Conservation of cofitness between CSW01_01015 and CSW01_00650 in Vibrio cholerae E7946 ATCC 55056

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01015 DNA helicase II 1.0 CSW01_00650 tyrosine recombinase XerC 0.78 9
Escherichia coli ECOR27 0.71 NOLOHH_06540 uvrD DNA helicase II 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC low > 76
Escherichia coli ECRC62 0.71 BNILDI_04995 uvrD DNA helicase II 0.54 BNILDI_04985 xerC tyrosine recombinase XerC low > 75
Escherichia coli BW25113 0.71 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) low > 76
Escherichia coli ECRC98 0.71 JDDGAC_18035 uvrD DNA helicase II 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS21885 DNA helicase II 0.54 ECOLIN_RS21875 tyrosine recombinase XerC 0.70 6
Escherichia fergusonii Becca 0.71 EFB2_04824 DNA helicase II 0.54 EFB2_04826 Tyrosine recombinase XerC low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_04237 DNA helicase II 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC low > 74
Escherichia coli BL21 0.71 ECD_03689 DNA-dependent ATPase I and helicase II 0.55 ECD_03687 site-specific tyrosine recombinase — —
Escherichia coli ECRC100 0.71 OKFHMN_14410 uvrD DNA helicase II 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC low > 79
Escherichia coli ECRC102 0.71 NIAGMN_12165 uvrD DNA helicase II 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC99 0.71 KEDOAH_13740 uvrD DNA helicase II 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.71 MCAODC_04915 uvrD DNA helicase II 0.55 MCAODC_04925 xerC tyrosine recombinase XerC — —
Klebsiella michiganensis M5al 0.71 BWI76_RS01220 DNA-dependent helicase II 0.55 BWI76_RS01210 tyrosine recombinase XerC low > 92
Serratia liquefaciens MT49 0.71 IAI46_00735 DNA helicase II 0.55 IAI46_00725 tyrosine recombinase XerC 0.48 19
Escherichia coli ECOR38 0.71 HEPCGN_13115 uvrD DNA helicase II 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC 0.78 9
Klebsiella pneumoniae MKP103 0.71 KDGMDA_09710 DNA helicase II 0.53 KDGMDA_09700 tyrosine recombinase XerC low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.55 GFF239 Tyrosine recombinase XerC — —
Enterobacter sp. TBS_079 0.70 MPMX20_04463 DNA helicase II 0.52 MPMX20_04465 Tyrosine recombinase XerC 0.44 10
Enterobacter asburiae PDN3 0.70 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) 0.54 EX28DRAFT_4480 tyrosine recombinase XerC — —
Dickeya dadantii 3937 0.70 DDA3937_RS19880 DNA helicase II 0.56 DDA3937_RS19890 tyrosine recombinase XerC — —
Dickeya dianthicola 67-19 0.70 HGI48_RS20035 DNA helicase II 0.56 HGI48_RS20045 tyrosine recombinase XerC 0.50 18
Dickeya dianthicola ME23 0.70 DZA65_RS21080 DNA helicase II 0.56 DZA65_RS21090 tyrosine recombinase XerC low > 75
Pectobacterium carotovorum WPP14 0.70 HER17_RS01360 DNA helicase II 0.54 HER17_RS01350 tyrosine recombinase XerC low > 75
Pantoea sp. MT58 0.69 IAI47_18390 DNA helicase II 0.53 IAI47_18400 tyrosine recombinase XerC 0.39 33
Erwinia tracheiphila SCR3 0.68 LU632_RS24125 uvrD DNA helicase II 0.53 LU632_RS24135 xerC tyrosine recombinase XerC — —
Pantoea agglomerans CFBP13505 P0401 0.68 PagCFBP13505_RS15370 DNA helicase II 0.53 PagCFBP13505_RS15380 tyrosine recombinase XerC — —
Erwinia tracheiphila HP pepo 2.2 0.68 IJEDHG_08770 uvrD DNA helicase II 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC — —
Rahnella sp. WP5 0.68 EX31_RS15175 DNA helicase II 0.56 EX31_RS15165 tyrosine recombinase XerC 0.62 2
Erwinia amylovora T8 0.68 OLJFJH_06425 DNA helicase II 0.54 OLJFJH_06415 tyrosine recombinase XerC low > 58
Shewanella sp. ANA-3 0.67 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Shewanella oneidensis MR-1 0.67 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.66 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) low > 62
Shewanella loihica PV-4 0.66 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.65 MIT1002_00153 DNA helicase II 0.45 MIT1002_00157 Tyrosine recombinase XerC low > 70
Pseudomonas aeruginosa PUPa3 0.60 DQ20_RS57955 uvrD;go_function=DNA DNA helicase II 0.40 DQ20_RS49840 xerC;go_function=site-specific tyrosine recombinase XerC 0.47 11
Pseudomonas aeruginosa MRSN321 0.60 DY961_RS25505 uvrD;go_function=DNA DNA helicase II 0.40 DY961_RS12285 xerC;go_function=site-specific tyrosine recombinase XerC 0.45 60
Pseudomonas aeruginosa PA14 0.60 IKLFDK_26200 DNA helicase II 0.40 IKLFDK_27050 tyrosine recombinase XerC 0.50 4
Pseudomonas putida KT2440 0.60 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.39 PP_5230 Tyrosine recombinase XerC 0.45 8
Pseudomonas sp. BP01 0.60 JOY50_RS08735 uvrD DNA helicase II 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC low > 84
Pseudomonas sp. SVBP6 0.60 COO64_RS01845 uvrD DNA helicase II 0.39 COO64_RS01270 xerC tyrosine recombinase XerC low > 93
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS29900 DNA helicase II 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.31 68
Pseudomonas fluorescens SBW25 0.59 PFLU_RS29900 DNA helicase II 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas orientalis W4I3 0.59 QF045_RS02600 DNA helicase II 0.37 QF045_RS01960 tyrosine recombinase XerC low > 93
Pseudomonas lactucae CFBP13502 0.59 GEMAOFIL_00116 DNA helicase II 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC low > 96
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_10055 DNA helicase II 0.38 AO353_09050 recombinase XerC 0.47 15
Pseudomonas sp. DMC3 0.59 GFF512 DNA helicase II 0.38 GFF370 Tyrosine recombinase XerC low > 89
Pseudomonas sp. S08-1 0.59 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA 0.38 OH686_13785 tyrosine recombinase XerC low > 80
Pseudomonas stutzeri RCH2 0.59 Psest_4098 Superfamily I DNA and RNA helicases 0.40 Psest_3767 tyrosine recombinase XerC low > 67
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.38 PfGW456L13_842 Tyrosine recombinase XerC 0.40 23
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC 0.43 14
Pseudomonas sp. RS175 0.59 PFR28_04523 DNA helicase II 0.38 PFR28_04378 Tyrosine recombinase XerC low > 88
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_11990 DNA helicase II 0.38 AO356_12725 recombinase XerC 0.32 72
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit low > 40
Pseudomonas segetis P6 0.58 ACVTMO_RS00885 uvrD DNA helicase II 0.40 ACVTMO_RS22525 xerC tyrosine recombinase XerC — —
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Marinobacter adhaerens HP15 0.56 HP15_3403 UvrD/REP helicase 0.44 HP15_250 site-specific tyrosine recombinase XerC low > 73
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_16775 DNA helicase 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC low > 53
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS16965 DNA helicase II 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.73 22
Lysobacter sp. OAE881 0.55 ABIE51_RS01985 DNA helicase II 0.38 ABIE51_RS03035 tyrosine recombinase XerC 0.83 7
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Rhodanobacter denitrificans MT42 0.54 LRK55_RS06595 DNA helicase II 0.38 LRK55_RS08300 tyrosine recombinase XerC — —
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS06850 DNA helicase II 0.37 LRK54_RS08535 tyrosine recombinase XerC low > 59
Rhodanobacter sp000427505 FW510-R12 0.53 LRK53_RS01560 UvrD-helicase domain-containing protein 0.37 LRK53_RS02315 tyrosine recombinase XerC — —
Methylophilus sp. DMC18 0.48 GFF1664 DNA helicase II 0.40 GFF1535 Tyrosine recombinase XerC low > 43
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS13840 DNA-dependent helicase 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Dechlorosoma suillum PS 0.45 Dsui_1227 DNA/RNA helicase, superfamily I 0.37 Dsui_0651 tyrosine recombinase XerC low > 51
Paraburkholderia graminis OAS925 0.45 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA 0.33 ABIE53_000426 integrase/recombinase XerC — —
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD 0.34 H281DRAFT_02202 integrase/recombinase XerC — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS05110 3'-5' exonuclease 0.35 QEN71_RS00355 tyrosine recombinase XerC — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA 0.31 Ac3H11_1995 Tyrosine recombinase XerC low > 79
Variovorax sp. OAS795 0.44 ABID97_RS09150 UvrD-helicase domain-containing protein 0.33 ABID97_RS06150 tyrosine recombinase XerC low > 91
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS15090 DNA helicase 0.31 RR42_RS00615 recombinase XerC low > 128
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS02160 DNA-dependent helicase 0.35 HSERO_RS21475 recombinase XerC low > 78
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS15705 UvrD-helicase domain-containing protein 0.34 ABZR87_RS05065 tyrosine recombinase XerC low > 80
Variovorax sp. SCN45 0.43 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) 0.33 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF5598 ATP-dependent DNA helicase UvrD/PcrA 0.31 GFF547 Tyrosine recombinase XerC — —
Ralstonia solanacearum GMI1000 0.42 RS_RS11220 DNA-dependent helicase 0.34 RS_RS00260 Tyrosine recombinase XerC 1 low > 80
Ralstonia solanacearum UW163 0.42 UW163_RS09895 DNA-dependent helicase 0.33 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS03775 DNA-dependent helicase 0.33 RALBFv3_RS09675 tyrosine recombinase XerC — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS13455 DNA-dependent helicase 0.35 RPSI07_RS23690 tyrosine recombinase XerC — —
Castellaniella sp019104865 MT123 0.42 ABCV34_RS05210 UvrD-helicase domain-containing protein 0.34 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Azospirillum brasilense Sp245 0.35 AZOBR_RS12445 DNA helicase II 0.23 AZOBR_RS03965 tyrosine recombinase XerC — —
Bosea sp. OAE506 0.35 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.21 ABIE41_RS07870 tyrosine recombinase XerC 0.34 21
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases 0.22 Ga0059261_2764 Site-specific recombinase XerD low > 68
Magnetospirillum magneticum AMB-1 0.34 AMB_RS03725 DNA helicase II 0.25 AMB_RS21485 tyrosine recombinase XerC — —
Rhizobium sp. OAE497 0.33 ABIE40_RS11670 UvrD-helicase domain-containing protein 0.25 ABIE40_RS17950 tyrosine recombinase XerC low > 107
Bacteroides thetaiotaomicron VPI-5482 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file) 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.31 BACOVA_02365 UvrD/REP helicase 0.29 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein low > 96
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS17735 UvrD-helicase domain-containing protein 0.25 ABI39_RS03835 tyrosine-type recombinase/integrase — —
Phocaeicola vulgatus CL09T03C04 0.30 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase low > 67
Fusobacterium nucleatum SB010 0.29 HUW76_07175 UvrD-helicase domain-containing protein 0.16 HUW76_06795 tyrosine-type recombinase/integrase low > 35
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS16505 UvrD-helicase domain-containing protein 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC low > 56

Not shown: 18 genomes with orthologs for CSW01_01015 only; 3 genomes with orthologs for CSW01_00650 only