Conservation of cofitness between BPHYT_RS33900 and BPHYT_RS14895 in Burkholderia phytofirmans PsJN

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS33900 3-isopropylmalate dehydrogenase 1.0 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase 0.92 15
Paraburkholderia graminis OAS925 0.98 ABIE53_004804 3-isopropylmalate dehydrogenase 0.91 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.98 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.95 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia sabiae LMG 24235 0.96 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.90 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.71 42
Ralstonia sp. UNC404CL21Col 0.89 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.70 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase 0.93 2
Cupriavidus basilensis FW507-4G11 0.89 RR42_RS14385 3-isopropylmalate dehydrogenase 0.67 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase 0.82 8
Ralstonia solanacearum PSI07 0.89 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.69 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum GMI1000 0.89 RS_RS09990 3-isopropylmalate dehydrogenase 0.69 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Ralstonia solanacearum UW163 0.89 UW163_RS11115 3-isopropylmalate dehydrogenase 0.69 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum IBSBF1503 0.89 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.69 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase low > 76
Herbaspirillum seropedicae SmR1 0.86 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.62 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas simiae WCS417 0.64 PS417_18585 3-isopropylmalate dehydrogenase 0.21 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase 0.82 26
Pseudomonas fluorescens SBW25 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.21 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 40
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.14 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.15 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.84 24
Desulfovibrio vulgaris Miyazaki F 0.57 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.31 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Synechococcus elongatus PCC 7942 0.56 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase 0.15 Synpcc7942_0232 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) 0.27 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) — —
Phaeobacter inhibens DSM 17395 0.54 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.13 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA — —
Dinoroseobacter shibae DFL-12 0.52 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) 0.14 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.52 AMB_RS20570 3-isopropylmalate dehydrogenase 0.15 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhizobium sp. OAE497 0.52 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.24 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Serratia liquefaciens MT49 0.51 IAI46_03350 3-isopropylmalate dehydrogenase 0.54 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase 0.67 21
Azospirillum sp. SherDot2 0.51 MPMX19_00607 3-isopropylmalate dehydrogenase 0.13 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bosea sp. OAE506 0.51 ABIE41_RS11860 3-isopropylmalate dehydrogenase 0.14 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodospirillum rubrum S1H 0.51 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.12 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Alteromonas macleodii MIT1002 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase 0.53 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sinorhizobium meliloti 1021 0.50 SMc04405 3-isopropylmalate dehydrogenase 0.17 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Klebsiella michiganensis M5al 0.50 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.54 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase 0.78 51
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.55 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 78
Rahnella sp. WP5 0.50 EX31_RS03685 3-isopropylmalate dehydrogenase 0.56 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola ME23 0.50 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.54 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pectobacterium carotovorum WPP14 0.49 HER17_RS03080 3-isopropylmalate dehydrogenase 0.52 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase 0.96 27
Dickeya dadantii 3937 0.49 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.55 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola 67-19 0.49 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.54 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Agrobacterium fabrum C58 0.49 Atu2791 3-isopropylmalate dehydrogenase 0.22 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase — —
Enterobacter sp. TBS_079 0.49 MPMX20_00768 3-isopropylmalate dehydrogenase 0.55 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase 0.83 39
Enterobacter asburiae PDN3 0.49 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.54 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) 0.61 63
Escherichia fergusonii Becca 0.49 EFB2_03972 3-isopropylmalate dehydrogenase 0.55 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli Nissle 1917 0.49 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.55 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase 0.79 33
Azospirillum brasilense Sp245 0.49 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.14 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECOR38 0.49 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.54 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.94 39
Escherichia coli ECRC98 0.49 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.54 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.95 18
Escherichia coli ECRC100 0.49 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.54 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.98 25
Escherichia coli ECRC99 0.49 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase 0.54 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC102 0.49 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase 0.54 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC101 0.49 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.54 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.90 38
Escherichia coli ECOR27 0.49 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.54 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.89 52
Escherichia coli ECRC62 0.49 BNILDI_08545 leuA 2-isopropylmalate synthase 0.54 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.96 32
Escherichia coli BL21 0.49 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.54 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase 0.80 47
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_03584 3-isopropylmalate dehydrogenase 0.54 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 73
Escherichia coli BW25113 0.49 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.54 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 0.91 38
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_12600 3-isopropylmalate dehydrogenase 0.58 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase low > 62
Shewanella loihica PV-4 0.48 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.56 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.48 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.56 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) 0.88 66
Rhodopseudomonas palustris CGA009 0.48 TX73_001175 3-isopropylmalate dehydrogenase 0.14 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella sp. ANA-3 0.48 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.56 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.92 30
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS15850 3-isopropylmalate dehydrogenase 0.24 CA265_RS11640 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 0.48 CCNA_00193 3-isopropylmalate dehydrogenase 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_00193 3-isopropylmalate dehydrogenase 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Pantoea sp. MT58 0.47 IAI47_16005 3-isopropylmalate dehydrogenase 0.54 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.47 ABZR88_RS11605 3-isopropylmalate dehydrogenase 0.25 ABZR88_RS07000 3-phosphoshikimate 1-carboxyvinyltransferase — —
Erwinia tracheiphila SCR3 0.47 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.51 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.75 29
Shewanella amazonensis SB2B 0.47 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.56 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 62
Lysobacter sp. OAE881 0.44 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.18 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_2062 3-isopropylmalate dehydrogenase 0.25 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.43 CA264_09445 3-isopropylmalate dehydrogenase 0.21 CA264_13100 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS09995 3-isopropylmalate dehydrogenase 0.16 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase 0.17 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS09965 3-isopropylmalate dehydrogenase 0.17 LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.16 LRK54_RS00390 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.18 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase 0.89 59
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.26 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase 0.27 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.27 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 71
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.26 HMPREF1181_RS09330 3-phosphoshikimate 1-carboxyvinyltransferase low > 56
Bacteroides ovatus ATCC 8483 0.39 BACOVA_04600 3-isopropylmalate dehydrogenase 0.28 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.28 BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) — —
Methanococcus maripaludis S2 0.30 MMP_RS04575 homoisocitrate dehydrogenase 0.25 MMP_RS06205 3-phosphoshikimate 1-carboxyvinyltransferase — —

Not shown: 17 genomes with orthologs for BPHYT_RS33900 only; 4 genomes with orthologs for BPHYT_RS14895 only