylase (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.49 | Sama_1761 | | MATE efflux family protein (RefSeq) | 0.56 | Sama_0117 | | formamidopyrimidine-DNA glycosylase (RefSeq) | low | > 62 |
| Pseudomonas sp. S08-1 | 0.43 | OH686_02075 | | Na(+)/drug antiporter, MATE family of MDR efflux pumps | 0.50 | OH686_14125 | | DNA-formamidopyrimidine glycosylase | low | > 80 |
| Alteromonas macleodii MIT1002 | 0.42 | MIT1002_02233 | | Na(+)/drug antiporter | 0.57 | MIT1002_00057 | | Formamidopyrimidine-DNA glycosylase | low | > 70 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS07610 | | MATE family efflux transporter | 0.52 | PFLU_RS28515 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS07610 | | MATE family efflux transporter | 0.52 | PFLU_RS28515 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_4049 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.54 | PfGW456L13_979 | | Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_00550 | | MATE family efflux transporter | 0.54 | AO353_08320 | | 5-hydroxymethyluracil DNA glycosylase | low | > 101 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_01102 | | Multidrug resistance protein NorM | 0.54 | PFR28_04272 | | Formamidopyrimidine-DNA glycosylase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.41 | Pf1N1B4_3892 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.55 | Pf1N1B4_2309 | | Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_07530 | | multidrug transporter | 0.52 | PS417_26870 | | 5-hydroxymethyluracil DNA glycosylase | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_02370 | | MATE family efflux transporter | 0.51 | AO356_13270 | | 5-hydroxymethyluracil DNA glycosylase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_2298 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.52 | Pf6N2E2_4569 | | Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) | low | > 103 |
| Pseudomonas stutzeri RCH2 | 0.40 | Psest_2549 | | putative efflux protein, MATE family | 0.54 | Psest_0239 | | formamidopyrimidine-DNA glycosylase (fpg) | low | > 67 |
| Marinobacter adhaerens HP15 | 0.35 | HP15_3913 | | multidrug resistance protein NorM | 0.50 | HP15_3493 | | formamidopyrimidine-DNA glycosylase | low | > 73 |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS12525 | | MATE family efflux transporter | 0.52 | ABZR86_RS13335 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.30 | MPMX26_00306 | | Multidrug resistance protein NorM | 0.43 | MPMX26_02486 | | Formamidopyrimidine-DNA glycosylase | low | > 36 |
| Rhodanobacter denitrificans FW104-10B01 | 0.30 | LRK54_RS11085 | | MATE family efflux transporter | 0.51 | LRK54_RS10815 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.30 | LRK55_RS10790 | | MATE family efflux transporter | 0.51 | LRK55_RS10505 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.29 | OKGIIK_12790 | norM | MATE family efflux transporter | 0.51 | OKGIIK_13060 | mutM | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 52 |
| Kangiella aquimarina DSM 16071 | 0.26 | B158DRAFT_2495 | | putative efflux protein, MATE family | 0.56 | B158DRAFT_0778 | | DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) | 0.39 | 9 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.24 | Xcc-8004.4760.1 | | Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM | 0.52 | Xcc-8004.5281.1 | | Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.23 | HSERO_RS04300 | | multidrug transporter MatE | 0.47 | HSERO_RS19545 | | formamidopyrimidine-DNA glycosylase | low | > 78 |
| Paraburkholderia graminis OAS925 | 0.23 | ABIE53_002038 | | MATE family multidrug resistance protein | 0.46 | ABIE53_000711 | | formamidopyrimidine-DNA glycosylase | 0.26 | 35 |
| Lysobacter sp. OAE881 | 0.23 | ABIE51_RS02170 | | MATE family efflux transporter | 0.50 | ABIE51_RS00335 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.23 | ABZR87_RS10730 | | MATE family efflux transporter | 0.42 | ABZR87_RS07015 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.22 | RR42_RS13335 | | multidrug transporter MatE | 0.49 | RR42_RS02040 | | formamidopyrimidine-DNA glycosylase | low | > 128 |
| Burkholderia phytofirmans PsJN | 0.22 | BPHYT_RS09015 | | multidrug transporter MatE | 0.46 | BPHYT_RS02870 | | formamidopyrimidine-DNA glycosylase | low | > 109 |
| Ralstonia solanacearum UW163 | 0.22 | UW163_RS12570 | | MATE family efflux transporter | 0.44 | UW163_RS02455 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.22 | RALBFv3_RS15100 | | MATE family efflux transporter | 0.44 | RALBFv3_RS11125 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 76 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.22 | H281DRAFT_00822 | | multidrug resistance protein, MATE family | 0.46 | H281DRAFT_01934 | | DNA-(apurinic or apyrimidinic site) lyase | low | > 103 |
| Variovorax sp. OAS795 | 0.22 | ABID97_RS14630 | | MATE family efflux transporter | 0.39 | ABID97_RS23725 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 91 |
| Dinoroseobacter shibae DFL-12 | 0.22 | Dshi_0755 | | MATE efflux family protein (RefSeq) | 0.39 | Dshi_3369 | | formamidopyrimidine-DNA glycosylase (RefSeq) | low | > 64 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.21 | CA265_RS09325 | | MATE family efflux transporter | 0.12 | CA265_RS11980 | | formamidopyrimidine-DNA glycosylase | low | > 88 |
| Ralstonia solanacearum GMI1000 | 0.21 | RS_RS05915 | | MATE family efflux transporter | 0.45 | RS_RS01975 | | formamidopyrimidine-DNA glycosylase | low | > 80 |
| Sinorhizobium meliloti 1021 | 0.21 | SMc01211 | | hypothetical protein | 0.33 | SMc01154 | | formamidopyrimidine-DNA glycosylase | low | > 103 |
| Ralstonia solanacearum PSI07 | 0.21 | RPSI07_RS18275 | | MATE family efflux transporter | 0.45 | RPSI07_RS22175 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 81 |
| Rhodopseudomonas palustris CGA009 | 0.21 | TX73_004890 | | MATE family efflux transporter | 0.38 | TX73_000435 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 86 |
| Paraburkholderia sabiae LMG 24235 | 0.21 | QEN71_RS04380 | | MATE family efflux transporter | 0.47 | QEN71_RS01720 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 153 |
| Agrobacterium fabrum C58 | 0.20 | Atu2172 | | multidrug efflux protein | 0.33 | Atu0321 | | formamidopyrimidine-DNA glycosylase | low | > 89 |
| Rhizobium sp. OAE497 | 0.20 | ABIE40_RS12780 | | MATE family efflux transporter | 0.34 | ABIE40_RS01590 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 107 |
| Phaeobacter inhibens DSM 17395 | 0.20 | PGA1_c21310 | | multidrug resistance protein NorM | 0.40 | PGA1_c36490 | | formamidopyrimidine-DNA glycosylase MutM | low | > 62 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.19 | Psyr_0073 | | Multi antimicrobial extrusion protein MatE | 0.56 | Psyr_4761 | | DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.19 | Psyr_0073 | | Multi antimicrobial extrusion protein MatE | 0.56 | Psyr_4761 | | DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase | low | > 86 |
| Bosea sp. OAE506 | 0.19 | ABIE41_RS08515 | | MATE family efflux transporter | 0.35 | ABIE41_RS04205 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 77 |
| Rhodospirillum rubrum S1H | 0.19 | Rru_A0697 | | Multi antimicrobial extrusion protein MatE (NCBI) | 0.36 | Rru_A3799 | | DNA-formamidopyrimidine glycosylase (NCBI) | low | > 58 |
| Variovorax sp. SCN45 | 0.19 | GFF1099 | | Na+-driven multidrug efflux pump | 0.44 | GFF2353 | | Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) | low | > 127 |
| Synechococcus elongatus PCC 7942 | 0.19 | Synpcc7942_1699 | | MATE efflux family protein | 0.31 | Synpcc7942_1323 | fpg | DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase | low | > 38 |
| Pseudomonas putida KT2440 | 0.19 | PP_5262 | | Probable multidrug resistance protein NorM | 0.53 | PP_5125 | | Formamidopyrimidine-DNA glycosylase | low | > 96 |
| Dechlorosoma suillum PS | 0.16 | Dsui_1442 | | putative efflux protein, MATE family | 0.44 | Dsui_1031 | | formamidopyrimidine-DNA glycosylase Fpg | low | > 51 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.15 | A4249_RS03825 | | MATE family efflux transporter | 0.34 | A4249_RS14505 | | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | low | > 48 |
| Azospirillum brasilense Sp245 | 0.13 | AZOBR_RS15325 | | multidrug transporter | 0.39 | AZOBR_RS01270 | | 5-hydroxymethyluracil DNA glycosylase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.12 | MPMX19_01223 | | Multidrug resistance protein NorM | 0.37 | MPMX19_02764 | | Formamidopyrimidine-DNA glycosylase | low | > 112 |
| Caulobacter crescentus NA1000 | 0.11 | CCNA_02099 | | Na+ driven multidrug efflux pump | 0.34 | CCNA_03822 | | formamidopyrimidine-DNA glycosylase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.11 | CCNA_02099 | | Na+ driven multidrug efflux pump | 0.34 | CCNA_03822 | | formamidopyrimidine-DNA glycosylase | low | > 67 |
Not shown: 11 genomes with orthologs for ECD_01634 only; 6 genomes with orthologs for ECD_03492 only