Conservation of cofitness between CSW01_00650 and CSW01_05630 in Vibrio cholerae E7946 ATCC 55056

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00650 tyrosine recombinase XerC 1.0 CSW01_05630 replication-associated recombination protein A 0.70 13
Dickeya dadantii 3937 0.56 DDA3937_RS19890 tyrosine recombinase XerC 0.73 DDA3937_RS09605 replication-associated recombination protein A — —
Dickeya dianthicola 67-19 0.56 HGI48_RS20045 tyrosine recombinase XerC 0.73 HGI48_RS09620 replication-associated recombination protein A low > 71
Dickeya dianthicola ME23 0.56 DZA65_RS21090 tyrosine recombinase XerC 0.73 DZA65_RS09930 replication-associated recombination protein A low > 75
Rahnella sp. WP5 0.56 EX31_RS15165 tyrosine recombinase XerC 0.71 EX31_RS18515 replication-associated recombination protein A low > 89
Klebsiella michiganensis M5al 0.55 BWI76_RS01210 tyrosine recombinase XerC 0.73 BWI76_RS09670 recombination factor protein RarA low > 92
Serratia liquefaciens MT49 0.55 IAI46_00725 tyrosine recombinase XerC 0.70 IAI46_08570 replication-associated recombination protein A low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF239 Tyrosine recombinase XerC 0.73 GFF4896 FIG065221: Holliday junction DNA helicase — —
Escherichia coli BL21 0.55 ECD_03687 site-specific tyrosine recombinase 0.73 ECD_00896 recombination intermediate processing DNA-dependent ATPase low > 61
Escherichia coli ECRC99 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC 0.73 KEDOAH_22175 rarA replication-associated recombination protein RarA — —
Escherichia coli ECRC100 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC 0.73 OKFHMN_05560 rarA replication-associated recombination protein RarA low > 80
Escherichia coli ECRC101 0.55 MCAODC_04925 xerC tyrosine recombinase XerC 0.73 MCAODC_24950 rarA replication-associated recombination protein RarA — —
Escherichia coli ECRC98 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC 0.73 JDDGAC_09370 rarA replication-associated recombination protein RarA — —
Escherichia coli ECRC102 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC 0.73 NIAGMN_03280 rarA replication-associated recombination protein RarA — —
Escherichia coli ECOR27 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC 0.72 NOLOHH_22130 rarA replication-associated recombination protein RarA low > 75
Escherichia coli BW25113 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.73 b0892 ycaJ recombination protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.54 ECOLIN_RS21875 tyrosine recombinase XerC 0.73 ECOLIN_RS04745 replication-associated recombination protein RarA low > 55
Escherichia coli ECOR38 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC 0.73 HEPCGN_22950 rarA replication-associated recombination protein RarA low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC 0.73 OHPLBJKB_02776 Replication-associated recombination protein A low > 73
Escherichia fergusonii Becca 0.54 EFB2_04826 Tyrosine recombinase XerC 0.73 EFB2_03169 Replication-associated recombination protein A low > 86
Escherichia coli ECRC62 0.54 BNILDI_04985 xerC tyrosine recombinase XerC 0.72 BNILDI_20385 rarA replication-associated recombination protein RarA low > 75
Enterobacter asburiae PDN3 0.54 EX28DRAFT_4480 tyrosine recombinase XerC 0.72 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase — —
Erwinia amylovora T8 0.54 OLJFJH_06415 tyrosine recombinase XerC 0.71 OLJFJH_16170 recombination factor protein RarA low > 58
Pectobacterium carotovorum WPP14 0.54 HER17_RS01350 tyrosine recombinase XerC 0.72 HER17_RS12345 replication-associated recombination protein A low > 75
Erwinia tracheiphila SCR3 0.53 LU632_RS24135 xerC tyrosine recombinase XerC 0.69 LU632_RS09755 replication-associated recombination protein A — —
Pantoea sp. MT58 0.53 IAI47_18400 tyrosine recombinase XerC 0.73 IAI47_12900 replication-associated recombination protein A low > 76
Enterobacter sp. TBS_079 0.52 MPMX20_04465 Tyrosine recombinase XerC 0.72 MPMX20_01554 Replication-associated recombination protein A low > 85
Shewanella sp. ANA-3 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.63 Shewana3_2052 recombination factor protein RarA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.63 SO2308 ATPase, AAA family (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) 0.61 Sama_1774 recombination factor protein RarA (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.45 MIT1002_00157 Tyrosine recombinase XerC 0.59 MIT1002_02178 Replication-associated recombination protein A low > 70
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.55 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase low > 40
Shewanella loihica PV-4 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.64 Shew_2022 recombination factor protein RarA (RefSeq) low > 60
Marinobacter adhaerens HP15 0.44 HP15_250 site-specific tyrosine recombinase XerC 0.57 HP15_1817 recombination factor protein RarA low > 73
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.48 Xcc-8004.2744.1 FIG065221: Holliday junction DNA helicase — —
Methylophilus sp. DMC18 0.40 GFF1535 Tyrosine recombinase XerC 0.49 GFF351 Replication-associated recombination protein A low > 43
Pseudomonas stutzeri RCH2 0.40 Psest_3767 tyrosine recombinase XerC 0.55 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase low > 67
Pseudomonas aeruginosa PA14 0.40 IKLFDK_27050 tyrosine recombinase XerC 0.55 IKLFDK_13115 recombination factor protein RarA low > 101
Pseudomonas sp. SVBP6 0.39 COO64_RS01270 xerC tyrosine recombinase XerC 0.57 COO64_RS24170 replication-associated recombination protein A low > 93
Pseudomonas sp. BP01 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC 0.57 JOY50_RS06525 replication-associated recombination protein A low > 84
Pseudomonas putida KT2440 0.39 PP_5230 Tyrosine recombinase XerC 0.57 PP_4002 DNA-dependent ATPase required for recombination low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.57 Psyr_3177 Recombination protein MgsA low > 86
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.57 Psyr_3177 Recombination protein MgsA low > 86
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_842 Tyrosine recombinase XerC 0.55 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase low > 87
Pseudomonas sp. S08-1 0.38 OH686_13785 tyrosine recombinase XerC 0.56 OH686_00270 Replication-associated recombination protein RarA low > 80
Pseudomonas sp. DMC3 0.38 GFF370 Tyrosine recombinase XerC 0.56 GFF1532 Replication-associated recombination protein A low > 89
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC 0.56 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase low > 103
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_12725 recombinase XerC 0.57 AO356_22185 recombination factor protein RarA low > 104
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC 0.56 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase low > 87
Lysobacter sp. OAE881 0.38 ABIE51_RS03035 tyrosine recombinase XerC 0.45 ABIE51_RS11445 replication-associated recombination protein A 0.71 39
Rhodanobacter denitrificans MT42 0.38 LRK55_RS08300 tyrosine recombinase XerC 0.48 LRK55_RS17545 replication-associated recombination protein A low > 63
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_09050 recombinase XerC 0.55 AO353_27640 recombination factor protein RarA low > 101
Pseudomonas sp. RS175 0.38 PFR28_04378 Tyrosine recombinase XerC 0.56 PFR28_02606 Replication-associated recombination protein A low > 88
Rhodanobacter sp000427505 FW510-R12 0.37 LRK53_RS02315 tyrosine recombinase XerC 0.49 LRK53_RS11700 replication-associated recombination protein A low > 60
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC 0.49 OKGIIK_07580 rarA recombination factor protein RarA — —
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS08535 tyrosine recombinase XerC 0.49 LRK54_RS17320 replication-associated recombination protein A low > 59
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.48 ABZR86_RS01825 replication-associated recombination protein A 0.67 8
Dechlorosoma suillum PS 0.37 Dsui_0651 tyrosine recombinase XerC 0.48 Dsui_1694 AAA ATPase low > 51
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS01655 tyrosine recombinase XerC 0.49 BPHYT_RS05100 ATPase AAA — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS21475 recombinase XerC 0.47 HSERO_RS09515 ATPase AAA low > 78
Ralstonia solanacearum PSI07 0.35 RPSI07_RS23690 tyrosine recombinase XerC 0.49 RPSI07_RS13205 replication-associated recombination protein A low > 81
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS00355 tyrosine recombinase XerC 0.50 QEN71_RS03415 replication-associated recombination protein A — —
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_02202 integrase/recombinase XerC 0.48 H281DRAFT_00180 Recombination protein MgsA — —
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.55 PFLU_RS18520 replication-associated recombination protein A low > 109
Pseudomonas fluorescens SBW25 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.55 PFLU_RS18520 replication-associated recombination protein A low > 109
Pseudomonas simiae WCS417 0.34 PS417_27595 recombinase XerC 0.55 PS417_16480 recombination factor protein RarA low > 88
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS05065 tyrosine recombinase XerC 0.50 ABZR87_RS16030 replication-associated recombination protein A low > 80
Ralstonia solanacearum GMI1000 0.34 RS_RS00260 Tyrosine recombinase XerC 1 0.48 RS_RS11735 replication-associated recombination protein A low > 80
Castellaniella sp019104865 MT123 0.34 ABCV34_RS13455 tyrosine recombinase XerC 0.47 ABCV34_RS07220 replication-associated recombination protein A low > 48
Variovorax sp. SCN45 0.33 GFF4490 Site-specific tyrosine recombinase XerC 0.47 GFF6034 Replication-associated recombination protein RarA low > 127
Ralstonia solanacearum UW163 0.33 UW163_RS03905 tyrosine recombinase XerC 0.49 UW163_RS09525 replication-associated recombination protein A — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS09675 tyrosine recombinase XerC 0.49 RALBFv3_RS04145 replication-associated recombination protein A low > 76
Variovorax sp. OAS795 0.33 ABID97_RS06150 tyrosine recombinase XerC 0.48 ABID97_RS07835 replication-associated recombination protein A low > 91
Paraburkholderia graminis OAS925 0.33 ABIE53_000426 integrase/recombinase XerC 0.49 ABIE53_001292 putative ATPase — —
Acidovorax sp. GW101-3H11 0.31 Ac3H11_1995 Tyrosine recombinase XerC 0.47 Ac3H11_1696 FIG065221: Holliday junction DNA helicase low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF547 Tyrosine recombinase XerC 0.38 GFF777 FIG065221: Holliday junction DNA helicase low > 90
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS00615 recombinase XerC 0.49 RR42_RS04355 recombination factor protein RarA low > 128
Bacteroides ovatus ATCC 8483 0.29 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein 0.39 BACOVA_03971 ATPase, AAA family low > 94
Bacteroides thetaiotaomicron VPI-5482 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) 0.38 BT1205 putative ATPase, AAA family (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC 0.38 HMPREF1181_RS16975 replication-associated recombination protein A low > 56
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase 0.39 HMPREF1058_RS06440 replication-associated recombination protein A low > 67
Magnetospirillum magneticum AMB-1 0.25 AMB_RS21485 tyrosine recombinase XerC 0.39 AMB_RS17620 replication-associated recombination protein A — —
Rhizobium sp. OAE497 0.25 ABIE40_RS17950 tyrosine recombinase XerC 0.41 ABIE40_RS08045 replication-associated recombination protein A low > 107
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS03835 tyrosine-type recombinase/integrase 0.39 ABI39_RS20200 replication-associated recombination protein A — —
Agrobacterium fabrum C58 0.24 Atu2628 site-specific recombinase 0.41 Atu1914 ATPase, AAA family protein — —
Azospirillum brasilense Sp245 0.23 AZOBR_RS03965 tyrosine recombinase XerC 0.40 AZOBR_RS06885 ATPase AAA — —
Rhodopseudomonas palustris CGA009 0.22 TX73_000945 tyrosine recombinase XerC 0.40 TX73_016655 replication-associated recombination protein A low > 86
Bosea sp. OAE506 0.21 ABIE41_RS07870 tyrosine recombinase XerC 0.38 ABIE41_RS14690 replication-associated recombination protein A low > 77
Fusobacterium nucleatum SB010 0.16 HUW76_06795 tyrosine-type recombinase/integrase 0.30 HUW76_02735 replication-associated recombination protein A low > 35

Not shown: 1 genomes with orthologs for CSW01_00650 only; 20 genomes with orthologs for CSW01_05630 only