Conservation of cofitness between BPHYT_RS02610 and BPHYT_RS14895 in Burkholderia phytofirmans PsJN

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS02610 glycerol-3-phosphate dehydrogenase [NAD(P)+] 1.0 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase 0.78 16
Paraburkholderia bryophila 376MFSha3.1 0.95 H281DRAFT_02000 glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.95 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia graminis OAS925 0.92 ABIE53_000667 glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.91 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia sabiae LMG 24235 0.85 QEN71_RS01465 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.90 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.79 32
Ralstonia solanacearum GMI1000 0.62 RS_RS01760 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 0.69 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS10920 glycerol-3-phosphate dehydrogenase 0.69 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase low > 76
Ralstonia solanacearum UW163 0.60 UW163_RS02660 glycerol-3-phosphate dehydrogenase 0.69 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS06770 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.70 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase 0.64 37
Ralstonia solanacearum PSI07 0.58 RPSI07_RS22390 glycerol-3-phosphate dehydrogenase 0.69 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS00795 glycerol-3-phosphate dehydrogenase 0.62 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS01845 glycerol-3-phosphate dehydrogenase 0.67 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase 0.81 12
Lysobacter sp. OAE881 0.42 ABIE51_RS00495 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.18 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.42 DVU3159 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (TIGR) 0.27 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.271.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.15 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 74
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0712 Glycerol-3-phosphate dehydrogenase 0.21 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_13015 gpsA glycerol-3-phosphate dehydrogenase 0.17 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella loihica PV-4 0.39 Shew_3803 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.56 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS10860 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.16 LRK54_RS00390 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS13250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.18 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella sp. ANA-3 0.38 Shewana3_0054 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.56 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Rhodanobacter denitrificans MT42 0.38 LRK55_RS10550 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.17 LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella amazonensis SB2B 0.38 Sama_0063 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) 0.56 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.38 SO0053 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI ptt file) 0.56 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.38 MIT1002_00485 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.53 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodospirillum rubrum S1H 0.37 Rru_A3571 Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI) 0.12 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Azospirillum sp. SherDot2 0.37 MPMX19_02123 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.13 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2234 Glycerol-3-phosphate dehydrogenase 0.14 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Pectobacterium carotovorum WPP14 0.36 HER17_RS20735 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.52 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Azospirillum brasilense Sp245 0.36 AZOBR_RS00325 glycerol-3-phosphate dehydrogenase 0.14 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Serratia liquefaciens MT49 0.36 IAI46_24690 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Rahnella sp. WP5 0.36 EX31_RS14340 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.56 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase — —
Fusobacterium nucleatum SB010 0.36 HUW76_05650 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.21 HUW76_05445 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli BW25113 0.36 b3608 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (NCBI) 0.54 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Escherichia coli ECRC100 0.36 OKFHMN_15755 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC99 0.36 KEDOAH_12395 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECOR38 0.36 HEPCGN_14595 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECOR27 0.36 NOLOHH_07635 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli BL21 0.36 ECD_03466 glycerol-3-phosphate dehydrogenase (NAD+) 0.54 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase — —
Enterobacter asburiae PDN3 0.36 EX28DRAFT_3859 Glycerol-3-phosphate dehydrogenase 0.54 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Escherichia coli ECRC102 0.36 NIAGMN_13515 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC62 0.36 BNILDI_03880 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia fergusonii Becca 0.36 EFB2_00202 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.55 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dadantii 3937 0.36 DDA3937_RS20405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.55 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC101 0.36 MCAODC_06265 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli Nissle 1917 0.36 ECOLIN_RS20595 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.55 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC98 0.36 JDDGAC_19380 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Enterobacter sp. TBS_079 0.36 MPMX20_00125 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.55 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00091 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.54 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase — —
Klebsiella michiganensis M5al 0.36 BWI76_RS27210 glycerol-3-phosphate dehydrogenase 0.54 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola 67-19 0.35 HGI48_RS00795 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola ME23 0.35 DZA65_RS00850 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase — —
Mycobacterium tuberculosis H37Rv 0.35 Rv0564c Probable glycerol-3-phosphate dehydrogenase [NAD(P)+] GpdA1 (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependent dihydroxyacetone-phosphate reductase) 0.16 Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) — —
Caulobacter crescentus NA1000 0.35 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_00068 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF402 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.55 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) — —
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_13405 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 0.58 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pantoea sp. MT58 0.35 IAI47_00740 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.54 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Erwinia tracheiphila SCR3 0.34 LU632_RS21875 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.51 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.57 49
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS15450 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.16 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase 0.48 6
Pseudomonas fluorescens SBW25 0.31 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase 0.39 100
Pseudomonas simiae WCS417 0.30 PS417_09000 glycerol-3-phosphate dehydrogenase 0.21 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase — —
Agrobacterium fabrum C58 0.29 Atu2650 glycerol-3-phosphate dehydrogenase 0.22 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dinoroseobacter shibae DFL-12 0.29 Dshi_3830 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) (RefSeq) 0.14 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Rhizobium sp. OAE497 0.29 ABIE40_RS18055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.24 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phaeobacter inhibens DSM 17395 0.29 PGA1_c35480 glycerol-3-phosphate dehydrogenase GpsA 0.13 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA — —
Sinorhizobium meliloti 1021 0.28 SMc03229 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.17 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bosea sp. OAE506 0.27 ABIE41_RS05655 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.14 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_2522 Glycerol-3-phosphate dehydrogenase (NAD(P)+) 0.15 Synpcc7942_0232 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodopseudomonas palustris CGA009 0.26 TX73_001320 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.14 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_0322 Glycerol-3-phosphate dehydrogenase 0.25 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase — —
Bifidobacterium breve UCC2003 0.21 BBR_RS12080 NAD(P)-dependent glycerol-3-phosphate dehydrogenase 0.17 BBR_RS14370 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides stercoris CC31F 0.20 HMPREF1181_RS08570 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.26 HMPREF1181_RS09330 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.19 BT2123 glycerol-3-phosphate dehydrogenase (NCBI ptt file) 0.28 BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_05630 glycerol-3-phosphate dehydrogenase 0.21 CA264_13100 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Bacteroides ovatus ATCC 8483 0.19 BACOVA_03234 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminal domain protein 0.28 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.18 ABZR88_RS01515 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.25 ABZR88_RS07000 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS16375 glycerol-3-phosphate dehydrogenase 0.24 CA265_RS11640 3-phosphoshikimate 1-carboxyvinyltransferase — —
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS10070 glycerol-3-phosphate dehydrogenase 0.26 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS21145 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.27 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS07270 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.27 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase — —

Not shown: 17 genomes with orthologs for BPHYT_RS02610 only; 4 genomes with orthologs for BPHYT_RS14895 only