| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dechlorosoma suillum PS | 1.0 | Dsui_2385 | | transcription-repair coupling factor Mfd | 1.0 | Dsui_1810 | | DNA-binding protein, YbaB/EbfC family | 0.90 | 5 |
| Cupriavidus basilensis FW507-4G11 | 0.64 | RR42_RS07845 | | transcription-repair coupling factor | 0.73 | RR42_RS13280 | | hypothetical protein | — | — |
| Ralstonia sp. UNC404CL21Col | 0.64 | ABZR87_RS13240 | | transcription-repair coupling factor | 0.70 | ABZR87_RS10800 | | YbaB/EbfC family nucleoid-associated protein | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.64 | HSERO_RS15180 | | transcription-repair coupling factor | 0.75 | HSERO_RS18365 | | hypothetical protein | low | > 78 |
| Paraburkholderia graminis OAS925 | 0.64 | ABIE53_002095 | | transcription-repair coupling factor (superfamily II helicase) | 0.76 | ABIE53_002047 | | DNA-binding YbaB/EbfC family protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.64 | H281DRAFT_00880 | | transcription-repair coupling factor | 0.75 | H281DRAFT_00833 | | hypothetical protein | — | — |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS14755 | | transcription-repair coupling factor | 0.70 | UW163_RS12630 | | nucleoid-associated protein, YbaB/EbfC family | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS01445 | | transcription-repair coupling factor | 0.70 | RALBFv3_RS15160 | | nucleoid-associated protein, YbaB/EbfC family | — | — |
| Ralstonia solanacearum GMI1000 | 0.63 | RS_RS08275 | | transcription-repair coupling factor | 0.70 | RS_RS05975 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS09290 | | helicase | 0.75 | BPHYT_RS09060 | | hypothetical protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.63 | QEN71_RS22060 | | transcription-repair coupling factor | 0.76 | QEN71_RS22290 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS16040 | | transcription-repair coupling factor | 0.69 | RPSI07_RS18215 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Variovorax sp. OAS795 | 0.60 | ABID97_RS17285 | | transcription-repair coupling factor | 0.69 | ABID97_RS14695 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.59 | GFF4934 | | Transcription-repair coupling factor | 0.65 | GFF4252 | | FIG000557: hypothetical protein co-occurring with RecR | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.59 | Ac3H11_328 | | Transcription-repair coupling factor | 0.64 | Ac3H11_472 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Variovorax sp. SCN45 | 0.59 | GFF412 | | Transcription-repair coupling factor | 0.69 | GFF1109 | | Nucleoid-associated protein YaaK | — | — |
| Castellaniella sp019104865 MT123 | 0.55 | ABCV34_RS08660 | | transcription-repair coupling factor | 0.67 | ABCV34_RS15475 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Pseudomonas stutzeri RCH2 | 0.48 | Psest_1653 | | transcription-repair coupling factor (mfd) | 0.69 | Psest_2546 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_2278 | | Transcription-repair coupling factor | 0.66 | Pf6N2E2_2327 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Pseudomonas sp. S08-1 | 0.48 | OH686_21990 | | transcription-repair coupling factor | 0.71 | OH686_02390 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_02270 | | transcription-repair coupling factor | 0.66 | AO356_02505 | | nucleoid-associated protein | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_00435 | | transcription-repair coupling factor | 0.66 | AO353_00680 | | nucleoid-associated protein | — | — |
| Pseudomonas sp. RS175 | 0.47 | PFR28_01123 | | Transcription-repair-coupling factor | 0.67 | PFR28_01075 | | Nucleoid-associated protein YbaB | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_1896 | | transcription-repair coupling factor | 0.66 | Psyr_1826 | | Conserved hypothetical protein 103 | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_1896 | | transcription-repair coupling factor | 0.66 | Psyr_1826 | | Conserved hypothetical protein 103 | — | — |
| Pseudomonas simiae WCS417 | 0.47 | PS417_07635 | | transcription-repair coupling factor | 0.65 | PS417_20810 | | hypothetical protein | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_4027 | | Transcription-repair coupling factor | 0.64 | PfGW456L13_4076 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS07710 | | transcription-repair coupling factor | 0.65 | PFLU_RS22425 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS07710 | | transcription-repair coupling factor | 0.65 | PFLU_RS22425 | | YbaB/EbfC family nucleoid-associated protein | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_3916 | | Transcription-repair coupling factor | 0.66 | Pf1N1B4_3863 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Alteromonas macleodii MIT1002 | 0.46 | MIT1002_01646 | | Transcription-repair-coupling factor | 0.69 | MIT1002_02653 | | Nucleoid-associated protein YbaB | low | > 70 |
| Pseudomonas putida KT2440 | 0.46 | PP_2148 | | transcription-repair coupling factor | 0.70 | PP_4268 | | nucleoid-associated broad specificity regulator | low | > 96 |
| Kangiella aquimarina DSM 16071 | 0.46 | B158DRAFT_1800 | | transcription-repair coupling factor | 0.49 | B158DRAFT_2479 | | DNA-binding protein, YbaB/EbfC family | 0.83 | 1 |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS02040 | | transcription-repair coupling factor | 0.60 | LRK54_RS01255 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS01815 | | transcription-repair coupling factor | 0.61 | LRK55_RS01025 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21210 | | transcription-repair coupling factor | 0.59 | ABZR86_RS06240 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Marinobacter adhaerens HP15 | 0.45 | HP15_2257 | | transcription-repair-coupling factor | 0.61 | HP15_1884 | | protein belonging to uncharacterized protein family UPF0133 | — | — |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_2289 | | transcription-repair coupling factor (RefSeq) | 0.60 | Shewana3_2445 | | hypothetical protein (RefSeq) | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.44 | CSW01_09445 | | transcription-repair coupling factor | 0.65 | CSW01_05370 | | YbaB/EbfC family nucleoid-associated protein | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_09105 | mfd | transcription-repair coupling factor | 0.59 | OKGIIK_05650 | ybaB | YbaB/EbfC family nucleoid-associated protein | low | > 52 |
| Shewanella oneidensis MR-1 | 0.44 | SO2255 | mfd | transcription-repair coupling factor (NCBI ptt file) | 0.59 | SO2014 | | conserved hypothetical protein TIGR00103 (NCBI ptt file) | low | > 76 |
| Pantoea sp. MT58 | 0.44 | IAI47_11975 | | transcription-repair coupling factor | 0.62 | IAI47_14470 | | YbaB/EbfC family nucleoid-associated protein | low | > 76 |
| Escherichia coli ECOR38 | 0.44 | HEPCGN_24015 | mfd | transcription-repair coupling factor | 0.64 | HEPCGN_06775 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.44 | OHPLBJKB_02552 | | Transcription-repair-coupling factor | 0.64 | OHPLBJKB_03203 | | Nucleoid-associated protein YbaB | — | — |
| Escherichia coli ECRC62 | 0.44 | BNILDI_19160 | mfd | transcription-repair coupling factor | 0.64 | BNILDI_22510 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia fergusonii Becca | 0.44 | EFB2_02861 | | Transcription-repair-coupling factor | 0.64 | EFB2_03587 | | Nucleoid-associated protein YbaB | low | > 86 |
| Escherichia coli ECRC101 | 0.44 | MCAODC_22830 | mfd | transcription-repair coupling factor | 0.64 | MCAODC_27385 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli BW25113 | 0.44 | b1114 | mfd | transcription-repair coupling factor (NCBI) | 0.64 | b0471 | ybaB | hypothetical protein (NCBI) | 0.26 | 38 |
| Escherichia coli ECRC98 | 0.44 | JDDGAC_07130 | mfd | transcription-repair coupling factor | 0.64 | JDDGAC_11810 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECRC99 | 0.44 | KEDOAH_24285 | mfd | transcription-repair coupling factor | 0.64 | KEDOAH_19805 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECOR27 | 0.44 | NOLOHH_20995 | mfd | transcription-repair coupling factor | 0.64 | NOLOHH_01090 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECRC102 | 0.44 | NIAGMN_24360 | mfd | transcription-repair coupling factor | 0.64 | NIAGMN_06215 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECRC101 | 0.44 | OKFHMN_03470 | mfd | transcription-repair coupling factor | 0.64 | OKFHMN_08160 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli BL21 | 0.44 | ECD_01110 | | transcription-repair coupling factor | 0.64 | ECD_00422 | | DNA-binding protein, putative nucleoid-associated protein | — | — |
| Shewanella amazonensis SB2B | 0.43 | Sama_1330 | | transcription-repair coupling factor (RefSeq) | 0.62 | Sama_1311 | | hypothetical protein (RefSeq) | — | — |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_1816 | | transcription-repair coupling factor (mfd) | 0.60 | EX28DRAFT_2486 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS08775 | | transcription-repair coupling factor | 0.51 | HER17_RS15700 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF3397 | | Transcription-repair coupling factor | 0.64 | GFF4389 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Shewanella loihica PV-4 | 0.43 | Shew_1630 | | transcription-repair coupling factor (RefSeq) | 0.64 | Shew_2234 | | hypothetical protein (RefSeq) | — | — |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_01795 | | Transcription-repair-coupling factor | 0.59 | MPMX20_01073 | | Nucleoid-associated protein YbaB | low | > 85 |
| Erwinia tracheiphila SCR3 | 0.43 | LU632_RS14730 | mfd | transcription-repair coupling factor | 0.59 | LU632_RS18110 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS11205 | | transcription-repair coupling factor | 0.52 | BWI76_RS06825 | | nucleoid-associated protein, YbaB/EbfC family | — | — |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS14320 | | transcription-repair coupling factor | 0.59 | ABIE51_RS14015 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS13000 | | transcription-repair coupling factor | 0.64 | DDA3937_RS05785 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_01319 | | Transcription-repair-coupling factor | 0.48 | MPMX26_01644 | | Nucleoid-associated protein YbaB | low | > 36 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS13065 | | transcription-repair coupling factor | 0.64 | HGI48_RS05835 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS13530 | | transcription-repair coupling factor | 0.64 | DZA65_RS06160 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Rahnella sp. WP5 | 0.42 | EX31_RS24520 | | transcription-repair coupling factor | 0.64 | EX31_RS22520 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Serratia liquefaciens MT49 | 0.42 | IAI46_10320 | | transcription-repair coupling factor | 0.50 | IAI46_05235 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1775.1 | | Transcription-repair coupling factor | 0.60 | Xcc-8004.4013.1 | | FIG000557: hypothetical protein co-occurring with RecR | low | > 74 |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS12390 | | transcription-repair coupling factor | 0.44 | AMB_RS20750 | | YbaB/EbfC family nucleoid-associated protein | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.31 | Ga0059261_0960 | | transcription-repair coupling factor (mfd) | 0.37 | Ga0059261_0668 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_00876 | | Transcription-repair-coupling factor | 0.35 | MPMX19_02194 | | Nucleoid-associated protein YbaB | — | — |
| Rhodospirillum rubrum S1H | 0.30 | Rru_A1726 | | Transcription-repair coupling factor (NCBI) | 0.45 | Rru_A3472 | | hypothetical protein (NCBI) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.30 | TX73_013805 | | transcription-repair coupling factor | 0.39 | TX73_003190 | | YbaB/EbfC family nucleoid-associated protein | low | > 86 |
| Bosea sp. OAE506 | 0.29 | ABIE41_RS15825 | | transcription-repair coupling factor | 0.49 | ABIE41_RS04030 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_1561 | | transcription-repair coupling factor (RefSeq) | 0.41 | Dshi_0649 | | hypothetical protein (RefSeq) | 0.42 | 10 |
| Phaeobacter inhibens DSM 17395 | 0.29 | PGA1_c14920 | | transcription-repair-coupling factor Mfd | 0.38 | PGA1_c30280 | | DNA-binding protein, YbaB/EbfC family | low | > 62 |
| Agrobacterium fabrum C58 | 0.29 | Atu1778 | | transcription-repair coupling factor | 0.45 | Atu0095 | | hypothetical protein | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.29 | SMc04450 | | transcription-repair coupling factor | 0.39 | SMc02906 | | hypothetical protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS09310 | | transcription-repair coupling factor | 0.41 | ABIE40_RS00285 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.25 | Echvi_1312 | | transcription-repair coupling factor (mfd) | 0.30 | Echvi_4060 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.25 | DvMF_0285 | | transcription-repair coupling factor (RefSeq) | 0.35 | DvMF_2270 | | hypothetical protein (RefSeq) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.25 | DVU1903 | mfd | transcription-repair coupling factor (TIGR) | 0.33 | DVU3199 | | conserved hypothetical protein TIGR00103 (TIGR) | low | > 55 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.24 | CA264_15820 | | transcription-repair coupling factor | 0.30 | CA264_04550 | | nucleoid-associated protein, YbaB/EbfC family | low | > 74 |
Not shown: 11 genomes with orthologs for Dsui_2385 only; 3 genomes with orthologs for Dsui_1810 only