Conservation of cofitness between CSW01_01115 and CSW01_15330 in Vibrio cholerae E7946 ATCC 55056

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01115 ribonuclease PH 1.0 CSW01_15330 glycine dehydrogenase (decarboxylating) 0.39 15
Dickeya dianthicola ME23 0.78 DZA65_RS00730 ribonuclease PH 0.58 DZA65_RS03445 aminomethyl-transferring glycine dehydrogenase low > 75
Dickeya dianthicola 67-19 0.78 HGI48_RS00675 ribonuclease PH 0.58 HGI48_RS03400 aminomethyl-transferring glycine dehydrogenase low > 71
Dickeya dadantii 3937 0.77 DDA3937_RS20540 ribonuclease PH 0.58 DDA3937_RS03255 aminomethyl-transferring glycine dehydrogenase low > 74
Pectobacterium carotovorum WPP14 0.76 HER17_RS20855 ribonuclease PH 0.58 HER17_RS17995 aminomethyl-transferring glycine dehydrogenase low > 75
Erwinia amylovora T8 0.75 OLJFJH_05765 ribonuclease PH 0.59 OLJFJH_08785 aminomethyl-transferring glycine dehydrogenase 0.38 25
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF366 Ribonuclease PH (EC 2.7.7.56) 0.59 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 78
Enterobacter sp. TBS_079 0.74 MPMX20_00092 Ribonuclease PH 0.59 MPMX20_03762 Glycine dehydrogenase (decarboxylating) low > 85
Enterobacter asburiae PDN3 0.74 EX28DRAFT_3893 ribonuclease PH 0.59 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) low > 76
Erwinia tracheiphila SCR3 0.73 LU632_RS22020 rph ribonuclease PH 0.58 LU632_RS05915 gcvP aminomethyl-transferring glycine dehydrogenase low > 73
Erwinia tracheiphila HP pepo 2.2 0.73 IJEDHG_07755 rph ribonuclease PH 0.58 IJEDHG_03250 gcvP aminomethyl-transferring glycine dehydrogenase low > 61
Escherichia coli ECOR38 0.73 HEPCGN_14410 rph ribonuclease PH 0.59 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase low > 88
Escherichia coli ECRC98 0.73 JDDGAC_19215 rph ribonuclease PH 0.59 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase low > 87
Escherichia coli ECRC101 0.73 MCAODC_06100 rph ribonuclease PH 0.59 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00059 Ribonuclease PH 0.59 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) low > 74
Escherichia coli Nissle 1917 0.73 ECOLIN_RS20755 ribonuclease PH 0.59 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase low > 55
Serratia liquefaciens MT49 0.73 IAI46_24850 ribonuclease PH 0.58 IAI46_20850 aminomethyl-transferring glycine dehydrogenase 0.43 38
Escherichia coli ECRC62 0.73 BNILDI_04045 rph ribonuclease PH 0.59 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase low > 75
Escherichia coli BL21 0.73 ECD_03500 ribonuclease PH 0.59 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex low > 61
Klebsiella michiganensis M5al 0.73 BWI76_RS27390 ribonuclease PH 0.59 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 92
Pantoea sp. MT58 0.73 IAI47_00595 ribonuclease PH 0.59 IAI47_03775 aminomethyl-transferring glycine dehydrogenase low > 76
Escherichia coli ECRC100 0.73 OKFHMN_15590 rph ribonuclease PH 0.59 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase low > 79
Escherichia coli ECRC99 0.73 KEDOAH_12555 rph ribonuclease PH 0.59 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase — —
Escherichia coli ECRC102 0.73 NIAGMN_13350 rph ribonuclease PH 0.59 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase low > 80
Escherichia coli ECOR27 0.73 NOLOHH_07470 rph ribonuclease PH 0.59 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase low > 76
Escherichia fergusonii Becca 0.73 EFB2_00170 Ribonuclease PH 0.59 EFB2_00999 Glycine dehydrogenase (decarboxylating) low > 86
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13505_RS18750 ribonuclease PH 0.59 PagCFBP13505_RS15925 aminomethyl-transferring glycine dehydrogenase low > 74
Klebsiella pneumoniae MKP103 0.73 KDGMDA_08055 ribonuclease PH 0.59 KDGMDA_04370 aminomethyl-transferring glycine dehydrogenase low > 95
Rahnella sp. WP5 0.72 EX31_RS14505 ribonuclease PH 0.58 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase low > 89
Alteromonas macleodii MIT1002 0.71 MIT1002_04071 Ribonuclease PH 0.63 MIT1002_02971 Glycine dehydrogenase [decarboxylating] 0.49 68
Shewanella sp. ANA-3 0.71 Shewana3_3777 RNAse PH (RefSeq) 0.58 Shewana3_3499 glycine dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.70 SO4256 rph ribonuclease PH (NCBI ptt file) 0.58 SO0781 gcvP glycine cleavage system P protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.70 Shew_3488 ribonuclease PH (RefSeq) 0.59 Shew_3062 glycine dehydrogenase (RefSeq) low > 60
Escherichia coli BW25113 0.70 b3643 rph ribonuclease PH (NCBI) 0.59 b2903 gcvP glycine dehydrogenase (NCBI) 0.29 5
Shewanella amazonensis SB2B 0.69 Sama_0320 tRNA nucleotidyltransferase (RefSeq) 0.58 Sama_2719 glycine dehydrogenase (RefSeq) low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF3254 Ribonuclease PH (EC 2.7.7.56) 0.54 GFF5215 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 90
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_0588 ribonuclease PH 0.59 B158DRAFT_0545 glycine dehydrogenase (decarboxylating) — —
Pseudomonas aeruginosa PA14 0.65 IKLFDK_26785 ribonuclease PH 0.57 IKLFDK_27405 aminomethyl-transferring glycine dehydrogenase low > 98
Pseudomonas aeruginosa MRSN321 0.65 DY961_RS12560 rph;go_function=tRNA-specific ribonuclease PH 0.57 DY961_RS11935 gcvP;go_function=glycine aminomethyl-transferring glycine dehydrogenase low > 100
Pseudomonas aeruginosa PUPa3 0.65 DQ20_RS49565 rph;go_function=tRNA-specific ribonuclease PH 0.57 DQ20_RS50180 gcvP;go_function=glycine aminomethyl-transferring glycine dehydrogenase low > 101
Pseudomonas sp. SVBP6 0.64 COO64_RS01510 rph ribonuclease PH 0.58 COO64_RS00950 gcvP aminomethyl-transferring glycine dehydrogenase low > 93
Pseudomonas sp. S08-1 0.64 OH686_13570 ribonuclease PH 0.60 OH686_11165 glycine dehydrogenase low > 80
Pseudomonas sp. BP01 0.64 JOY50_RS09025 rph ribonuclease PH 0.59 JOY50_RS22405 gcvP aminomethyl-transferring glycine dehydrogenase low > 84
Dechlorosoma suillum PS 0.64 Dsui_0494 ribonuclease PH 0.60 Dsui_2737 glycine dehydrogenase, decarboxylating low > 51
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_0213 RNAse PH 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit low > 86
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) 0.59 Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 87
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_0213 RNAse PH 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit low > 86
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) 0.56 Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 103
Pseudomonas segetis P6 0.64 ACVTMO_RS00150 rph ribonuclease PH 0.59 ACVTMO_RS22225 gcvP aminomethyl-transferring glycine dehydrogenase low > 75
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_09260 ribonuclease PH 0.58 AO353_08720 glycine dehydrogenase low > 101
Pseudomonas lactucae CFBP13502 0.64 GEMAOFIL_00030 Ribonuclease PH 0.57 GEMAOFIL_04608 Glycine dehydrogenase (decarboxylating) low > 96
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) 0.58 PfGW456L13_904 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 87
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_12500 ribonuclease PH 0.56 AO356_18170 glycine dehydrogenase low > 104
Pseudomonas putida KT2440 0.64 PP_5294 Ribonuclease PH 0.58 PP_5192 glycine dehydrogenase low > 96
Pseudomonas sp. RS175 0.63 PFR28_04420 Ribonuclease PH 0.56 PFR28_03383 Glycine dehydrogenase (decarboxylating) low > 88
Pseudomonas orientalis W4I3 0.63 QF045_RS02165 ribonuclease PH 0.57 QF045_RS24485 aminomethyl-transferring glycine dehydrogenase low > 93
Pseudomonas stutzeri RCH2 0.63 Psest_3813 ribonuclease PH 0.60 Psest_0183 glycine dehydrogenase (decarboxylating) low > 67
Variovorax sp. SCN45 0.63 GFF2381 Ribonuclease PH (EC 2.7.7.56) 0.56 GFF6478 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 127
Pseudomonas fluorescens SBW25 0.63 PFLU_RS29490 ribonuclease PH 0.57 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase low > 109
Pseudomonas simiae WCS417 0.63 PS417_27810 ribonuclease PH 0.57 PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 88
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS29490 ribonuclease PH 0.57 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase low > 109
Pseudomonas sp. DMC3 0.63 GFF415 Ribonuclease PH 0.58 GFF308 Glycine dehydrogenase (decarboxylating) low > 89
Variovorax sp. OAS795 0.63 ABID97_RS23640 ribonuclease PH 0.56 ABID97_RS19655 aminomethyl-transferring glycine dehydrogenase low > 91
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS11900 ribonuclease PH 0.57 ABZR86_RS08305 aminomethyl-transferring glycine dehydrogenase low > 74
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.1221.1 Ribonuclease PH (EC 2.7.7.56) 0.55 Xcc-8004.3878.1 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 74
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS03645 ribonuclease PH 0.57 QEN71_RS29215 aminomethyl-transferring glycine dehydrogenase low > 153
Acidovorax sp. GW101-3H11 0.60 Ac3H11_3670 Ribonuclease PH (EC 2.7.7.56) 0.54 Ac3H11_167 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 79
Rhodopseudomonas palustris CGA009 0.60 TX73_001710 ribonuclease PH 0.57 TX73_019935 aminomethyl-transferring glycine dehydrogenase low > 86
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS15325 ribonuclease PH 0.58 BPHYT_RS19330 glycine cleavage system P protein (EC 1.4.4.2) (from data) low > 109
Paraburkholderia graminis OAS925 0.60 ABIE53_003234 ribonuclease PH 0.58 ABIE53_000238 glycine dehydrogenase low > 113
Sinorhizobium meliloti 1021 0.60 SMc01144 ribonuclease PH 0.55 SMc02049 glycine dehydrogenase low > 103
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_04008 RNAse PH 0.58 H281DRAFT_02409 glycine dehydrogenase low > 103
Rhodanobacter denitrificans MT42 0.59 LRK55_RS11470 ribonuclease PH 0.56 LRK55_RS00260 aminomethyl-transferring glycine dehydrogenase low > 63
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_12150 rph ribonuclease PH 0.55 OKGIIK_06740 gcvP2 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain — —
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS11745 ribonuclease PH 0.56 LRK54_RS00520 aminomethyl-transferring glycine dehydrogenase low > 59
Rhodanobacter sp000427505 FW510-R12 0.59 LRK53_RS16795 ribonuclease PH 0.54 LRK53_RS09610 aminomethyl-transferring glycine dehydrogenase — —
Agrobacterium fabrum C58 0.59 Atu0327 ribonuclease PH 0.54 Atu1462 glycine cleavage system protein P2 — —
Lysobacter sp. OAE881 0.59 ABIE51_RS17285 ribonuclease PH 0.55 ABIE51_RS14345 aminomethyl-transferring glycine dehydrogenase low > 62
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS04890 ribonuclease PH 0.56 RR42_RS20070 glycine dehydrogenase low > 128
Rhizobium sp. OAE497 0.59 ABIE40_RS01640 ribonuclease PH 0.54 ABIE40_RS09950 aminomethyl-transferring glycine dehydrogenase low > 107
Ralstonia solanacearum PSI07 0.58 RPSI07_RS13840 ribonuclease PH 0.57 RPSI07_RS08575 glycine dehydrogenase (aminomethyl-transferring) — —
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS15255 ribonuclease PH 0.56 ABZR87_RS03935 aminomethyl-transferring glycine dehydrogenase low > 80
Ralstonia solanacearum GMI1000 0.58 RS_RS10830 ribonuclease PH 0.56 RS_RS16510 glycine dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS03345 ribonuclease PH 0.57 RALBFv3_RS08660 glycine dehydrogenase (aminomethyl-transferring) low > 76
Ralstonia solanacearum UW163 0.57 UW163_RS10375 ribonuclease PH 0.57 UW163_RS04950 glycine dehydrogenase (aminomethyl-transferring) — —
Castellaniella sp019104865 MT123 0.57 ABCV34_RS03515 ribonuclease PH 0.54 ABCV34_RS08835 aminomethyl-transferring glycine dehydrogenase 0.65 41
Dinoroseobacter shibae DFL-12 0.54 Dshi_3463 ribonuclease PH (RefSeq) 0.55 Dshi_2680 glycine dehydrogenase (RefSeq) low > 64
Synechococcus elongatus PCC 7942 0.53 Synpcc7942_1073 rph ribonuclease PH 0.53 Synpcc7942_2047 gcvP glycine dehydrogenase low > 38
Mycobacterium tuberculosis H37Rv 0.52 Rv1340 Probable ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase) 0.51 Rv1832 Probable glycine dehydrogenase GcvB (glycine decarboxylase) (glycine cleavage system P-protein) — —
Phaeobacter inhibens DSM 17395 0.52 PGA1_c35030 ribonuclease PH 0.56 PGA1_78p00310 glycine dehydrogenase — —

Not shown: 17 genomes with orthologs for CSW01_01115 only; 12 genomes with orthologs for CSW01_15330 only