Conservation of cofitness between CSW01_06085 and CSW01_01830 in Vibrio cholerae E7946 ATCC 55056

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06085 urocanate hydratase 1.0 CSW01_01830 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.86 19
Alteromonas macleodii MIT1002 0.80 MIT1002_00904 Urocanate hydratase 0.57 MIT1002_03789 tRNA dimethylallyltransferase — —
Shewanella loihica PV-4 0.80 Shew_3757 urocanate hydratase (RefSeq) 0.63 Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.79 B158DRAFT_1433 urocanate hydratase (EC 4.2.1.49) 0.60 B158DRAFT_1951 tRNA dimethylallyltransferase low > 40
Shewanella sp. ANA-3 0.79 Shewana3_0100 urocanate hydratase (RefSeq) 0.63 Shewana3_0596 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Shewanella oneidensis MR-1 0.79 SO0097 hutU urocanate hydratase (NCBI ptt file) 0.65 SO0602 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) low > 76
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS23505 urocanate hydratase 0.49 QEN71_RS26440 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Pseudomonas aeruginosa PA14 0.76 IKLFDK_28020 urocanate hydratase 0.55 IKLFDK_28815 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 98
Pseudomonas aeruginosa MRSN321 0.76 DY961_RS11325 hutU;go_function=urocanate urocanate hydratase 0.55 DY961_RS10515 miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.14 78
Pseudomonas aeruginosa PUPa3 0.76 DQ20_RS50770 hutU;go_function=urocanate urocanate hydratase 0.55 DQ20_RS51540 miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 101
Acinetobacter baumannii LAC-4 0.76 RR41_RS00380 urocanate hydratase 0.41 RR41_RS07075 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 55
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_1587 Urocanate hydratase (EC 4.2.1.49) (from data) 0.62 Pf1N1B4_1413 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas sp. SVBP6 0.76 COO64_RS13410 hutU urocanate hydratase 0.60 COO64_RS17895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 93
Paraburkholderia graminis OAS925 0.76 ABIE53_001731 urocanate hydratase 0.49 ABIE53_000875 tRNA dimethylallyltransferase low > 113
Pseudomonas putida KT2440 0.76 PP_5033 Urocanate hydratase 0.58 PP_4895 tRNA dimethylallyltransferase low > 96
Pseudomonas sp. BP01 0.76 JOY50_RS09520 hutU urocanate hydratase 0.59 JOY50_RS17225 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Pseudomonas sp. DMC3 0.76 GFF4062 Urocanate hydratase 0.64 GFF3219 tRNA dimethylallyltransferase low > 89
Burkholderia phytofirmans PsJN 0.76 BPHYT_RS07565 urocanate hydratase 0.47 BPHYT_RS03645 tRNA dimethylallyltransferase low > 109
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_12250 Urocanate hydratase (EC 4.2.1.49) (from data) 0.62 AO353_13140 tRNA dimethylallyltransferase low > 101
Cupriavidus basilensis FW507-4G11 0.76 RR42_RS14645 urocanate hydratase 0.46 RR42_RS17210 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Serratia liquefaciens MT49 0.76 IAI46_03665 urocanate hydratase 0.70 IAI46_01620 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 87
Pseudomonas lactucae CFBP13502 0.76 GEMAOFIL_00568 Urocanate hydratase 0.60 GEMAOFIL_00735 tRNA dimethylallyltransferase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_4828 urocanate hydratase 0.62 Psyr_0571 tRNA isopentenyltransferase low > 86
Pseudomonas sp. S08-1 0.76 OH686_16745 urocanate hydratase 0.57 OH686_09475 tRNA dimethylallyltransferase low > 80
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_4828 urocanate hydratase 0.62 Psyr_0571 tRNA isopentenyltransferase low > 86
Paraburkholderia bryophila 376MFSha3.1 0.76 H281DRAFT_04871 urocanate hydratase 0.48 H281DRAFT_04711 tRNA dimethylallyltransferase — —
Pseudomonas orientalis W4I3 0.76 QF045_RS04785 urocanate hydratase 0.60 QF045_RS05545 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 93
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_09630 Urocanate hydratase (EC 4.2.1.49) (from data) 0.63 AO356_08660 tRNA dimethylallyltransferase low > 104
Pseudomonas simiae WCS417 0.75 PS417_01720 Urocanate hydratase (EC 4.2.1.49) (from data) 0.60 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase low > 88
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_3805 Urocanate hydratase (EC 4.2.1.49) (from data) 0.63 Pf6N2E2_3615 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Pseudomonas sp. RS175 0.75 PFR28_04965 Urocanate hydratase 0.62 PFR28_05120 tRNA dimethylallyltransferase low > 88
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_326 Urocanate hydratase (EC 4.2.1.49) (from data) 0.62 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 87
Sphingobium sp. HT1-2 0.75 GFF1214 Urocanate hydratase (EC 4.2.1.49) 0.27 GFF2053 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 95
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS01775 urocanate hydratase 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 109
Rhodospirillum rubrum S1H 0.75 Rru_A1304 Urocanate hydratase (NCBI) 0.21 Rru_A0466 tRNA isopentenyltransferase (NCBI) — —
Pseudomonas fluorescens SBW25 0.75 PFLU_RS01775 urocanate hydratase 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 109
Klebsiella pneumoniae MKP103 0.75 KDGMDA_17000 urocanate hydratase 0.73 KDGMDA_11030 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 95
Sphingomonas koreensis DSMZ 15582 0.75 Ga0059261_3961 Urocanate hydratase (EC 4.2.1.49) (from data) 0.28 Ga0059261_0069 tRNA dimethylallyltransferase low > 68
Pseudomonas segetis P6 0.75 ACVTMO_RS19645 hutU urocanate hydratase 0.58 ACVTMO_RS20605 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Enterobacter sp. TBS_079 0.75 MPMX20_01399 Urocanate hydratase 0.71 MPMX20_00452 tRNA dimethylallyltransferase low > 85
Klebsiella michiganensis M5al 0.74 BWI76_RS08735 Urocanate hydratase (EC 4.2.1.49) (from data) 0.73 BWI76_RS02530 tRNA dimethylallyltransferase low > 92
Enterobacter asburiae PDN3 0.74 EX28DRAFT_2220 urocanate hydratase (EC 4.2.1.49) 0.71 EX28DRAFT_3368 tRNA dimethylallyltransferase low > 76
Dyella japonica UNC79MFTsu3.2 0.74 ABZR86_RS07755 urocanate hydratase 0.52 ABZR86_RS08370 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Rhodanobacter sp. FW510-T8 0.73 OKGIIK_08350 hutU urocanate hydratase 0.50 OKGIIK_06625 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Caulobacter crescentus NA1000 0.73 CCNA_01008 urocanate hydratase 0.26 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Caulobacter crescentus NA1000 Δfur 0.73 CCNA_01008 urocanate hydratase 0.26 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Azospirillum brasilense Sp245 0.73 AZOBR_RS21740 urocanate hydratase 0.26 AZOBR_RS06550 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Rhodanobacter denitrificans FW104-10B01 0.73 LRK54_RS16320 urocanate hydratase 0.50 LRK54_RS00635 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 59
Rhodanobacter denitrificans MT42 0.73 LRK55_RS16070 urocanate hydratase 0.50 LRK55_RS00405 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Rhodanobacter sp000427505 FW510-R12 0.72 LRK53_RS12480 urocanate hydratase 0.51 LRK53_RS09520 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 59
Sinorhizobium meliloti 1021 0.72 SM_b21163 Urocanate hydratase (EC 4.2.1.49) (from data) 0.31 SMc01435 tRNA delta(2)-isopentenylpyrophosphate transferase — —
Dickeya dadantii 3937 0.72 DDA3937_RS14990 urocanate hydratase 0.70 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Bosea sp. OAE506 0.72 ABIE41_RS23655 urocanate hydratase 0.24 ABIE41_RS12880 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 77
Agrobacterium fabrum C58 0.72 Atu3931 urocanate hydratase 0.30 Atu2039 tRNA delta(2)-isopentenylpyrophosphate — —
Rhizobium sp. OAE497 0.72 ABIE40_RS20360 urocanate hydratase 0.29 ABIE40_RS11505 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Phaeobacter inhibens DSM 17395 0.72 PGA1_c36320 Urocanate hydratase (EC 4.2.1.49) (from data) 0.20 PGA1_c14200 tRNA delta(2)-isopentenylpyrophosphate transferase MiaA — —
Azospirillum sp. SherDot2 0.72 MPMX19_04936 Urocanate hydratase 0.27 MPMX19_01778 tRNA dimethylallyltransferase — —
Lysobacter sp. OAE881 0.72 ABIE51_RS06295 urocanate hydratase 0.47 ABIE51_RS06535 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 62
Erwinia amylovora T8 0.72 OLJFJH_16545 urocanate hydratase 0.68 OLJFJH_02505 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 58
Pantoea agglomerans CFBP13505 P0401 0.71 PagCFBP13505_RS04040 urocanate hydratase 0.70 PagCFBP13505_RS11180 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 74
Variovorax sp. SCN45 0.71 GFF6408 Urocanate hydratase (EC 4.2.1.49) 0.47 GFF4798 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Rahnella sp. WP5 0.71 EX31_RS06760 urocanate hydratase 0.70 EX31_RS08825 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 89
Pantoea sp. MT58 0.71 IAI47_13280 urocanate hydratase 0.70 IAI47_02585 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 76
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.3298.1 Urocanate hydratase (EC 4.2.1.49) 0.49 Xcc-8004.3121.1 tRNA dimethylallyltransferase (EC 2.5.1.75) — —
Dickeya dianthicola 67-19 0.71 HGI48_RS15085 urocanate hydratase 0.69 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 71
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS01030 urocanate hydratase 0.49 ABZR87_RS00875 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 80
Variovorax sp. OAS795 0.70 ABID97_RS03425 urocanate hydratase 0.45 ABID97_RS20320 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Escherichia coli ECOR38 0.70 HEPCGN_01335 hutU urocanate hydratase 0.72 HEPCGN_10490 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 88
Dickeya dianthicola ME23 0.70 DZA65_RS15830 urocanate hydratase 0.69 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 75
Ralstonia solanacearum PSI07 0.69 RPSI07_RS11910 urocanate hydratase 0.48 RPSI07_RS12065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.69 GFF3590 Urocanate hydratase (EC 4.2.1.49) 0.46 GFF5491 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 90
Acidovorax sp. GW101-3H11 0.69 Ac3H11_2557 Urocanate hydratase (EC 4.2.1.49) (from data) 0.47 Ac3H11_319 tRNA dimethylallyltransferase (EC 2.5.1.75) low > 79
Ralstonia solanacearum UW163 0.68 UW163_RS08230 urocanate hydratase 0.48 UW163_RS08390 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS05395 urocanate hydratase 0.48 RALBFv3_RS05235 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 76
Ralstonia solanacearum GMI1000 0.68 RS_RS13255 urocanate hydratase 0.48 RS_RS12855 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 80
Castellaniella sp019104865 MT123 0.68 ABCV34_RS12785 urocanate hydratase 0.50 ABCV34_RS08790 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.58 CA264_08875 urocanate hydratase 0.30 CA264_12070 tRNA dimethylallyltransferase 0.39 60
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS00360 urocanate hydratase 0.26 HMPREF1181_RS06385 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS22275 urocanate hydratase 0.31 CA265_RS02960 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 88
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS02520 urocanate hydratase 0.26 HMPREF1058_RS08065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 67
Cellulophaga baltica 18 0.27 M666_RS07215 urocanate hydratase 0.29 M666_RS17610 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 67
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS01810 urocanate hydratase 0.26 ABI39_RS00520 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 72
Bacteroides thetaiotaomicron VPI-5482 0.26 BT2694 putative urocanate hydratase (NCBI ptt file) 0.27 BT4203 tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.26 Sama_1632 Urocanate hydratase (EC 4.2.1.49) (from data) 0.62 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) — —
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS11595 urocanate hydratase 0.26 HMPREF1078_RS13930 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA low > 61

Not shown: 1 genomes with orthologs for CSW01_06085 only; 36 genomes with orthologs for CSW01_01830 only