| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu4616 | | dTDP-4-dehydrorhamnose reductase | 1.0 | Atu4618 | | dTDP-rhamnose-3,5-epimerase | 0.81 | 1 |
| Rhizobium sp. OAE497 | 0.57 | ABIE40_RS08665 | | dTDP-4-dehydrorhamnose reductase | 0.71 | ABIE40_RS08675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 107 |
| Rhodopseudomonas palustris CGA009 | 0.48 | TX73_000615 | | dTDP-4-dehydrorhamnose reductase | 0.53 | TX73_000610 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.77 | 10 |
| Bosea sp. OAE506 | 0.48 | ABIE41_RS02860 | | dTDP-4-dehydrorhamnose reductase | 0.54 | ABIE41_RS02855 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.58 | 3 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_1381 | | dTDP-4-dehydrorhamnose reductase (RefSeq) | 0.36 | Shewana3_1382 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | — | — |
| Sinorhizobium meliloti 1021 | 0.46 | SM_b21327 | | dTDP-4-dehydrorhamnose reductase | 0.48 | SM_b21325 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 103 |
| Azospirillum sp. SherDot2 | 0.44 | MPMX19_06726 | | dTDP-4-dehydrorhamnose reductase | 0.50 | MPMX19_06724 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Dickeya dadantii 3937 | 0.44 | DDA3937_RS06750 | | dTDP-4-dehydrorhamnose reductase | 0.39 | DDA3937_RS06745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.59 | 3 |
| Pseudomonas sp. S08-1 | 0.43 | OH686_14365 | | dTDP-4-dehydrorhamnose reductase | 0.35 | OH686_14370 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens SBW25 | 0.43 | PFLU_RS01410 | | dTDP-4-dehydrorhamnose reductase | 0.38 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.43 | PFLU_RS01410 | | dTDP-4-dehydrorhamnose reductase | 0.38 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS07125 | | dTDP-4-dehydrorhamnose reductase | 0.40 | DZA65_RS07120 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.71 | 7 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_01315 | | dTDP-4-dehydrorhamnose reductase | 0.37 | PS417_01320 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_1006 | | dTDP-4-dehydrorhamnose reductase | 0.37 | Psest_4264 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Shewanella loihica PV-4 | 0.42 | Shew_1403 | | dTDP-4-dehydrorhamnose reductase (RefSeq) | 0.39 | Shew_3703 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | low | > 60 |
| Rhodospirillum rubrum S1H | 0.42 | Rru_B0049 | | dTDP-4-dehydrorhamnose reductase (NCBI) | 0.54 | Rru_B0038 | | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI) | low | > 58 |
| Pseudomonas sp. RS175 | 0.42 | PFR28_04891 | | dTDP-4-dehydrorhamnose reductase | 0.38 | PFR28_04892 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_2198 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.38 | PfGW456L13_399 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Ralstonia solanacearum PSI07 | 0.42 | RPSI07_RS20610 | | dTDP-4-dehydrorhamnose reductase | 0.37 | RPSI07_RS20600 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS00915 | | dTDP-4-dehydrorhamnose reductase | 0.37 | UW163_RS00905 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS12650 | | dTDP-4-dehydrorhamnose reductase | 0.37 | RALBFv3_RS12660 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_11870 | | dTDP-4-dehydrorhamnose reductase | 0.37 | AO353_11875 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS03435 | | dTDP-4-dehydrorhamnose reductase | 0.37 | RS_RS03445 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_0925 | | dTDP-4-dehydrorhamnose reductase | 0.38 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_10055 | | dTDP-4-dehydrorhamnose reductase | 0.39 | AO356_10050 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_0925 | | dTDP-4-dehydrorhamnose reductase | 0.38 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS19050 | | NAD(P)-dependent oxidoreductase | 0.39 | BWI76_RS19055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.97 | 1 |
| Dickeya dianthicola 67-19 | 0.40 | HGI48_RS06770 | | dTDP-4-dehydrorhamnose reductase | 0.40 | HGI48_RS06765 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.57 | 43 |
| Acinetobacter radioresistens SK82 | 0.39 | MPMX26_00451 | | dTDP-4-dehydrorhamnose reductase | 0.42 | MPMX26_00453 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.97 | 1 |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_3881 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.39 | Pf6N2E2_3880 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Variovorax sp. OAS795 | 0.38 | ABID97_RS05665 | | dTDP-4-dehydrorhamnose reductase | 0.39 | ABID97_RS05675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.38 | Dshi_4117 | | dTDP-4-dehydrorhamnose reductase (RefSeq) | 0.49 | Dshi_4114 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | 0.67 | 8 |
| Pseudomonas fluorescens FW300-N1B4 | 0.38 | Pf1N1B4_342 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.39 | Pf1N1B4_1664 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.38 | HSERO_RS21855 | | dTDP-4-dehydrorhamnose reductase | 0.38 | HSERO_RS22055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Escherichia fergusonii Becca | 0.38 | EFB2_01814 | | dTDP-4-dehydrorhamnose reductase | 0.41 | EFB2_01816 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Rahnella sp. WP5 | 0.38 | EX31_RS11505 | | dTDP-4-dehydrorhamnose reductase | 0.37 | EX31_RS11510 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas putida KT2440 | 0.37 | PP_1784 | | dTDP-4-dehydrorhamnose reductase | 0.38 | PP_1782 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.37 | HMPREF1078_RS04150 | | dTDP-4-dehydrorhamnose reductase | 0.46 | HMPREF1078_RS00700 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Paraburkholderia graminis OAS925 | 0.37 | ABIE53_001140 | | dTDP-4-dehydrorhamnose reductase | 0.40 | ABIE53_001139 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Escherichia coli BW25113 | 0.37 | b2040 | rfbD | dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) | 0.38 | b2038 | rfbC | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | 0.94 | 1 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.37 | H281DRAFT_04825 | | dTDP-4-dehydrorhamnose reductase | 0.40 | H281DRAFT_04824 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Escherichia coli ECOR38 | 0.37 | HEPCGN_03110 | rfbD | dTDP-4-dehydrorhamnose reductase | 0.39 | HEPCGN_03120 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Escherichia coli BL21 | 0.37 | ECD_01946 | | dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit | 0.39 | ECD_01944 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RmlC) | — | — |
| Acidovorax sp. GW101-3H11 | 0.37 | Ac3H11_1881 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.42 | Ac3H11_1883 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Variovorax sp. SCN45 | 0.37 | GFF6881 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.40 | GFF6879 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS33420 | | dTDP-4-dehydrorhamnose reductase | 0.49 | AZOBR_RS33410 | | dTDP-4-dehydrorhamnose 3 5-epimerase | 0.89 | 1 |
| Phocaeicola dorei CL03T12C01 | 0.36 | ABI39_RS13375 | | dTDP-4-dehydrorhamnose reductase | 0.44 | ABI39_RS12050 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 72 |
| Burkholderia phytofirmans PsJN | 0.36 | BPHYT_RS04280 | | dTDP-4-dehydrorhamnose reductase | 0.39 | BPHYT_RS04275 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Erwinia tracheiphila SCR3 | 0.36 | LU632_RS08855 | rfbD | dTDP-4-dehydrorhamnose reductase | 0.39 | LU632_RS08865 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.87 | 3 |
| Dechlorosoma suillum PS | 0.36 | Dsui_1949 | | dTDP-4-dehydrorhamnose reductase | 0.35 | Dsui_1951 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS15605 | | dTDP-4-dehydrorhamnose reductase | 0.40 | ABIE51_RS15610 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.36 | GFF3888 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.40 | GFF3890 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.98 | 1 |
| Rhodanobacter denitrificans FW104-10B01 | 0.35 | LRK54_RS05680 | | dTDP-4-dehydrorhamnose reductase | 0.38 | LRK54_RS05675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.35 | BT1730 | | putative dTDP-4-dehydrorhamnose reductase (NCBI ptt file) | 0.43 | BT1338 | | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.35 | CCNA_01198 | | dTDP-4-dehydrorhamnose reductase | 0.45 | CCNA_03748 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.35 | CCNA_01198 | | dTDP-4-dehydrorhamnose reductase | 0.45 | CCNA_03748 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.69 | 1 |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS05435 | | dTDP-4-dehydrorhamnose reductase | 0.37 | LRK55_RS05430 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.34 | OHPLBJKB_01662 | | dTDP-4-dehydrorhamnose reductase | 0.44 | OHPLBJKB_01663 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.83 | 1 |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS18720 | | dTDP-4-dehydrorhamnose reductase | 0.42 | ABZR86_RS18725 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.58 | 26 |
| Bacteroides ovatus ATCC 8483 | 0.34 | BACOVA_04459 | | dTDP-4-dehydrorhamnose reductase | 0.38 | BACOVA_02563 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS25740 | | dTDP-4-dehydrorhamnose reductase | 0.40 | QEN71_RS25745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.33 | ABZR88_RS17490 | | dTDP-4-dehydrorhamnose reductase | 0.44 | ABZR88_RS17420 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_65p00230 | | dTDP-4-dehydrorhamnose reductase RfbD | 0.46 | PGA1_65p00250 | | dTDP-4-dehydrorhamnose 3,5-epimerase RfbC | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.33 | Xcc-8004.4483.1 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.41 | Xcc-8004.4484.1 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.33 | GFF1838 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.41 | GFF1840 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.33 | CA265_RS19330 | | dTDP-4-dehydrorhamnose reductase | 0.32 | CA265_RS19335 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Bacteroides stercoris CC31F | 0.32 | HMPREF1181_RS05590 | | dTDP-4-dehydrorhamnose reductase | 0.42 | HMPREF1181_RS14380 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Shewanella amazonensis SB2B | 0.32 | Sama_2239 | | dTDP-4-dehydrorhamnose reductase (RefSeq) | 0.41 | Sama_2237 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.32 | HMPREF1058_RS07940 | | dTDP-4-dehydrorhamnose reductase | 0.43 | HMPREF1058_RS06635 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.31 | OKGIIK_01160 | rfbD | dTDP-4-dehydrorhamnose reductase | 0.39 | OKGIIK_01165 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.71 | 28 |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_03558 | | dTDP-4-dehydrorhamnose reductase | 0.41 | MIT1002_03559 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Synechococcus elongatus PCC 7942 | 0.30 | Synpcc7942_2099 | rfbD | dTDP-4-dehydrorhamnose reductase | 0.41 | Synpcc7942_2098 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.84 | 1 |
| Magnetospirillum magneticum AMB-1 | 0.28 | AMB_RS07440 | | dTDP-4-dehydrorhamnose reductase | 0.42 | AMB_RS07445 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 64 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.26 | DVU1363 | rfbD | dTDP-4-dehydrorhamnose reductase (TIGR) | 0.39 | DVU0698 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) | 0.93 | 1 |
| Desulfovibrio vulgaris Miyazaki F | 0.24 | DvMF_0140 | | dTDP-4-dehydrorhamnose reductase (RefSeq) | 0.44 | DvMF_2692 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | 0.94 | 1 |
| Mycobacterium tuberculosis H37Rv | 0.24 | Rv3266c | | dTDP-6-deoxy-L-lyxo-4-hexulose reductase RmlD (dTDP-rhamnose modification protein) (dTDP-rhamnose biosynthesis protein) (dTDP-rhamnose synthase) | 0.29 | Rv3465 | | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC (dTDP-4-keto-6-deoxyglucose 3,5-epimerase) (dTDP-L-rhamnose synthetase) (thymidine diphospho-4-keto-rhamnose 3,5-epimerase) | — | — |
| Shewanella oneidensis MR-1 | 0.22 | SO1653 | rfbD | dTDP-4-dehydrorhamnose reductase (NCBI ptt file) | 0.29 | SO3160 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) | — | — |
| Fusobacterium nucleatum SB010 | 0.22 | HUW76_01315 | | dTDP-4-dehydrorhamnose reductase | 0.35 | HUW76_01310 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.19 | CA264_19930 | | NAD(P)-dependent oxidoreductase | 0.40 | CA264_15705 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.16 | Echvi_1746 | | dTDP-4-dehydrorhamnose reductase | 0.38 | Echvi_1151 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
Not shown: 3 genomes with orthologs for Atu4616 only; 2 genomes with orthologs for Atu4618 only