Conservation of cofitness between Atu0528 and Atu0061 in Agrobacterium fabrum C58

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0528 large conductance mechanosensitive channel protein 1.0 Atu0061 ATP-dependent DNA helicase 0.18 12
Sinorhizobium meliloti 1021 0.72 SMc02250 large-conductance mechanosensitive channel 0.50 SMc01566 ATP-dependent DNA helicase low > 103
Rhizobium sp. OAE497 0.70 ABIE40_RS02640 large conductance mechanosensitive channel protein MscL 0.53 ABIE40_RS12745 DNA helicase RecQ low > 107
Bosea sp. OAE506 0.61 ABIE41_RS22180 large conductance mechanosensitive channel protein MscL 0.42 ABIE41_RS04160 DNA helicase RecQ low > 77
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS20250 large conductance mechanosensitive channel protein MscL 0.53 HSERO_RS02465 ATP-dependent DNA helicase RecQ low > 78
Rhodopseudomonas palustris CGA009 0.55 TX73_013925 large conductance mechanosensitive channel protein MscL 0.50 TX73_025080 DNA helicase RecQ low > 86
Phaeobacter inhibens DSM 17395 0.50 PGA1_c07090 large-conductance mechanosensitive channel 0.45 PGA1_c31900 ATP-dependent DNA helicase RecQ low > 62
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS18830 large-conductance mechanosensitive channel 0.51 RR42_RS19310 ATP-dependent DNA helicase RecQ low > 128
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS02390 large conductance mechanosensitive channel protein MscL 0.50 ABZR87_RS02880 DNA helicase RecQ low > 80
Ralstonia solanacearum PSI07 0.48 RPSI07_RS10500 large conductance mechanosensitive channel protein MscL 0.50 RPSI07_RS10025 DNA helicase RecQ low > 81
Ralstonia solanacearum GMI1000 0.47 RS_RS14680 large conductance mechanosensitive channel protein MscL 0.50 RS_RS15155 DNA helicase RecQ — —
Ralstonia solanacearum UW163 0.47 UW163_RS06880 large conductance mechanosensitive channel protein MscL 0.50 UW163_RS06400 DNA helicase RecQ — —
Ralstonia solanacearum IBSBF1503 0.47 RALBFv3_RS06735 large conductance mechanosensitive channel protein MscL 0.50 RALBFv3_RS07220 DNA helicase RecQ low > 76
Acidovorax sp. GW101-3H11 0.47 Ac3H11_4748 Large-conductance mechanosensitive channel 0.45 Ac3H11_3308 ATP-dependent DNA helicase RecQ — —
Variovorax sp. OAS795 0.47 ABID97_RS23050 large conductance mechanosensitive channel protein MscL 0.48 ABID97_RS03395 DNA helicase RecQ low > 91
Dinoroseobacter shibae DFL-12 0.45 Dshi_0241 large conductance mechanosensitive channel protein (RefSeq) 0.44 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) low > 64
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF1296 Large-conductance mechanosensitive channel 0.48 GFF1958 ATP-dependent DNA helicase RecQ low > 90
Sphingomonas koreensis DSMZ 15582 0.45 Ga0059261_2131 large conductance mechanosensitive channel protein 0.40 Ga0059261_2261 ATP-dependent DNA helicase RecQ low > 68
Variovorax sp. SCN45 0.44 GFF5369 Large-conductance mechanosensitive channel 0.46 GFF6415 ATP-dependent DNA helicase RecQ low > 127
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS09275 large-conductance mechanosensitive channel 0.50 BPHYT_RS18145 ATP-dependent DNA helicase RecQ — —
Azospirillum brasilense Sp245 0.44 AZOBR_RS02870 mechanosensitive ion channel protein MscL 0.51 AZOBR_RS02840 ATP-dependent DNA helicase RecQ low > 97
Paraburkholderia graminis OAS925 0.43 ABIE53_002092 large conductance mechanosensitive channel 0.50 ABIE53_003792 ATP-dependent DNA helicase RecQ low > 113
Azospirillum sp. SherDot2 0.43 MPMX19_00116 Large-conductance mechanosensitive channel 0.51 MPMX19_00123 ATP-dependent DNA helicase RecQ low > 112
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_00877 large conductance mechanosensitive channel 0.50 H281DRAFT_06595 ATP-dependent DNA helicase RecQ — —
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS22080 large conductance mechanosensitive channel protein MscL 0.50 QEN71_RS28295 DNA helicase RecQ low > 153
Shewanella sp. ANA-3 0.43 Shewana3_0520 mscL large-conductance mechanosensitive channel (RefSeq) 0.44 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_17275 large conductance mechanosensitive channel protein MscL 0.45 CSW01_01045 DNA helicase RecQ low > 62
Fusobacterium nucleatum SB010 0.42 HUW76_04670 large-conductance mechanosensitive channel protein MscL 0.31 HUW76_07235 DNA helicase RecQ low > 35
Shewanella oneidensis MR-1 0.42 SO0522 mscL large conductance mechanosensitive channel protein (NCBI ptt file) 0.44 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) low > 76
Pseudomonas sp. RS175 0.41 PFR28_03795 Large-conductance mechanosensitive channel 0.50 PFR28_00788 ATP-dependent DNA helicase RecQ low > 88
Pseudomonas putida KT2440 0.41 PP_4645 Large-conductance mechanosensitive channel 0.50 PP_4516 ATP-dependent DNA 3 low > 96
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS10535 large-conductance mechanosensitive channel protein MscL 0.39 HMPREF1078_RS01195 DNA helicase RecQ low > 61
Castellaniella sp019104865 MT123 0.40 ABCV34_RS12640 large conductance mechanosensitive channel protein MscL 0.48 ABCV34_RS07985 DNA helicase RecQ — —
Escherichia coli ECRC101 0.39 MCAODC_08040 mscL large-conductance mechanosensitive channel protein MscL 0.45 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECOR38 0.39 HEPCGN_16340 mscL large-conductance mechanosensitive channel protein MscL 0.45 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ low > 85
Escherichia coli BW25113 0.39 b3291 mscL large-conductance mechanosensitive channel (NCBI) 0.45 b3822 recQ ATP-dependent DNA helicase (NCBI) low > 76
Escherichia coli ECRC99 0.39 KEDOAH_10630 mscL large-conductance mechanosensitive channel protein MscL 0.45 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC102 0.39 NIAGMN_15280 mscL large-conductance mechanosensitive channel protein MscL 0.45 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC101 0.39 OKFHMN_17510 mscL large-conductance mechanosensitive channel protein MscL 0.45 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_2306 large conductance mechanosensitive channel protein 0.41 Echvi_0166 ATP-dependent DNA helicase RecQ — —
Pectobacterium carotovorum WPP14 0.39 HER17_RS02205 large-conductance mechanosensitive channel protein MscL 0.45 HER17_RS01395 ATP-dependent DNA helicase RecQ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00413 Large-conductance mechanosensitive channel 0.45 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ low > 73
Escherichia coli ECRC98 0.39 JDDGAC_21140 mscL large-conductance mechanosensitive channel protein MscL 0.45 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli BL21 0.39 ECD_03141 mechanosensitive channel protein, high conductance 0.45 ECD_03701 ATP-dependent DNA helicase low > 60
Dickeya dianthicola 67-19 0.39 HGI48_RS19235 large-conductance mechanosensitive channel protein MscL 0.44 HGI48_RS20005 ATP-dependent DNA helicase RecQ low > 71
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_15665 large-conductance mechanosensitive channel 0.50 AO356_04050 ATP-dependent DNA helicase RecQ low > 104
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_1441 Large-conductance mechanosensitive channel 0.51 PfGW456L13_4423 ATP-dependent DNA helicase RecQ low > 87
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_5073 Large-conductance mechanosensitive channel 0.50 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ low > 103
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18885 large-conductance mechanosensitive channel protein MscL 0.45 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ low > 52
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_13965 large-conductance mechanosensitive channel 0.50 AO353_18430 ATP-dependent DNA helicase RecQ low > 101
Escherichia coli ECOR27 0.38 NOLOHH_09310 mscL large-conductance mechanosensitive channel protein MscL 0.45 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ low > 57
Escherichia fergusonii Becca 0.38 EFB2_00533 Large-conductance mechanosensitive channel 0.45 EFB2_04815 ATP-dependent DNA helicase RecQ low > 86
Klebsiella michiganensis M5al 0.38 BWI76_RS25690 large-conductance mechanosensitive channel 0.45 BWI76_RS01245 DNA helicase RecQ low > 92
Pantoea sp. MT58 0.38 IAI47_02270 large-conductance mechanosensitive channel protein MscL 0.46 IAI47_18360 ATP-dependent DNA helicase RecQ low > 76
Escherichia coli ECRC62 0.38 BNILDI_02210 mscL large-conductance mechanosensitive channel protein MscL 0.45 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ — —
Dickeya dadantii 3937 0.38 DDA3937_RS19145 large-conductance mechanosensitive channel protein MscL 0.45 DDA3937_RS19850 ATP-dependent DNA helicase RecQ low > 74
Enterobacter asburiae PDN3 0.38 EX28DRAFT_0037 large conductance mechanosensitive channel protein 0.45 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ low > 76
Dickeya dianthicola ME23 0.38 DZA65_RS20360 large-conductance mechanosensitive channel protein MscL 0.45 DZA65_RS21045 ATP-dependent DNA helicase RecQ low > 75
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS10890 large-conductance mechanosensitive channel protein MscL 0.39 A4249_RS14575 DNA helicase RecQ low > 48
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4276 Large-conductance mechanosensitive channel 0.50 Psyr_3738 ATP-dependent DNA helicase RecQ low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4276 Large-conductance mechanosensitive channel 0.50 Psyr_3738 ATP-dependent DNA helicase RecQ low > 86
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2765 Large-conductance mechanosensitive channel 0.50 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ low > 87
Mucilaginibacter yixingensis YX-36 DSM 26809 0.37 ABZR88_RS14575 large-conductance mechanosensitive channel protein MscL 0.39 ABZR88_RS20865 DNA helicase RecQ low > 71
Serratia liquefaciens MT49 0.37 IAI46_23285 large-conductance mechanosensitive channel protein MscL 0.44 IAI46_00770 ATP-dependent DNA helicase RecQ low > 86
Rahnella sp. WP5 0.37 EX31_RS15995 large-conductance mechanosensitive channel protein MscL 0.46 EX31_RS15210 ATP-dependent DNA helicase RecQ low > 89
Pseudomonas fluorescens SBW25 0.37 PFLU_RS26245 large-conductance mechanosensitive channel protein MscL 0.50 PFLU_RS21920 DNA helicase RecQ low > 109
Pseudomonas simiae WCS417 0.37 PS417_24320 large-conductance mechanosensitive channel 0.50 PS417_19950 ATP-dependent DNA helicase RecQ low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_14480 large-conductance mechanosensitive channel 0.42 CA264_20110 DNA helicase RecQ low > 74
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS26245 large-conductance mechanosensitive channel protein MscL 0.50 PFLU_RS21920 DNA helicase RecQ low > 109
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.1277.1 Large-conductance mechanosensitive channel 0.53 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ — —
Pseudomonas sp. S08-1 0.36 OH686_16155 large conductance mechanosensitive channel protein 0.49 OH686_20670 ATP-dependent DNA helicase RecQ low > 80
Pedobacter sp. GW460-11-11-14-LB5 0.36 CA265_RS11000 large-conductance mechanosensitive channel 0.38 CA265_RS08905 DNA helicase RecQ low > 88
Pseudomonas stutzeri RCH2 0.36 Psest_3398 large conductance mechanosensitive channel protein 0.48 Psest_1869 ATP-dependent DNA helicase RecQ low > 67
Bacteroides stercoris CC31F 0.35 HMPREF1181_RS06140 large-conductance mechanosensitive channel protein MscL 0.38 HMPREF1181_RS14110 DNA helicase RecQ low > 56
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS11735 large-conductance mechanosensitive channel protein MscL 0.50 ABZR86_RS19925 DNA helicase RecQ low > 74
Phocaeicola dorei CL03T12C01 0.35 ABI39_RS17980 large-conductance mechanosensitive channel protein MscL 0.39 ABI39_RS10235 DNA helicase RecQ low > 72
Lysobacter sp. OAE881 0.35 ABIE51_RS16585 large-conductance mechanosensitive channel protein MscL 0.48 ABIE51_RS05145 DNA helicase RecQ low > 62
Phocaeicola vulgatus CL09T03C04 0.35 HMPREF1058_RS06045 large-conductance mechanosensitive channel protein MscL 0.39 HMPREF1058_RS14585 DNA helicase RecQ low > 67
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_03700 large-conductance mechanosensitive channel 0.37 CCNA_03578 ATP-dependent DNA helicase recQ low > 67
Caulobacter crescentus NA1000 0.34 CCNA_03700 large-conductance mechanosensitive channel 0.37 CCNA_03578 ATP-dependent DNA helicase recQ low > 66
Enterobacter sp. TBS_079 0.33 MPMX20_04198 Large-conductance mechanosensitive channel 0.45 MPMX20_04458 ATP-dependent DNA helicase RecQ low > 85
Rhodanobacter denitrificans MT42 0.32 LRK55_RS11645 large-conductance mechanosensitive channel protein MscL 0.52 LRK55_RS12700 DNA helicase RecQ — —
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS11920 large-conductance mechanosensitive channel protein MscL 0.52 LRK54_RS13000 DNA helicase RecQ — —
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_11965 mscL large-conductance mechanosensitive channel protein MscL 0.51 OKGIIK_02375 recQ DNA helicase RecQ low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF2388 Large-conductance mechanosensitive channel 0.44 GFF248 ATP-dependent DNA helicase RecQ low > 78
Bacteroides thetaiotaomicron VPI-5482 0.31 BT4264 putative ion channel (NCBI ptt file) 0.37 BT3844 ATP-dependent DNA helicase recQ (NCBI ptt file) — —

Not shown: 6 genomes with orthologs for Atu0528 only; 9 genomes with orthologs for Atu0061 only