| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Brevundimonas sp. GW460-12-10-14-LB2 | 1.0 | A4249_RS08425 | | class I SAM-dependent RNA methyltransferase | 1.0 | A4249_RS12390 | | ATP-dependent protease subunit HslV | 0.51 | 19 |
| Caulobacter crescentus NA1000 Δfur | 0.57 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.83 | CCNA_03843 | | ATP-dependent endopeptidase hsl proteolytic subunit HslV | low | > 67 |
| Caulobacter crescentus NA1000 | 0.57 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.83 | CCNA_03843 | | ATP-dependent endopeptidase hsl proteolytic subunit HslV | low | > 66 |
| Bosea sp. OAE506 | 0.38 | ABIE41_RS22255 | | RNA methyltransferase | 0.68 | ABIE41_RS04430 | | ATP-dependent protease subunit HslV | low | > 77 |
| Agrobacterium fabrum C58 | 0.36 | Atu0735 | | RNA methyltransferase | 0.61 | Atu0044 | | heat shock protein hslV | low | > 89 |
| Rhodopseudomonas palustris CGA009 | 0.36 | TX73_004885 | | methyltransferase | 0.70 | TX73_001600 | | ATP-dependent protease subunit HslV | low | > 86 |
| Rhizobium sp. OAE497 | 0.36 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | 0.60 | ABIE40_RS19465 | | ATP-dependent protease subunit HslV | low | > 107 |
| Dinoroseobacter shibae DFL-12 | 0.35 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | 0.69 | Dshi_3440 | | 20S proteasome A and B subunits (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.34 | PGA1_c34810 | | putative RNA methyltransferase | 0.66 | PGA1_c35260 | | ATP-dependent protease HslV | low | > 62 |
| Sinorhizobium meliloti 1021 | 0.32 | SMc00974 | | RNA methyltransferase | 0.66 | SMc02575 | | ATP-dependent protease peptidase subunit | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.30 | Ga0059261_0648 | | SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase | 0.66 | Ga0059261_3341 | | ATP-dependent protease HslVU, peptidase subunit | low | > 68 |
| Azospirillum brasilense Sp245 | 0.26 | AZOBR_RS01195 | | RNA methyltransferase | 0.68 | AZOBR_RS01655 | | peptidase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.26 | AMB_RS01660 | | class I SAM-dependent RNA methyltransferase | 0.68 | AMB_RS22950 | | HslU--HslV peptidase proteolytic subunit | low | > 64 |
| Azospirillum sp. SherDot2 | 0.26 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.68 | MPMX19_02548 | | ATP-dependent protease subunit HslV | low | > 112 |
| Rhodospirillum rubrum S1H | 0.24 | Rru_A2107 | | 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) | 0.69 | Rru_A3599 | | 20S proteasome, A and B subunits (NCBI) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.17 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.58 | CSW01_13515 | | HslU--HslV peptidase proteolytic subunit | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.17 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | LU632_RS19670 | hslV | ATP-dependent protease subunit HslV | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.17 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.52 | HER17_RS00855 | | ATP-dependent protease subunit HslV | low | > 75 |
| Pantoea sp. MT58 | 0.17 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.53 | IAI47_00850 | | ATP-dependent protease subunit HslV | low | > 76 |
| Serratia liquefaciens MT49 | 0.17 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.53 | IAI46_24570 | | ATP-dependent protease subunit HslV | low | > 86 |
| Shewanella oneidensis MR-1 | 0.16 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | 0.53 | SO4162 | hslV | ATP-dependent protease HslV (NCBI ptt file) | low | > 76 |
| Escherichia coli ECOR38 | 0.16 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | HEPCGN_12380 | hslV | ATP-dependent protease subunit HslV | low | > 87 |
| Escherichia coli Nissle 1917 | 0.16 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | ECOLIN_RS22640 | | ATP-dependent protease subunit HslV | low | > 55 |
| Escherichia coli BW25113 | 0.16 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | 0.54 | b3932 | hslV | ATP-dependent protease peptidase subunit (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.16 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | OHPLBJKB_04119 | | ATP-dependent protease subunit HslV | low | > 73 |
| Shewanella sp. ANA-3 | 0.16 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.53 | Shewana3_3699 | | ATP-dependent protease peptidase subunit (RefSeq) | low | > 73 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.16 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.53 | Psyr_0395 | | HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.16 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.53 | Psyr_0395 | | HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B | low | > 86 |
| Escherichia coli BL21 | 0.16 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | 0.54 | ECD_03817 | | peptidase component of the HslUV protease | low | > 61 |
| Enterobacter asburiae PDN3 | 0.16 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.55 | EX28DRAFT_4405 | | ATP-dependent protease HslVU, peptidase subunit | low | > 76 |
| Escherichia fergusonii Becca | 0.16 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | EFB2_04686 | | ATP-dependent protease subunit HslV | low | > 86 |
| Shewanella amazonensis SB2B | 0.16 | Sama_1032 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.57 | Sama_0441 | | ATP-dependent protease peptidase subunit (RefSeq) | low | > 62 |
| Escherichia coli ECRC62 | 0.16 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.53 | BNILDI_05650 | hslV | ATP-dependent protease subunit HslV | low | > 75 |
| Escherichia coli ECRC101 | 0.16 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | MCAODC_04235 | hslV | ATP-dependent protease subunit HslV | low | > 87 |
| Dickeya dadantii 3937 | 0.16 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.53 | DDA3937_RS00920 | | ATP-dependent protease subunit HslV | low | > 74 |
| Escherichia coli ECRC98 | 0.16 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | JDDGAC_17360 | hslV | ATP-dependent protease subunit HslV | low | > 86 |
| Escherichia coli ECRC102 | 0.16 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | NIAGMN_11490 | hslV | ATP-dependent protease subunit HslV | — | — |
| Escherichia coli ECRC99 | 0.16 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | KEDOAH_14425 | hslV | ATP-dependent protease subunit HslV | — | — |
| Escherichia coli ECRC100 | 0.16 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | OKFHMN_13735 | hslV | ATP-dependent protease subunit HslV | low | > 80 |
| Escherichia coli ECOR27 | 0.16 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | NOLOHH_05880 | hslV | ATP-dependent protease subunit HslV | low | > 75 |
| Pseudomonas stutzeri RCH2 | 0.15 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.51 | Psest_3936 | | ATP-dependent protease HslVU, peptidase subunit | low | > 67 |
| Enterobacter sp. TBS_079 | 0.15 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.55 | MPMX20_04537 | | ATP-dependent protease subunit HslV | low | > 85 |
| Kangiella aquimarina DSM 16071 | 0.15 | B158DRAFT_2275 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.56 | B158DRAFT_0748 | | ATP-dependent protease HslVU, peptidase subunit | low | > 40 |
| Rhodanobacter denitrificans MT42 | 0.15 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.56 | LRK55_RS08290 | | ATP-dependent protease subunit HslV | — | — |
| Klebsiella michiganensis M5al | 0.15 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.54 | BWI76_RS00755 | | ATP-dependent protease subunit HslV | low | > 92 |
| Rahnella sp. WP5 | 0.15 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.53 | EX31_RS14240 | | ATP-dependent protease subunit HslV | low | > 89 |
| Dyella japonica UNC79MFTsu3.2 | 0.15 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.59 | ABZR86_RS15035 | | ATP-dependent protease subunit HslV | low | > 74 |
| Marinobacter adhaerens HP15 | 0.15 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | 0.57 | HP15_466 | | ATP-dependent protease peptidase subunit | low | > 73 |
| Dickeya dianthicola ME23 | 0.15 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.52 | DZA65_RS21500 | | ATP-dependent protease subunit HslV | low | > 75 |
| Rhodanobacter sp. FW510-T8 | 0.14 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.55 | OKGIIK_15320 | hslV | ATP-dependent protease subunit HslV | — | — |
| Shewanella loihica PV-4 | 0.14 | Shew_1201 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.56 | Shew_0375 | | ATP-dependent protease peptidase subunit (RefSeq) | — | — |
| Pseudomonas sp. S08-1 | 0.14 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.54 | OH686_10095 | | ATP-dependent protease HslVU, peptidase subunit | low | > 80 |
| Dechlorosoma suillum PS | 0.14 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.60 | Dsui_0581 | | ATP-dependent protease HslVU, peptidase subunit | low | > 51 |
| Rhodanobacter denitrificans FW104-10B01 | 0.14 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.56 | LRK54_RS08525 | | ATP-dependent protease subunit HslV | — | — |
| Dickeya dianthicola 67-19 | 0.14 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.52 | HGI48_RS20455 | | ATP-dependent protease subunit HslV | low | > 71 |
| Castellaniella sp019104865 MT123 | 0.14 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.58 | ABCV34_RS13415 | | ATP-dependent protease subunit HslV | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.14 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.56 | GFF552 | | ATP-dependent protease HslV (EC 3.4.25.-) | low | > 90 |
| Pseudomonas putida KT2440 | 0.14 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | PP_5000 | | peptidase component of the ATP-dependent HslVU protease | low | > 96 |
| Ralstonia solanacearum IBSBF1503 | 0.14 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.55 | RALBFv3_RS09630 | | ATP-dependent protease subunit HslV | low | > 76 |
| Ralstonia solanacearum UW163 | 0.14 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.55 | UW163_RS03950 | | ATP-dependent protease subunit HslV | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.14 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.52 | QEN71_RS00335 | | ATP-dependent protease subunit HslV | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.14 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.54 | ABZR87_RS05115 | | ATP-dependent protease subunit HslV | low | > 80 |
| Alteromonas macleodii MIT1002 | 0.13 | MIT1002_00793 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.52 | MIT1002_03660 | | ATP-dependent protease subunit HslV | low | > 70 |
| Ralstonia solanacearum GMI1000 | 0.13 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.55 | RS_RS00215 | | HslU--HslV peptidase proteolytic subunit | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.13 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.55 | RPSI07_RS23735 | | ATP-dependent protease subunit HslV | low | > 81 |
| Pseudomonas fluorescens SBW25-INTG | 0.13 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.56 | PFLU_RS01965 | | ATP-dependent protease subunit HslV | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.13 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.56 | PFLU_RS01965 | | ATP-dependent protease subunit HslV | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.13 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.55 | Pf1N1B4_1552 | | ATP-dependent protease HslV (EC 3.4.25.-) | — | — |
| Acidovorax sp. GW101-3H11 | 0.13 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.61 | Ac3H11_2004 | | ATP-dependent protease HslV (EC 3.4.25.-) | low | > 79 |
| Pseudomonas fluorescens FW300-N2E2 | 0.13 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.48 | Pf6N2E2_3769 | | ATP-dependent protease HslV (EC 3.4.25.-) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.13 | AO356_19055 | | 23S rRNA methyltransferase | 0.48 | AO356_09455 | | ATP-dependent protease subunit HslV | low | > 104 |
| Herbaspirillum seropedicae SmR1 | 0.13 | HSERO_RS14825 | | 23S rRNA methyltransferase | 0.54 | HSERO_RS00910 | | peptidase | low | > 78 |
| Pseudomonas simiae WCS417 | 0.13 | PS417_20155 | | 23S rRNA methyltransferase | 0.56 | PS417_01920 | | ATP-dependent protease subunit HslV | low | > 88 |
| Lysobacter sp. OAE881 | 0.12 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.49 | ABIE51_RS03040 | | ATP-dependent protease subunit HslV | low | > 62 |
| Pseudomonas sp. RS175 | 0.12 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.48 | PFR28_04999 | | ATP-dependent protease subunit HslV | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.12 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.59 | RR42_RS01060 | | peptidase | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.12 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.52 | H281DRAFT_02206 | | HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.12 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.48 | PfGW456L13_289 | | ATP-dependent protease HslV (EC 3.4.25.-) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.12 | AO353_02715 | | 23S rRNA methyltransferase | 0.55 | AO353_12430 | | ATP-dependent protease subunit HslV | — | — |
| Variovorax sp. SCN45 | 0.12 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | 0.60 | GFF4484 | | ATP-dependent protease subunit HslV (EC 3.4.25.2) | low | > 127 |
| Burkholderia phytofirmans PsJN | 0.12 | BPHYT_RS09125 | | 23S rRNA methyltransferase | 0.52 | BPHYT_RS01635 | | ATP-dependent protease subunit HslV | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.11 | DVU0924 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) | 0.55 | DVU1577 | hslV | ATP-dependent protease hslV (TIGR) | low | > 55 |
Not shown: 6 genomes with orthologs for A4249_RS08425 only; 5 genomes with orthologs for A4249_RS12390 only