Conservation of cofitness between CSW01_09655 and CSW01_13285 in Vibrio cholerae E7946 ATCC 55056

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09655 SELO family protein 1.0 CSW01_13285 ribulose-phosphate 3-epimerase 0.81 17
Marinobacter adhaerens HP15 0.47 HP15_1144 protein belonging to uncharacterized protein family UPF0061 0.69 HP15_3286 ribulose-phosphate 3-epimerase-like protein — —
Pseudomonas sp. RS175 0.45 PFR28_05043 Protein adenylyltransferase SelO 0.70 PFR28_04049 Ribulose-phosphate 3-epimerase — —
Klebsiella michiganensis M5al 0.45 BWI76_RS17085 hypothetical protein 0.77 BWI76_RS26070 ribulose-phosphate 3-epimerase — —
Enterobacter sp. TBS_079 0.44 MPMX20_01907 Protein adenylyltransferase SelO 0.77 MPMX20_04275 Ribulose-phosphate 3-epimerase low > 85
Serratia liquefaciens MT49 0.44 IAI46_11065 YdiU family protein 0.76 IAI46_23685 ribulose-phosphate 3-epimerase low > 87
Erwinia amylovora T8 0.44 OLJFJH_14650 YdiU family protein 0.76 OLJFJH_04075 ribulose-phosphate 3-epimerase — —
Dickeya dadantii 3937 0.44 DDA3937_RS12935 YdiU family protein 0.75 DDA3937_RS19530 ribulose-phosphate 3-epimerase — —
Pseudomonas putida KT2440 0.44 PP_5068 conserved protein of unknown function, UPF0061 family 0.71 PP_0415 ribulose-5-phosphate 3-epimerase — —
Klebsiella pneumoniae MKP103 0.44 KDGMDA_24305 protein adenylyltransferase SelO 0.78 KDGMDA_06895 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola ME23 0.44 DZA65_RS13470 YdiU family protein 0.76 DZA65_RS20745 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. BP01 0.44 JOY50_RS09370 selO protein adenylyltransferase SelO 0.71 JOY50_RS18210 rpe ribulose-phosphate 3-epimerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF3534 Selenoprotein O and cysteine-containing homologs 0.76 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 78
Enterobacter asburiae PDN3 0.44 EX28DRAFT_1713 Uncharacterized conserved protein 0.78 EX28DRAFT_4156 ribulose-phosphate 3-epimerase low > 76
Escherichia coli BL21 0.44 ECD_01675 UPF0061 family protein 0.77 ECD_03238 D-ribulose-5-phosphate 3-epimerase low > 61
Pectobacterium carotovorum WPP14 0.44 HER17_RS08850 YdiU family protein 0.76 HER17_RS01795 ribulose-phosphate 3-epimerase low > 75
Dickeya dianthicola 67-19 0.44 HGI48_RS13010 YdiU family protein 0.76 HGI48_RS19660 ribulose-phosphate 3-epimerase — —
Escherichia coli BW25113 0.44 b1706 ydiU hypothetical protein (NCBI) 0.77 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) low > 76
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_12770 hypothetical protein 0.70 AO353_07240 ribulose phosphate epimerase — —
Pseudomonas lactucae CFBP13502 0.43 GEMAOFIL_00665 Protein adenylyltransferase SelO 0.71 GEMAOFIL_05267 Ribulose-phosphate 3-epimerase low > 96
Pantoea agglomerans CFBP13505 P0401 0.43 PagCFBP13505_RS17670 YdiU family protein 0.76 PagCFBP13505_RS21685 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. S08-1 0.43 OH686_09805 UPF0061 protein YdiU 0.70 OH686_15115 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_231 Selenoprotein O and cysteine-containing homologs 0.70 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Escherichia coli ECOR27 0.43 NOLOHH_17645 selO protein adenylyltransferase SelO 0.77 NOLOHH_08920 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECOR38 0.43 HEPCGN_05490 selO protein adenylyltransferase SelO 0.77 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase low > 88
Escherichia fergusonii Becca 0.43 EFB2_02285 Protein adenylyltransferase SelO 0.77 EFB2_00442 Ribulose-phosphate 3-epimerase — —
Escherichia coli Nissle 1917 0.43 ECOLIN_RS09535 protein adenylyltransferase SelO 0.77 ECOLIN_RS19345 ribulose-phosphate 3-epimerase low > 55
Pseudomonas simiae WCS417 0.43 PS417_02140 hypothetical protein 0.71 PS417_25735 ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC101 0.43 MCAODC_18285 selO protein adenylyltransferase SelO 0.77 MCAODC_07660 dam adenine-specific DNA-methyltransferase — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_09050 hypothetical protein 0.70 AO356_14410 ribulose phosphate epimerase — —
Pseudomonas orientalis W4I3 0.43 QF045_RS05205 YdiU family protein 0.70 QF045_RS00135 ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC100 0.43 OKFHMN_27125 selO protein adenylyltransferase SelO 0.77 OKFHMN_17130 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC99 0.43 KEDOAH_00985 selO protein adenylyltransferase SelO 0.77 KEDOAH_11010 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC98 0.43 JDDGAC_01700 selO protein adenylyltransferase SelO 0.77 JDDGAC_20760 dam adenine-specific DNA-methyltransferase — —
Pantoea sp. MT58 0.43 IAI47_10920 YdiU family protein 0.76 IAI47_01910 ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC102 0.43 NIAGMN_00940 selO protein adenylyltransferase SelO 0.77 NIAGMN_14900 dam adenine-specific DNA-methyltransferase — —
Pseudomonas segetis P6 0.43 MPMX49_04221 Protein adenylyltransferase SelO 0.71 MPMX49_00887 Ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_1498 Selenoprotein O and cysteine-containing homologs 0.71 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Rahnella sp. WP5 0.43 EX31_RS13970 YdiU family protein 0.74 EX31_RS04705 ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa PUPa3 0.42 DQ20_RS51140 YdiU family protein 0.70 DQ20_RS36285 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_3692 Selenoprotein O and cysteine-containing homologs 0.71 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas aeruginosa PA14 0.42 IKLFDK_28420 YdiU family protein 0.70 IKLFDK_22375 ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa MRSN321 0.42 DY961_RS10935 YdiU family protein 0.70 DY961_RS23065 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25 0.42 PFLU_RS02195 YdiU family protein 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS02195 YdiU family protein 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS11220 hypothetical protein 0.67 HSERO_RS19425 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. SVBP6 0.42 COO64_RS13240 selO protein adenylyltransferase SelO 0.71 COO64_RS22440 rpe ribulose-phosphate 3-epimerase low > 93
Pseudomonas stutzeri RCH2 0.42 Psest_0396 Uncharacterized conserved protein 0.71 Psest_3652 ribulose-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0494 Protein of unknown function UPF0061 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0494 Protein of unknown function UPF0061 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas sp. DMC3 0.41 GFF3135 Protein adenylyltransferase SelO 0.69 GFF22 Ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila HP pepo 2.2 0.41 IJEDHG_25400 YdiU family protein 0.76 IJEDHG_12050 rpe ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila SCR3 0.41 LU632_RS10980 YdiU family protein 0.76 LU632_RS22850 rpe ribulose-phosphate 3-epimerase — —
Acidovorax sp. GW101-3H11 0.41 Ac3H11_2534 Selenoprotein O and cysteine-containing homologs 0.57 Ac3H11_757 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Ralstonia solanacearum UW163 0.41 UW163_RS14490 YdiU family protein 0.64 UW163_RS07150 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS01180 YdiU family protein 0.64 RALBFv3_RS06475 ribulose-phosphate 3-epimerase — —
Shewanella loihica PV-4 0.41 Shew_0262 hypothetical protein (RefSeq) 0.77 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) — —
Ralstonia solanacearum GMI1000 0.40 RS_RS08830 YdiU family protein 0.63 RS_RS14420 ribulose-phosphate 3-epimerase — —
Variovorax sp. OAS795 0.40 ABID97_RS15700 protein adenylyltransferase SelO 0.59 ABID97_RS04905 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS16295 YdiU family protein 0.64 RPSI07_RS10765 ribulose-phosphate 3-epimerase — —
Shewanella oneidensis MR-1 0.40 SO0330 conserved hypothetical protein (NCBI ptt file) 0.78 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS12630 protein adenylyltransferase SelO 0.64 ABZR87_RS02130 ribulose-phosphate 3-epimerase — —
Shewanella sp. ANA-3 0.40 Shewana3_3841 hypothetical protein (RefSeq) 0.78 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) — —
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS09550 hypothetical protein 0.67 BPHYT_RS17380 ribulose-phosphate 3-epimerase low > 109
Variovorax sp. SCN45 0.39 GFF1330 UPF0061 protein YdiU 0.59 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 127
Paraburkholderia graminis OAS925 0.39 ABIE53_002149 uncharacterized protein YdiU (UPF0061 family) 0.66 ABIE53_003638 ribulose-phosphate 3-epimerase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_00914 Uncharacterized conserved protein YdiU, UPF0061 family 0.66 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase low > 103
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS21900 YdiU family protein 0.66 QEN71_RS27540 ribulose-phosphate 3-epimerase — —
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS11160 hypothetical protein 0.68 RR42_RS18285 ribulose-phosphate 3-epimerase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4580 Selenoprotein O and cysteine-containing homologs 0.60 GFF2197 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 90
Acinetobacter radioresistens SK82 0.34 MPMX26_02624 Protein adenylyltransferase SelO 0.73 MPMX26_02569 Ribulose-phosphate 3-epimerase — —
Rhodopseudomonas palustris CGA009 0.33 TX73_015750 YdiU family protein 0.39 TX73_019755 ribulose-phosphate 3-epimerase — —
Acinetobacter baumannii LAC-4 0.33 RR41_RS03080 YdiU family protein 0.75 RR41_RS15745 ribulose-phosphate 3-epimerase — —
Rhizobium sp. OAE497 0.33 ABIE40_RS04755 protein adenylyltransferase SelO 0.44 ABIE40_RS10105 ribulose-phosphate 3-epimerase — —
Xanthobacter sp. DMC5 0.33 GFF2077 Protein adenylyltransferase SelO 0.57 GFF2441 Ribulose-phosphate 3-epimerase — —
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS00335 protein adenylyltransferase SelO 0.71 ABZR86_RS12200 ribulose-phosphate 3-epimerase low > 74
Castellaniella sp019104865 MT123 0.32 ABCV34_RS04315 YdiU family protein 0.59 ABCV34_RS10270 ribulose-phosphate 3-epimerase — —
Agrobacterium fabrum C58 0.32 Atu0945 hypothetical protein 0.45 Atu1839 ribulose-phosphate 3-epimerase — —
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_09030 selO YdiU family protein 0.62 OKGIIK_12435 rpe ribulose-phosphate 3-epimerase — —
Sinorhizobium meliloti 1021 0.31 SMc00453 hypothetical protein 0.44 SMc00511 D-ribulose-5-phosphate 3-epimerase low > 103
Rhodanobacter denitrificans MT42 0.31 LRK55_RS15710 YdiU family protein 0.64 LRK55_RS11120 ribulose-phosphate 3-epimerase — —
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS15955 YdiU family protein 0.63 LRK54_RS11390 ribulose-phosphate 3-epimerase — —
Lysobacter sp. OAE881 0.31 ABIE51_RS12255 protein adenylyltransferase SelO 0.66 ABIE51_RS04135 ribulose-phosphate 3-epimerase — —
Rhodanobacter sp000427505 FW510-R12 0.31 LRK53_RS12815 YdiU family protein 0.66 LRK53_RS17105 ribulose-phosphate 3-epimerase 0.39 16
Shewanella amazonensis SB2B 0.30 Sama_2755 hypothetical protein (RefSeq) 0.77 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.2272.1 Selenoprotein O and cysteine-containing homologs 0.64 Xcc-8004.605.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.30 CA264_03360 hypothetical protein 0.42 CA264_21180 ribulose-phosphate 3-epimerase low > 74
Dechlorosoma suillum PS 0.29 Dsui_1465 hypothetical protein 0.66 Dsui_0221 ribulose-phosphate 3-epimerase — —
Cellulophaga baltica 18 0.29 M666_RS02400 YdiU family protein 0.41 M666_RS08505 ribulose-phosphate 3-epimerase — —
Dinoroseobacter shibae DFL-12 0.29 Dshi_1157 protein of unknown function UPF0061 (RefSeq) 0.41 Dshi_3006 Ribulose-phosphate 3-epimerase (RefSeq) — —
Methylophilus sp. DMC18 0.28 GFF616 Protein adenylyltransferase SelO 0.64 GFF2051 Ribulose-phosphate 3-epimerase — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c11360 Uncharacterized conserved protein 0.42 PGA1_c04170 ribulose-phosphate 3-epimerase Rpe — —
Alteromonas macleodii MIT1002 0.15 MIT1002_03272 hypothetical protein 0.74 MIT1002_00441 Ribulose-phosphate 3-epimerase — —

Not shown: 1 genomes with orthologs for CSW01_09655 only; 30 genomes with orthologs for CSW01_13285 only