| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS16975 | | shikimate 5-dehydrogenase | 1.0 | BPHYT_RS33915 | | isopropylmalate isomerase | 0.73 | 16 |
| Paraburkholderia graminis OAS925 | 0.93 | ABIE53_003560 | | shikimate dehydrogenase | 0.96 | ABIE53_004801 | | 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.90 | H281DRAFT_06291 | | shikimate dehydrogenase (EC 1.1.1.25) | 0.97 | H281DRAFT_06075 | | 3-isopropylmalate dehydratase, large subunit | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.81 | QEN71_RS27130 | | shikimate dehydrogenase | 0.95 | QEN71_RS17605 | | 3-isopropylmalate dehydratase large subunit | 0.60 | 76 |
| Ralstonia solanacearum PSI07 | 0.55 | RPSI07_RS11300 | | shikimate dehydrogenase | 0.87 | RPSI07_RS14695 | | 3-isopropylmalate dehydratase large subunit | 0.74 | 17 |
| Ralstonia solanacearum UW163 | 0.54 | UW163_RS07680 | | shikimate dehydrogenase | 0.87 | UW163_RS11105 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.54 | RALBFv3_RS05945 | | shikimate dehydrogenase | 0.87 | RALBFv3_RS02620 | | 3-isopropylmalate dehydratase large subunit | 0.44 | 39 |
| Ralstonia solanacearum GMI1000 | 0.54 | RS_RS13890 | | shikimate dehydrogenase | 0.87 | RS_RS10000 | | 3-isopropylmalate dehydratase large subunit | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.54 | ABZR87_RS01605 | | shikimate dehydrogenase | 0.87 | ABZR87_RS14540 | | 3-isopropylmalate dehydratase large subunit | 0.65 | 10 |
| Herbaspirillum seropedicae SmR1 | 0.51 | HSERO_RS01990 | | shikimate 5-dehydrogenase | 0.80 | HSERO_RS16515 | | isopropylmalate isomerase | 0.76 | 10 |
| Cupriavidus basilensis FW507-4G11 | 0.51 | RR42_RS17645 | | shikimate dehydrogenase | 0.86 | RR42_RS14400 | | isopropylmalate isomerase | 0.75 | 24 |
| Pseudomonas sp. S08-1 | 0.47 | OH686_12485 | | Shikimate 5-dehydrogenase I alpha | 0.71 | OH686_04480 | | 3-isopropylmalate dehydratase large subunit | low | > 80 |
| Pseudomonas putida KT2440 | 0.47 | PP_0074 | | shikimate 5-dehydrogenase | 0.72 | PP_1985 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_0043 | aroE | shikimate 5-dehydrogenase (RefSeq) | 0.59 | Shewana3_3759 | | isopropylmalate isomerase large subunit (RefSeq) | 0.91 | 25 |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_0025 | | shikimate dehydrogenase | 0.72 | Psyr_1983 | | 3-isopropylmalate dehydratase, large subunit | 0.66 | 13 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_0025 | | shikimate dehydrogenase | 0.72 | Psyr_1983 | | 3-isopropylmalate dehydratase, large subunit | 0.64 | 16 |
| Pseudomonas sp. RS175 | 0.46 | PFR28_04655 | | Shikimate dehydrogenase (NADP(+)) | 0.73 | PFR28_02824 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.45 | AO356_11315 | | shikimate dehydrogenase | 0.73 | AO356_21400 | | isopropylmalate isomerase | 0.46 | 54 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_00125 | | shikimate dehydrogenase | 0.72 | PS417_18600 | | isopropylmalate isomerase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS00120 | | shikimate dehydrogenase | 0.71 | PFLU_RS20580 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.45 | Pf6N2E2_4130 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.72 | Pf6N2E2_63 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | — | — |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS00120 | | shikimate dehydrogenase | 0.71 | PFLU_RS20580 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.45 | Pf1N1B4_1906 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.72 | Pf1N1B4_15 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.53 | 31 |
| Vibrio cholerae E7946 ATCC 55056 | 0.45 | CSW01_00280 | | shikimate dehydrogenase | 0.59 | CSW01_12605 | | 3-isopropylmalate dehydratase large subunit | low | > 62 |
| Marinobacter adhaerens HP15 | 0.45 | HP15_3750 | | shikimate dehydrogenase | 0.73 | HP15_1834 | | protein containing 3-isopropylmalate dehydratase, large subunit region domain | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.45 | PfGW456L13_644 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.72 | PfGW456L13_3948 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.78 | 22 |
| Castellaniella sp019104865 MT123 | 0.44 | ABCV34_RS11630 | | shikimate dehydrogenase | 0.77 | ABCV34_RS04290 | | 3-isopropylmalate dehydratase large subunit | low | > 48 |
| Pseudomonas stutzeri RCH2 | 0.44 | Psest_0029 | | shikimate 5-dehydrogenase | 0.72 | Psest_2591 | | 3-isopropylmalate dehydratase, large subunit | — | — |
| Shewanella oneidensis MR-1 | 0.44 | SO0040 | aroE | shikimate 5-dehydrogenase (NCBI ptt file) | 0.59 | SO4234 | leuC | 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) | 0.88 | 18 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_10670 | | shikimate dehydrogenase | 0.72 | AO353_20620 | | isopropylmalate isomerase | 0.74 | 19 |
| Shewanella amazonensis SB2B | 0.41 | Sama_0052 | | shikimate dehydrogenase (RefSeq) | 0.58 | Sama_0337 | | isopropylmalate isomerase large subunit (RefSeq) | 0.68 | 59 |
| Pantoea sp. MT58 | 0.40 | IAI47_02315 | | shikimate dehydrogenase | 0.62 | IAI47_16010 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Shewanella loihica PV-4 | 0.40 | Shew_3727 | | shikimate 5-dehydrogenase (RefSeq) | 0.59 | Shew_3470 | | isopropylmalate isomerase large subunit (RefSeq) | 0.80 | 31 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.39 | OHPLBJKB_00422 | | Shikimate dehydrogenase (NADP(+)) | 0.62 | OHPLBJKB_03585 | | 3-isopropylmalate dehydratase large subunit | low | > 73 |
| Escherichia coli BW25113 | 0.39 | b3281 | aroE | dehydroshikimate reductase, NAD(P)-binding (NCBI) | 0.62 | b0072 | leuC | isopropylmalate isomerase large subunit (NCBI) | 0.93 | 12 |
| Escherichia coli BL21 | 0.39 | ECD_03132 | | dehydroshikimate reductase, NAD(P)-binding | 0.62 | ECD_00074 | | 3-isopropylmalate dehydratase large subunit | 0.56 | 45 |
| Escherichia coli ECRC62 | 0.39 | BNILDI_02165 | aroE | shikimate dehydrogenase | 0.62 | BNILDI_08540 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.93 | 13 |
| Escherichia coli ECOR27 | 0.39 | NOLOHH_09355 | aroE | shikimate dehydrogenase | 0.62 | NOLOHH_03070 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.85 | 43 |
| Escherichia coli ECOR38 | 0.39 | HEPCGN_16385 | aroE | shikimate dehydrogenase | 0.62 | HEPCGN_08705 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.82 | 27 |
| Escherichia coli ECRC100 | 0.38 | OKFHMN_17565 | aroE | shikimate dehydrogenase | 0.61 | OKFHMN_10725 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.94 | 41 |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_10585 | aroE | shikimate dehydrogenase | 0.61 | KEDOAH_17430 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | — | — |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_15325 | aroE | shikimate dehydrogenase | 0.61 | NIAGMN_08575 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | — | — |
| Escherichia coli ECRC101 | 0.38 | MCAODC_08085 | aroE | shikimate dehydrogenase | 0.61 | MCAODC_01240 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.82 | 32 |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_21185 | aroE | shikimate dehydrogenase | 0.61 | JDDGAC_14320 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.74 | 76 |
| Acidovorax sp. GW101-3H11 | 0.38 | Ac3H11_4044 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.74 | Ac3H11_1525 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.90 | 18 |
| Escherichia coli Nissle 1917 | 0.38 | ECOLIN_RS18840 | | shikimate dehydrogenase | 0.62 | ECOLIN_RS00390 | | 3-isopropylmalate dehydratase large subunit | 0.75 | 27 |
| Escherichia fergusonii Becca | 0.38 | EFB2_00542 | | Shikimate dehydrogenase (NADP(+)) | 0.62 | EFB2_03973 | | 3-isopropylmalate dehydratase large subunit | low | > 86 |
| Enterobacter asburiae PDN3 | 0.37 | EX28DRAFT_0046 | | shikimate dehydrogenase | 0.62 | EX28DRAFT_3668 | | 3-isopropylmalate dehydratase, large subunit | low | > 76 |
| Serratia liquefaciens MT49 | 0.37 | IAI46_23240 | | shikimate dehydrogenase | 0.59 | IAI46_03345 | | 3-isopropylmalate dehydratase large subunit | 0.69 | 11 |
| Erwinia tracheiphila SCR3 | 0.37 | LU632_RS22445 | aroE | shikimate dehydrogenase | 0.58 | LU632_RS02870 | leuC | 3-isopropylmalate dehydratase large subunit | 0.50 | 52 |
| Klebsiella michiganensis M5al | 0.36 | BWI76_RS25645 | | shikimate dehydrogenase | 0.61 | BWI76_RS04670 | | 3-isopropylmalate dehydratase large subunit | 0.77 | 26 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.36 | GFF2397 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.62 | GFF166 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.36 | MPMX20_04189 | | Shikimate dehydrogenase (NADP(+)) | 0.61 | MPMX20_00767 | | 3-isopropylmalate dehydratase large subunit 1 | 0.84 | 44 |
| Variovorax sp. SCN45 | 0.35 | GFF4456 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.75 | GFF3890 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | low | > 127 |
| Acinetobacter radioresistens SK82 | 0.35 | MPMX26_02748 | | Shikimate dehydrogenase (NADP(+)) | 0.68 | MPMX26_00345 | | 3-isopropylmalate dehydratase large subunit | low | > 36 |
| Dickeya dianthicola ME23 | 0.35 | DZA65_RS20315 | | shikimate dehydrogenase | 0.62 | DZA65_RS19210 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Dickeya dadantii 3937 | 0.35 | DDA3937_RS19100 | | shikimate dehydrogenase | 0.61 | DDA3937_RS18125 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Alteromonas macleodii MIT1002 | 0.35 | MIT1002_00029 | | Shikimate dehydrogenase | 0.57 | MIT1002_00947 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Dickeya dianthicola 67-19 | 0.35 | HGI48_RS19190 | | shikimate dehydrogenase | 0.62 | HGI48_RS18065 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS06300 | | shikimate dehydrogenase | 0.75 | ABID97_RS08465 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Pectobacterium carotovorum WPP14 | 0.33 | HER17_RS02250 | | shikimate dehydrogenase | 0.61 | HER17_RS03075 | | 3-isopropylmalate dehydratase large subunit | 0.94 | 17 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.30 | Xcc-8004.5020.1 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.72 | Xcc-8004.1049.1 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.89 | 8 |
| Lysobacter sp. OAE881 | 0.29 | ABIE51_RS01815 | | shikimate dehydrogenase | 0.48 | ABIE51_RS17575 | | 3-isopropylmalate dehydratase large subunit | 0.72 | 14 |
| Kangiella aquimarina DSM 16071 | 0.28 | B158DRAFT_0259 | | shikimate 5-dehydrogenase | 0.73 | B158DRAFT_1319 | | 3-isopropylmalate dehydratase, large subunit | low | > 40 |
| Rhodopseudomonas palustris CGA009 | 0.21 | TX73_022410 | | shikimate dehydrogenase | 0.64 | TX73_001245 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Sinorhizobium meliloti 1021 | 0.20 | SMc02791 | | shikimate 5-dehydrogenase | 0.66 | SMc03823 | | isopropylmalate isomerase large subunit | — | — |
| Synechococcus elongatus PCC 7942 | 0.20 | Synpcc7942_2467 | aroE | shikimate 5-dehydrogenase | 0.47 | Synpcc7942_1898 | leuC | isopropylmalate isomerase large subunit | — | — |
| Phaeobacter inhibens DSM 17395 | 0.19 | PGA1_c35150 | | shikimate dehydrogenase AroE | 0.59 | PGA1_c29780 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Rhodospirillum rubrum S1H | 0.19 | Rru_A3613 | | Quinate/Shikimate 5-dehydrogenase (NCBI) | 0.69 | Rru_A1189 | | 3-isopropylmalate dehydratase large subunit region (NCBI) | — | — |
| Azospirillum sp. SherDot2 | 0.19 | MPMX19_02560 | | Shikimate dehydrogenase (NADP(+)) | 0.68 | MPMX19_01998 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Rhizobium sp. OAE497 | 0.19 | ABIE40_RS19250 | | shikimate dehydrogenase | 0.65 | ABIE40_RS18380 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Bosea sp. OAE506 | 0.18 | ABIE41_RS04650 | | shikimate dehydrogenase | 0.66 | ABIE41_RS11660 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Azospirillum brasilense Sp245 | 0.18 | AZOBR_RS01765 | | shikimate 5-dehydrogenase | 0.68 | AZOBR_RS03545 | | isopropylmalate isomerase | — | — |
| Caulobacter crescentus NA1000 | 0.17 | CCNA_00003 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.62 | CCNA_00196 | | 3-isopropylmalate dehydratase large subunit | 0.92 | 12 |
| Caulobacter crescentus NA1000 Δfur | 0.17 | CCNA_00003 | | shikimate 5-dehydrogenase | 0.62 | CCNA_00196 | | 3-isopropylmalate dehydratase large subunit | low | > 67 |
| Parabacteroides merdae CL09T00C40 | 0.15 | HMPREF1078_RS14200 | | shikimate dehydrogenase | 0.49 | HMPREF1078_RS16660 | | 3-isopropylmalate dehydratase large subunit | 0.94 | 1 |
| Bacteroides stercoris CC31F | 0.15 | HMPREF1181_RS06320 | | shikimate dehydrogenase | 0.50 | HMPREF1181_RS14145 | | 3-isopropylmalate dehydratase large subunit | 0.82 | 22 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.15 | ABZR88_RS20055 | | shikimate dehydrogenase | 0.52 | ABZR88_RS11595 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.14 | HMPREF1058_RS16750 | | shikimate dehydrogenase | 0.49 | HMPREF1058_RS14550 | | 3-isopropylmalate dehydratase large subunit | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.14 | ABI39_RS12665 | | shikimate dehydrogenase | 0.50 | ABI39_RS10200 | | 3-isopropylmalate dehydratase large subunit | 0.80 | 25 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.14 | Echvi_1145 | | Shikimate 5-dehydrogenase | 0.49 | Echvi_2059 | | 3-isopropylmalate dehydratase, large subunit | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.14 | CA264_19075 | | shikimate dehydrogenase | 0.51 | CA264_09435 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Magnetospirillum magneticum AMB-1 | 0.14 | AMB_RS23010 | | shikimate dehydrogenase | 0.64 | AMB_RS20560 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.13 | CA265_RS19745 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.51 | CA265_RS15830 | | 3-isopropylmalate dehydratase large subunit | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.13 | BT4215 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.50 | BT1860 | | 3-isopropylmalate dehydratase large subunit (NCBI ptt file) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.13 | BACOVA_05065 | | putative shikimate dehydrogenase | 0.50 | BACOVA_04603 | | 3-isopropylmalate dehydratase, large subunit | — | — |
| Mycobacterium tuberculosis H37Rv | 0.11 | Rv2552c | | Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) | 0.57 | Rv2988c | | Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) | — | — |
Not shown: 4 genomes with orthologs for BPHYT_RS16975 only; 12 genomes with orthologs for BPHYT_RS33915 only