| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Kangiella aquimarina DSM 16071 | 1.0 | B158DRAFT_2018 | | tRNA dihydrouridine synthase A | 1.0 | B158DRAFT_0196 | | pyridoxal phosphate enzyme, YggS family | 0.33 | 8 |
| Vibrio cholerae E7946 ATCC 55056 | 0.65 | CSW01_01985 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | low | > 62 |
| Shewanella oneidensis MR-1 | 0.63 | SO3912 | | TIM-barrel protein, yjbN family (NCBI ptt file) | 0.46 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.63 | Shewana3_0718 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.46 | Shewana3_1194 | | hypothetical protein (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.62 | Sama_3055 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.39 | Sama_2477 | | hypothetical protein (RefSeq) | low | > 62 |
| Pantoea sp. MT58 | 0.61 | IAI47_17865 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.42 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Dickeya dadantii 3937 | 0.61 | DDA3937_RS17480 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.43 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Escherichia coli ECRC62 | 0.61 | BNILDI_06330 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Escherichia coli ECRC102 | 0.61 | NIAGMN_10790 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC99 | 0.61 | KEDOAH_15205 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli Nissle 1917 | 0.61 | ECOLIN_RS23355 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.61 | OHPLBJKB_03994 | | tRNA-dihydrouridine(20/20a) synthase | 0.46 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | 0.47 | 7 |
| Escherichia coli ECOR38 | 0.61 | HEPCGN_11560 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | 0.54 | 65 |
| Escherichia coli ECRC98 | 0.61 | JDDGAC_16580 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | low | > 86 |
| Escherichia coli ECRC100 | 0.61 | OKFHMN_12945 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | low | > 80 |
| Escherichia coli ECOR27 | 0.61 | NOLOHH_05195 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | 0.50 | 69 |
| Escherichia coli BW25113 | 0.60 | b4049 | dusA | tRNA-dihydrouridine synthase A (RefSeq) | 0.46 | b2951 | yggS | predicted enzyme (NCBI) | low | > 76 |
| Dickeya dianthicola ME23 | 0.60 | DZA65_RS18620 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.43 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Escherichia fergusonii Becca | 0.60 | EFB2_04556 | | tRNA-dihydrouridine(20/20a) synthase | 0.46 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.60 | GFF1418 | | tRNA dihydrouridine synthase A (EC 1.-.-.-) | 0.44 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 78 |
| Escherichia coli BL21 | 0.60 | ECD_03921 | | tRNA-dihydrouridine synthase A | 0.46 | ECD_02781 | | UPF0001 family protein, PLP-binding | low | > 61 |
| Enterobacter sp. TBS_079 | 0.60 | MPMX20_00265 | | tRNA-dihydrouridine(20/20a) synthase | 0.43 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | low | > 85 |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_4263 | | tRNA dihydrouridine synthase A | 0.43 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | low | > 76 |
| Shewanella loihica PV-4 | 0.60 | Shew_0536 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.45 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | low | > 60 |
| Escherichia coli ECRC101 | 0.60 | MCAODC_03455 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.46 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Serratia liquefaciens MT49 | 0.60 | IAI46_22970 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.44 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.60 | HER17_RS03680 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.45 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Dickeya dianthicola 67-19 | 0.60 | HGI48_RS17540 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.43 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Rahnella sp. WP5 | 0.59 | EX31_RS11865 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.43 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 89 |
| Klebsiella michiganensis M5al | 0.59 | BWI76_RS01900 | | tRNA-dihydrouridine synthase A | 0.45 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | 0.23 | 89 |
| Paraburkholderia sabiae LMG 24235 | 0.57 | QEN71_RS22650 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.42 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 153 |
| Marinobacter adhaerens HP15 | 0.57 | HP15_2240 | | tRNA-dihydrouridine synthase, TIM-barrel, YjbN | 0.39 | HP15_288 | | alanine racemase domain protein | low | > 73 |
| Azospirillum brasilense Sp245 | 0.56 | AZOBR_RS15935 | | tRNA-dihydrouridine synthase A | 0.31 | AZOBR_RS01870 | | alanine racemase | — | — |
| Acinetobacter radioresistens SK82 | 0.56 | MPMX26_00482 | | tRNA-dihydrouridine(20/20a) synthase | 0.43 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | low | > 36 |
| Pseudomonas fluorescens FW300-N2E3 | 0.56 | AO353_00295 | | tRNA-dihydrouridine synthase A | 0.44 | AO353_08160 | | hypothetical protein | low | > 101 |
| Alteromonas macleodii MIT1002 | 0.56 | MIT1002_03387 | | putative tRNA-dihydrouridine synthase | 0.42 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | 0.36 | 35 |
| Azospirillum sp. SherDot2 | 0.56 | MPMX19_00670 | | tRNA-dihydrouridine(20/20a) synthase | 0.28 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | 0.34 | 44 |
| Paraburkholderia graminis OAS925 | 0.55 | ABIE53_001975 | | tRNA-dihydrouridine synthase A | 0.43 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.55 | H281DRAFT_00766 | | tRNA-U16,U17-dihydrouridine synthase | 0.42 | H281DRAFT_04680 | | hypothetical protein | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.55 | BPHYT_RS08700 | | tRNA-dihydrouridine synthase A | 0.43 | BPHYT_RS03495 | | hypothetical protein | low | > 109 |
| Dyella japonica UNC79MFTsu3.2 | 0.55 | ABZR86_RS18350 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Ralstonia solanacearum PSI07 | 0.55 | RPSI07_RS17630 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.36 | RPSI07_RS11725 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 81 |
| Erwinia tracheiphila SCR3 | 0.55 | LU632_RS23765 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.43 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Pseudomonas fluorescens FW300-N1B4 | 0.55 | Pf1N1B4_57 | | tRNA dihydrouridine synthase A | 0.43 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Ralstonia solanacearum UW163 | 0.54 | UW163_RS13175 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.38 | UW163_RS08050 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Synechococcus elongatus PCC 7942 | 0.54 | Synpcc7942_2066 | | tRNA-dihydrouridine synthase A | 0.31 | Synpcc7942_2060 | ylmE | hypothetical protein | low | > 38 |
| Ralstonia solanacearum IBSBF1503 | 0.54 | RALBFv3_RS15730 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.38 | RALBFv3_RS05575 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Pseudomonas fluorescens FW300-N2E2 | 0.54 | Pf6N2E2_2257 | | tRNA dihydrouridine synthase A | 0.44 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.54 | ABZR87_RS11300 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.39 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS12665 | | tRNA-dihydrouridine synthase A | 0.41 | RR42_RS17355 | | hypothetical protein | low | > 128 |
| Pseudomonas fluorescens SBW25-INTG | 0.54 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.42 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.54 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.42 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.54 | HSERO_RS17905 | | tRNA-dihydrouridine synthase A | 0.44 | HSERO_RS18995 | | hypothetical protein | low | > 78 |
| Rhodospirillum rubrum S1H | 0.54 | Rru_A1621 | | Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) | 0.28 | Rru_A1141 | | Protein of unknown function UPF0001 (NCBI) | low | > 58 |
| Pseudomonas simiae WCS417 | 0.54 | PS417_07740 | | tRNA-dihydrouridine synthase A | 0.43 | PS417_26725 | | hypothetical protein | low | > 88 |
| Pseudomonas putida KT2440 | 0.54 | PP_2169 | | tRNA-dihydrouridine synthase A | 0.44 | PP_5094 | | putative enzyme with PLP binding domain | low | > 96 |
| Ralstonia solanacearum GMI1000 | 0.54 | RS_RS06510 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.36 | RS_RS13435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Caulobacter crescentus NA1000 | 0.54 | CCNA_01364 | | NIFR3-like protein | 0.25 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.54 | CCNA_01364 | | NIFR3-like protein | 0.25 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | low | > 67 |
| Pseudomonas sp. S08-1 | 0.54 | OH686_22745 | | tRNA-dihydrouridine(20/20a) synthase | 0.46 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.54 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.46 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.33 | 82 |
| Pseudomonas fluorescens FW300-N2C3 | 0.54 | AO356_02170 | | tRNA-dihydrouridine synthase A | 0.43 | AO356_13425 | | hypothetical protein | low | > 104 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.54 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.46 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Pseudomonas sp. RS175 | 0.54 | PFR28_01143 | | tRNA-dihydrouridine(20/20a) synthase | 0.43 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | low | > 88 |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS13915 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.42 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.52 | Xcc-8004.5010.1 | | tRNA dihydrouridine synthase A | 0.41 | Xcc-8004.1711.1 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.52 | OKGIIK_00625 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.29 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | low | > 52 |
| Lysobacter sp. OAE881 | 0.52 | ABIE51_RS03925 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.41 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.52 | Psest_2706 | | tRNA dihydrouridine synthase A | 0.42 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | low | > 67 |
| Rhodanobacter denitrificans FW104-10B01 | 0.52 | LRK54_RS05995 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.30 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.51 | LRK55_RS05750 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.30 | LRK55_RS02655 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 63 |
| Variovorax sp. SCN45 | 0.51 | GFF928 | | tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) | 0.45 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | — | — |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_2288 | | tRNA dihydrouridine synthase A | 0.39 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 79 |
| Pseudomonas fluorescens GW456-L13 | 0.51 | PfGW456L13_3987 | | tRNA dihydrouridine synthase A | 0.44 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 87 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.51 | GFF4791 | | tRNA dihydrouridine synthase A | 0.43 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 90 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.51 | A4249_RS10515 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | A4249_RS13760 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 48 |
| Rhodopseudomonas palustris CGA009 | 0.50 | TX73_010150 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | TX73_014475 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Rhizobium sp. OAE497 | 0.50 | ABIE40_RS10895 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.28 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Agrobacterium fabrum C58 | 0.49 | Atu1515 | | hypothetical protein | 0.30 | Atu2747 | | hypothetical protein | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.48 | Dshi_2512 | | TIM-barrel protein, yjbN family (RefSeq) | 0.27 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | low | > 64 |
| Bosea sp. OAE506 | 0.48 | ABIE41_RS21285 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 77 |
| Phaeobacter inhibens DSM 17395 | 0.48 | PGA1_c19230 | | tRNA-dihydrouridine synthase A | 0.24 | PGA1_c33360 | | putative alanine racemase | low | > 62 |
| Castellaniella sp019104865 MT123 | 0.46 | ABCV34_RS04335 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.30 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.43 | SMc04235 | | tRNA-dihydrouridine synthase A | 0.27 | SMc02812 | | hypothetical protein | low | > 103 |
Not shown: 0 genomes with orthologs for B158DRAFT_2018 only; 18 genomes with orthologs for B158DRAFT_0196 only