Conservation of cofitness between ECD_02776 and ECD_02790 in Escherichia coli BL21

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 1.0 ECD_02790 tRNA m(7)G46 methyltransferase, SAM-dependent 0.70 20
Escherichia coli ECOR38 1.00 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 0.99 HEPCGN_18475 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 87
Escherichia coli ECRC98 1.00 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 JDDGAC_22835 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 1.00 OHPLBJKB_00756 tRNA (guanine-N(7)-)-methyltransferase low > 73
Escherichia coli ECRC101 1.00 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 MCAODC_09725 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 87
Escherichia coli ECRC102 1.00 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 NIAGMN_16970 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB — —
Escherichia coli ECRC100 1.00 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 OKFHMN_19205 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 80
Escherichia coli Nissle 1917 1.00 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 ECOLIN_RS16465 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 55
Escherichia coli ECOR27 1.00 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 NOLOHH_11065 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 75
Escherichia fergusonii Becca 1.00 EFB2_00956 Ribosomal RNA small subunit methyltransferase E 1.00 EFB2_00942 tRNA (guanine-N(7)-)-methyltransferase low > 86
Escherichia coli BW25113 1.00 b2946 yggJ orf, hypothetical protein (VIMSS) 1.00 b2960 yggH tRNA(m7G46)-methyltransferase (NCBI) low > 76
Escherichia coli ECRC99 1.00 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 KEDOAH_08935 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB — —
Escherichia coli ECRC62 1.00 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 BNILDI_09650 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.94 GFF3064 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.94 EX28DRAFT_2997 tRNA (guanine-N(7)-)-methyltransferase low > 76
Enterobacter sp. TBS_079 0.89 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.92 MPMX20_03817 tRNA (guanine-N(7)-)-methyltransferase 0.24 63
Klebsiella michiganensis M5al 0.86 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.91 BWI76_RS24150 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.17 47
Rahnella sp. WP5 0.85 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.80 EX31_RS02730 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 89
Serratia liquefaciens MT49 0.83 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.82 IAI46_21460 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 86
Pantoea sp. MT58 0.82 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.84 IAI47_03565 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 76
Dickeya dadantii 3937 0.81 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 DDA3937_RS04905 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 74
Dickeya dianthicola 67-19 0.79 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.82 HGI48_RS04915 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.83 DZA65_RS05250 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 75
Erwinia tracheiphila SCR3 0.79 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.82 LU632_RS05425 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 74
Pectobacterium carotovorum WPP14 0.78 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.82 HER17_RS16620 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 75
Shewanella sp. ANA-3 0.68 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.67 Shewana3_1182 trmB tRNA (guanine-N(7)-)-methyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.68 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) 0.66 SO3367 conserved hypothetical protein TIGR00091 (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.71 CSW01_02415 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 62
Shewanella amazonensis SB2B 0.66 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.67 Sama_2489 trmB tRNA (guanine-N(7)-)-methyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.65 Shew_3224 hypothetical protein (RefSeq) 0.66 Shew_1124 trmB tRNA (guanine-N(7))-methyltransferase (RefSeq) low > 60
Marinobacter adhaerens HP15 0.46 HP15_2926 ribosomal RNA small subunit methyltransferase E 0.52 HP15_278 tRNA (guanine-N(7)-)-methyltransferase low > 73
Alteromonas macleodii MIT1002 0.45 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E 0.65 MIT1002_00237 tRNA (guanine-N(7)-)-methyltransferase low > 70
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0180 RNA methyltransferase, RsmE family 0.61 B158DRAFT_0203 tRNA (guanine-N(7)-)-methyltransferase low > 40
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_08050 16S rRNA methyltransferase 0.58 AO353_08210 tRNA (guanine-N7)-methyltransferase low > 101
Pseudomonas fluorescens SBW25 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.58 PFLU_RS28415 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.67 34
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.58 PFLU_RS28415 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 109
Pseudomonas sp. RS175 0.42 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.59 PFR28_04251 tRNA (guanine-N(7)-)-methyltransferase low > 88
Pseudomonas putida KT2440 0.41 PP_4985 16S rRNA m3U1498 methyltransferase 0.59 PP_5103 tRNA (guanine-N(7)-)-methyltransferase low > 96
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_13565 16S rRNA methyltransferase 0.59 AO356_13380 tRNA (guanine-N7)-methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.59 Pf6N2E2_4591 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) low > 103
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.58 PfGW456L13_1001 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) low > 87
Pseudomonas simiae WCS417 0.41 PS417_26545 16S rRNA methyltransferase 0.58 PS417_26770 tRNA (guanine-N7)-methyltransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.58 Pf1N1B4_2332 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) — —
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.60 Psyr_4739 tRNA (guanine-N(7)-)-methyltransferase low > 86
Pseudomonas stutzeri RCH2 0.40 Psest_0305 RNA methyltransferase, RsmE family 0.57 Psest_0268 tRNA (guanine-N(7)-)-methyltransferase 0.24 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.60 Psyr_4739 tRNA (guanine-N(7)-)-methyltransferase low > 86
Pseudomonas sp. S08-1 0.39 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.59 OH686_14290 tRNA (guanine-N(7)-)-methyltransferase low > 80
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS10230 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.47 ABZR86_RS11650 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 74
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS04160 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.45 LRK54_RS11985 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 59
Acinetobacter radioresistens SK82 0.35 MPMX26_01001 Ribosomal RNA small subunit methyltransferase E 0.41 MPMX26_01105 tRNA (guanine-N(7)-)-methyltransferase low > 36
Rhodanobacter denitrificans MT42 0.35 LRK55_RS03930 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.45 LRK55_RS11710 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 63
Lysobacter sp. OAE881 0.35 ABIE51_RS05260 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.45 ABIE51_RS16550 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 62
Ralstonia solanacearum UW163 0.34 UW163_RS07745 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.47 UW163_RS00810 tRNA (guanosine(46)-N7)-methyltransferase TrmB — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS05880 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.47 RALBFv3_RS12755 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 76
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS16855 16S rRNA methyltransferase 0.50 BPHYT_RS15470 tRNA (guanine-N(7)-)-methyltransferase low > 109
Ralstonia solanacearum PSI07 0.34 RPSI07_RS11365 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.47 RPSI07_RS20505 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 81
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS17590 16S rRNA methyltransferase 0.48 RR42_RS15625 tRNA (guanine-N7)-methyltransferase low > 128
Dechlorosoma suillum PS 0.33 Dsui_1568 RNA methyltransferase, RsmE family 0.47 Dsui_1016 tRNA (guanine-N(7)-)-methyltransferase — —
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_11035 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.47 OKGIIK_11900 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 52
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.47 ABZR87_RS08805 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 80
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase 0.50 H281DRAFT_04036 tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) low > 103
Ralstonia solanacearum GMI1000 0.33 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.47 RS_RS03535 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 80
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.49 QEN71_RS03220 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.37 82
Acidovorax sp. GW101-3H11 0.32 Ac3H11_4323 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.46 Ac3H11_4163 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) low > 79
Paraburkholderia graminis OAS925 0.32 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase 0.50 ABIE53_003260 tRNA (guanine-N7-)-methyltransferase low > 113
Variovorax sp. SCN45 0.30 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) 0.45 GFF593 tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33) low > 127
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS07110 16S rRNA methyltransferase 0.49 HSERO_RS02470 tRNA (guanine-N7)-methyltransferase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.44 GFF5184 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) low > 90
Castellaniella sp019104865 MT123 0.27 ABCV34_RS15445 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 ABCV34_RS08995 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 48
Azospirillum sp. SherDot2 0.18 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E 0.15 MPMX19_02518 tRNA (guanine-N(7)-)-methyltransferase low > 112
Rhodopseudomonas palustris CGA009 0.17 TX73_005910 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.18 TX73_002295 tRNA (guanine(46)-N(7))-methyltransferase TrmB low > 86
Rhizobium sp. OAE497 0.17 ABIE40_RS03520 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.19 ABIE40_RS01670 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 107
Agrobacterium fabrum C58 0.17 Atu0657 hypothetical protein 0.19 Atu0363 putative tRNA (guanine-N(7)-)-methyltransferase low > 89
Sinorhizobium meliloti 1021 0.16 SMc00826 16S ribosomal RNA methyltransferase RsmE 0.17 SMc01108 tRNA (guanine-N(7)-)-methyltransferase 0.40 12
Sphingomonas koreensis DSMZ 15582 0.16 Ga0059261_0807 RNA methyltransferase, RsmE family 0.26 Ga0059261_1620 Predicted S-adenosylmethionine-dependent methyltransferase low > 68
Caulobacter crescentus NA1000 0.16 CCNA_03528 RNA methyltransferase 0.21 CCNA_00047 tRNA m7-G46 methyltransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.16 CCNA_03528 RNA methyltransferase 0.21 CCNA_00047 tRNA m7-G46 methyltransferase low > 67
Azospirillum brasilense Sp245 0.15 AZOBR_RS11890 16S rRNA methyltransferase 0.14 AZOBR_RS01440 tRNA (guanine-N(7)-)-methyltransferase — —
Magnetospirillum magneticum AMB-1 0.15 AMB_RS01240 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.19 AMB_RS22620 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 64
Mycobacterium tuberculosis H37Rv 0.15 Rv2372c Conserved hypothetical protein 0.27 Rv0208c Hypothetical methlytransferase (methylase) low > 58
Brevundimonas sp. GW460-12-10-14-LB2 0.13 A4249_RS00350 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.25 A4249_RS13980 tRNA (guanosine(46)-N7)-methyltransferase TrmB — —
Rhodospirillum rubrum S1H 0.13 Rru_A0571 hypothetical protein (NCBI) 0.19 Rru_A3777 hypothetical protein (NCBI) low > 58
Bifidobacterium breve UCC2003 0.11 BBR_RS15150 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.27 BBR_RS18245 tRNA (guanosine(46)-N7)-methyltransferase TrmB low > 34

Not shown: 17 genomes with orthologs for ECD_02776 only; 1 genomes with orthologs for ECD_02790 only