| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu0332 | | RNA polymerase sigma-54 factor | 1.0 | Atu0346 | | uridylyltransferase/uridylyl-removing enzyme UTase | 0.46 | 7 |
| Rhizobium sp. OAE497 | 0.69 | ABIE40_RS01860 | | RNA polymerase factor sigma-54 | 0.75 | ABIE40_RS01765 | | [protein-PII] uridylyltransferase | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.64 | SMc01139 | | RNA polymerase factor sigma-54 | 0.72 | SMc01124 | | PII uridylyl-transferase | 0.42 | 10 |
| Rhodopseudomonas palustris CGA009 | 0.51 | TX73_000260 | | RNA polymerase factor sigma-54 | 0.51 | TX73_003060 | | [protein-PII] uridylyltransferase | low | > 86 |
| Bosea sp. OAE506 | 0.48 | ABIE41_RS00125 | | RNA polymerase factor sigma-54 | 0.50 | ABIE41_RS00205 | | [protein-PII] uridylyltransferase | low | > 77 |
| Magnetospirillum magneticum AMB-1 | 0.47 | AMB_RS19925 | | RNA polymerase sigma-54 factor | 0.40 | AMB_RS22650 | | [protein-PII] uridylyltransferase | — | — |
| Rhodospirillum rubrum S1H | 0.46 | Rru_A0010 | | Sigma-54 (RpoN) (NCBI) | 0.41 | Rru_A3539 | | GlnB (protein PII) uridylyltransferase, GlnD (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 | 0.46 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | 0.37 | CCNA_00013 | | protein-PII uridylyltransferase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.46 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | 0.37 | CCNA_00013 | | protein-PII uridylyltransferase | — | — |
| Azospirillum sp. SherDot2 | 0.45 | MPMX19_02668 | | RNA polymerase sigma-54 factor 2 | 0.42 | MPMX19_00912 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | low | > 112 |
| Azospirillum brasilense Sp245 | 0.42 | AZOBR_RS18870 | | RNA polymerase sigma54 factor | 0.42 | AZOBR_RS02110 | | protein-PII uridylyltransferase | 0.70 | 1 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.42 | A4249_RS16075 | | RNA polymerase factor sigma-54 | 0.33 | A4249_RS13590 | | [protein-PII] uridylyltransferase | low | > 48 |
| Sphingomonas koreensis DSMZ 15582 | 0.39 | Ga0059261_2543 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.39 | Ga0059261_2737 | | UTP--GlnB (protein PII) uridylyltransferase, GlnD | 0.62 | 46 |
| Marinobacter adhaerens HP15 | 0.31 | HP15_2442 | | RNA polymerase, sigma 54 subunit, RpoN | 0.21 | HP15_1163 | | [protein-PII] uridylyltransferase | low | > 73 |
| Pseudomonas putida KT2440 | 0.29 | PP_0952 | | RNA polymerase sigma-54 factor | 0.24 | PP_1589 | | uridylyltransferase | — | — |
| Pseudomonas simiae WCS417 | 0.29 | PS417_04345 | | RNA polymerase factor sigma-54 | 0.24 | PS417_06200 | | protein-PII uridylyltransferase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_05180 | | RNA polymerase sigma-54 factor | 0.23 | AO353_16450 | | protein-PII uridylyltransferase | — | — |
| Pseudomonas stutzeri RCH2 | 0.29 | Psest_3313 | | RNA polymerase sigma-54 factor | 0.24 | Psest_2845 | | [Protein-PII] uridylyltransferase | — | — |
| Pseudomonas fluorescens SBW25 | 0.29 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.23 | PFLU_RS06265 | | [protein-PII] uridylyltransferase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.29 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.23 | PFLU_RS06265 | | [protein-PII] uridylyltransferase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | 0.21 | GFF55 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | 0.92 | 2 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.22 | Psyr_1341 | | Protein-P-II uridylyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.22 | Psyr_1341 | | Protein-P-II uridylyltransferase | — | — |
| Pseudomonas sp. S08-1 | 0.29 | OH686_08540 | | RNA polymerase sigma-54 factor | 0.25 | OH686_06495 | | protein-P-II uridylyltransferase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.29 | AO356_07035 | | RNA polymerase sigma-54 factor | 0.23 | AO356_06050 | | protein-PII uridylyltransferase | — | — |
| Dickeya dianthicola 67-19 | 0.28 | HGI48_RS01445 | | RNA polymerase factor sigma-54 | 0.22 | HGI48_RS05105 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 71 |
| Escherichia coli ECOR27 | 0.28 | NOLOHH_09740 | rpoN | RNA polymerase factor sigma-54 | 0.21 | NOLOHH_02580 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli BW25113 | 0.28 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | 0.21 | b0167 | glnD | PII uridylyl-transferase (NCBI) | — | — |
| Escherichia coli ECRC62 | 0.28 | BNILDI_01795 | rpoN | RNA polymerase factor sigma-54 | 0.21 | BNILDI_09090 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Dickeya dianthicola ME23 | 0.28 | DZA65_RS01510 | | RNA polymerase factor sigma-54 | 0.22 | DZA65_RS05445 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 75 |
| Escherichia coli ECRC101 | 0.28 | MCAODC_08460 | rpoN | RNA polymerase factor sigma-54 | 0.21 | MCAODC_00750 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.28 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | 0.23 | PfGW456L13_4711 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | — | — |
| Escherichia coli ECRC102 | 0.28 | NIAGMN_15700 | rpoN | RNA polymerase factor sigma-54 | 0.21 | NIAGMN_08085 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC101 | 0.28 | OKFHMN_17940 | rpoN | RNA polymerase factor sigma-54 | 0.21 | OKFHMN_10235 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC98 | 0.28 | JDDGAC_21565 | rpoN | RNA polymerase factor sigma-54 | 0.21 | JDDGAC_13830 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECOR38 | 0.28 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | 0.21 | HEPCGN_08185 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.28 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | 0.21 | OHPLBJKB_03497 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | — | — |
| Escherichia coli ECRC99 | 0.28 | KEDOAH_10210 | rpoN | RNA polymerase factor sigma-54 | 0.21 | KEDOAH_17920 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia fergusonii Becca | 0.28 | EFB2_00621 | | RNA polymerase sigma-54 factor | 0.21 | EFB2_03878 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | — | — |
| Escherichia coli BL21 | 0.28 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | 0.21 | ECD_00165 | | uridylyltransferase | 0.75 | 1 |
| Escherichia coli Nissle 1917 | 0.28 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | 0.21 | ECOLIN_RS00915 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.28 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | 0.23 | Pf6N2E2_3072 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | — | — |
| Enterobacter asburiae PDN3 | 0.28 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.21 | EX28DRAFT_3754 | | UTP--GlnB (protein PII) uridylyltransferase, GlnD | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.28 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | 0.24 | Pf1N1B4_3081 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.28 | H281DRAFT_01927 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.21 | H281DRAFT_00608 | | UTP--GlnB (protein PII) uridylyltransferase, GlnD | 0.42 | 9 |
| Burkholderia phytofirmans PsJN | 0.28 | BPHYT_RS02905 | | RNA polymerase subunit sigma-54 | 0.21 | BPHYT_RS12150 | | PII uridylyl-transferase | 0.86 | 1 |
| Alteromonas macleodii MIT1002 | 0.28 | MIT1002_00827 | | RNA polymerase sigma-54 factor 2 | 0.19 | MIT1002_01001 | | PII uridylyl-transferase | 0.80 | 59 |
| Pseudomonas sp. RS175 | 0.28 | PFR28_00173 | | RNA polymerase sigma-54 factor | 0.22 | PFR28_00394 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | — | — |
| Enterobacter sp. TBS_079 | 0.28 | MPMX20_04108 | | RNA polymerase sigma-54 factor | 0.21 | MPMX20_00851 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | — | — |
| Klebsiella michiganensis M5al | 0.28 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | 0.21 | BWI76_RS05200 | | bifunctional uridylyltransferase/uridylyl-removing protein | — | — |
| Dickeya dadantii 3937 | 0.28 | DDA3937_RS01530 | | RNA polymerase factor sigma-54 | 0.22 | DDA3937_RS05105 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 74 |
| Paraburkholderia graminis OAS925 | 0.27 | ABIE53_000718 | | RNA polymerase sigma-54 factor | 0.21 | ABIE53_002507 | | [protein-PII] uridylyltransferase | 0.23 | 82 |
| Paraburkholderia sabiae LMG 24235 | 0.27 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | 0.21 | QEN71_RS06410 | | [protein-PII] uridylyltransferase | low | > 153 |
| Erwinia tracheiphila SCR3 | 0.27 | LU632_RS21280 | rpoN | RNA polymerase factor sigma-54 | 0.20 | LU632_RS19980 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Pectobacterium carotovorum WPP14 | 0.27 | HER17_RS20060 | | RNA polymerase factor sigma-54 | 0.21 | HER17_RS16345 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 75 |
| Dechlorosoma suillum PS | 0.27 | Dsui_0704 | | RNA polymerase sigma-54 factor | 0.20 | Dsui_2696 | | (protein-PII) uridylyltransferase | low | > 51 |
| Rahnella sp. WP5 | 0.27 | EX31_RS12400 | | RNA polymerase factor sigma-54 | 0.21 | EX31_RS13045 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 89 |
| Pantoea sp. MT58 | 0.27 | IAI47_17185 | | RNA polymerase factor sigma-54 | 0.21 | IAI47_15540 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 76 |
| Cupriavidus basilensis FW507-4G11 | 0.27 | RR42_RS02085 | | RNA polymerase subunit sigma-54 | 0.20 | RR42_RS11885 | | (protein-PII) uridylyltransferase | 0.59 | 1 |
| Shewanella amazonensis SB2B | 0.27 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | 0.19 | Sama_1137 | | PII uridylyl-transferase (RefSeq) | 0.66 | 3 |
| Ralstonia sp. UNC404CL21Col | 0.27 | ABZR87_RS07060 | | RNA polymerase factor sigma-54 | 0.21 | ABZR87_RS11815 | | [protein-PII] uridylyltransferase | 0.46 | 29 |
| Shewanella oneidensis MR-1 | 0.27 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | 0.18 | SO1626 | glnD | protein-P-II uridylyltransferase (NCBI ptt file) | 0.76 | 3 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | 0.18 | Shewana3_2817 | | PII uridylyl-transferase (RefSeq) | 0.84 | 3 |
| Serratia liquefaciens MT49 | 0.26 | IAI46_22470 | | RNA polymerase factor sigma-54 | 0.21 | IAI46_20270 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.26 | CSW01_12815 | | RNA polymerase sigma-54 factor | 0.20 | CSW01_11520 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.26 | ABZR86_RS19815 | | RNA polymerase factor sigma-54 | 0.19 | ABZR86_RS21575 | | [protein-PII] uridylyltransferase | 0.69 | 5 |
| Shewanella loihica PV-4 | 0.26 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | 0.20 | Shew_2637 | | PII uridylyl-transferase (RefSeq) | 0.73 | 5 |
| Herbaspirillum seropedicae SmR1 | 0.26 | HSERO_RS19855 | | RNA polymerase subunit sigma-54 | 0.21 | HSERO_RS10865 | | PII uridylyl-transferase | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.26 | DvMF_0427 | | RNA polymerase, sigma 54 subunit, RpoN (RefSeq) | 0.13 | DvMF_0864 | | UTP-GlnB uridylyltransferase, GlnD (RefSeq) | — | — |
| Rhodanobacter denitrificans MT42 | 0.26 | LRK55_RS12575 | | RNA polymerase factor sigma-54 | 0.19 | LRK55_RS02995 | | [protein-PII] uridylyltransferase | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.26 | DVU1628 | rpoN | RNA polymerase sigma-54 factor (TIGR) | 0.15 | DVU1233 | glnD | protein-P-II uridylyltransferase, putative (TIGR) | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.26 | LRK54_RS12875 | | RNA polymerase factor sigma-54 | 0.19 | LRK54_RS03245 | | [protein-PII] uridylyltransferase | — | — |
| Ralstonia solanacearum GMI1000 | 0.26 | RS_RS02020 | | RNA polymerase sigma-54 factor | 0.20 | RS_RS07035 | | bifunctional uridylyltransferase/uridylyl-removing protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.25 | OKGIIK_02265 | | RNA polymerase factor sigma-54 | 0.18 | OKGIIK_10125 | glnD | [protein-PII] uridylyltransferase | low | > 52 |
| Ralstonia solanacearum PSI07 | 0.25 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | 0.21 | RPSI07_RS17110 | | [protein-PII] uridylyltransferase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.25 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | 0.20 | RALBFv3_RS00365 | | [protein-PII] uridylyltransferase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.25 | UW163_RS02410 | | RNA polymerase sigma-54 factor | 0.20 | UW163_RS13695 | | [protein-PII] uridylyltransferase | — | — |
| Acidovorax sp. GW101-3H11 | 0.24 | Ac3H11_727 | | RNA polymerase sigma-54 factor RpoN | 0.19 | Ac3H11_537 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | 0.82 | 2 |
| Variovorax sp. OAS795 | 0.24 | ABID97_RS04780 | | RNA polymerase factor sigma-54 | 0.19 | ABID97_RS15665 | | [protein-PII] uridylyltransferase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.23 | GFF3068 | | RNA polymerase sigma-54 factor RpoN | 0.19 | GFF4563 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | low | > 90 |
| Acinetobacter radioresistens SK82 | 0.23 | MPMX26_02592 | | RNA polymerase sigma-54 factor | 0.20 | MPMX26_01867 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | 0.68 | 18 |
| Variovorax sp. SCN45 | 0.23 | GFF6290 | | RNA polymerase sigma-54 factor RpoN | 0.19 | GFF1322 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme | low | > 127 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.23 | Xcc-8004.1662.1 | | RNA polymerase sigma-54 factor RpoN | 0.16 | Xcc-8004.3543.1 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | — | — |
| Kangiella aquimarina DSM 16071 | 0.21 | B158DRAFT_2080 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.20 | B158DRAFT_1072 | | UTP--GlnB (protein PII) uridylyltransferase, GlnD | low | > 40 |
| Castellaniella sp019104865 MT123 | 0.20 | ABCV34_RS12430 | | RNA polymerase factor sigma-54 | 0.19 | ABCV34_RS04120 | | [protein-PII] uridylyltransferase | low | > 48 |
Not shown: 11 genomes with orthologs for Atu0332 only; 2 genomes with orthologs for Atu0346 only