Conservation of cofitness between SO0760 and SO0330 in Shewanella oneidensis MR-1

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO0760 amt ammonium transporter (NCBI ptt file) 1.0 SO0330 conserved hypothetical protein (NCBI ptt file) 0.54 17
Shewanella sp. ANA-3 0.98 Shewana3_3531 Rh family protein/ammonium transporter (RefSeq) 0.93 Shewana3_3841 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.90 Shew_0847 Rh family protein/ammonium transporter (RefSeq) 0.78 Shew_0262 hypothetical protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.86 Sama_0651 Rh-like protein/ammonium transporter (RefSeq) 0.29 Sama_2755 hypothetical protein (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.75 CSW01_03200 ammonium transporter 0.41 CSW01_09655 SELO family protein 0.51 47
Pseudomonas segetis P6 0.64 ACVTMO_RS22540 ammonium transporter 0.41 ACVTMO_RS20940 selO protein adenylyltransferase SelO low > 75
Pseudomonas sp. S08-1 0.64 OH686_13765 Ammonium transporter 0.40 OH686_09805 UPF0061 protein YdiU low > 80
Pseudomonas stutzeri RCH2 0.63 Psest_3771 probable ammonium transporter, marine subtype 0.39 Psest_0396 Uncharacterized conserved protein low > 67
Marinobacter adhaerens HP15 0.58 HP15_274 ammonium/methylammonium permease 0.40 HP15_1144 protein belonging to uncharacterized protein family UPF0061 low > 73
Alteromonas macleodii MIT1002 0.57 MIT1002_00417 Ammonia transporter 0.16 MIT1002_03272 hypothetical protein low > 70
Phaeobacter inhibens DSM 17395 0.49 PGA1_c29410 ammonium transporter 0.30 PGA1_c11360 Uncharacterized conserved protein low > 62
Dinoroseobacter shibae DFL-12 0.47 Dshi_0144 ammonium transporter (RefSeq) 0.29 Dshi_1157 protein of unknown function UPF0061 (RefSeq) low > 64
Cellulophaga baltica 18 0.36 M666_RS19300 ammonium transporter 0.31 M666_RS02400 YdiU family protein low > 67
Variovorax sp. SCN45 0.24 GFF6676 Ammonium transporter 0.37 GFF1330 UPF0061 protein YdiU low > 127
Variovorax sp. OAS795 0.24 ABID97_RS20920 ammonium transporter 0.38 ABID97_RS15700 protein adenylyltransferase SelO low > 91
Acidovorax sp. GW101-3H11 0.24 Ac3H11_1462 Ammonium transporter 0.40 Ac3H11_2534 Selenoprotein O and cysteine-containing homologs low > 79
Acinetobacter radioresistens SK82 0.22 MPMX26_00674 Ammonia channel 0.29 MPMX26_02624 Protein adenylyltransferase SelO low > 36
Paraburkholderia sabiae LMG 24235 0.22 QEN71_RS23255 ammonium transporter 0.38 QEN71_RS21900 YdiU family protein low > 153
Paraburkholderia graminis OAS925 0.22 ABIE53_001796 Amt family ammonium transporter 0.38 ABIE53_002149 uncharacterized protein YdiU (UPF0061 family) low > 113
Burkholderia phytofirmans PsJN 0.21 BPHYT_RS07910 ammonium transporter 0.38 BPHYT_RS09550 hypothetical protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_05071 ammonium transporter 0.38 H281DRAFT_00914 Uncharacterized conserved protein YdiU, UPF0061 family low > 103
Acinetobacter baumannii LAC-4 0.21 RR41_RS03785 ammonium transporter 0.28 RR41_RS03080 YdiU family protein low > 55
Dechlorosoma suillum PS 0.21 Dsui_1062 ammonia permease 0.29 Dsui_1465 hypothetical protein low > 51
Serratia liquefaciens MT49 0.21 IAI46_05085 ammonium transporter AmtB 0.42 IAI46_11065 YdiU family protein low > 87
Enterobacter sp. TBS_079 0.20 MPMX20_01043 Ammonia channel 0.43 MPMX20_01907 Protein adenylyltransferase SelO low > 85
Enterobacter asburiae PDN3 0.20 EX28DRAFT_2518 ammonium transporter 0.42 EX28DRAFT_1713 Uncharacterized conserved protein low > 76
Pseudomonas lactucae CFBP13502 0.20 GEMAOFIL_01859 Ammonia channel 0.43 GEMAOFIL_00665 Protein adenylyltransferase SelO low > 96
Methylophilus sp. DMC18 0.20 GFF105 Ammonia channel 0.29 GFF616 Protein adenylyltransferase SelO low > 43
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS28950 ammonium transporter 0.38 RR42_RS11160 hypothetical protein low > 128
Pectobacterium carotovorum WPP14 0.20 HER17_RS15785 ammonium transporter AmtB 0.45 HER17_RS08850 YdiU family protein low > 75
Pseudomonas simiae WCS417 0.20 PS417_08635 ammonium transporter 0.43 PS417_02140 hypothetical protein low > 88
Pseudomonas orientalis W4I3 0.20 QF045_RS11350 ammonium transporter 0.43 QF045_RS05205 YdiU family protein low > 93
Herbaspirillum seropedicae SmR1 0.20 HSERO_RS02900 ammonium transporter 0.39 HSERO_RS11220 hypothetical protein low > 78
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF4368 Ammonium transporter 0.43 GFF3534 Selenoprotein O and cysteine-containing homologs low > 78
Klebsiella pneumoniae MKP103 0.20 KDGMDA_14685 ammonium transporter AmtB 0.42 KDGMDA_24305 protein adenylyltransferase SelO low > 95
Pseudomonas fluorescens SBW25-INTG 0.20 PFLU_RS08590 ammonium transporter 0.43 PFLU_RS02195 YdiU family protein low > 109
Rahnella sp. WP5 0.20 EX31_RS22320 ammonium transporter AmtB 0.43 EX31_RS13970 YdiU family protein low > 89
Pseudomonas fluorescens SBW25 0.20 PFLU_RS08590 ammonium transporter 0.43 PFLU_RS02195 YdiU family protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.20 AO353_19220 ammonium transporter 0.42 AO353_12770 hypothetical protein low > 101
Klebsiella michiganensis M5al 0.19 BWI76_RS06605 ammonium transporter 0.43 BWI76_RS17085 hypothetical protein low > 92
Escherichia coli Nissle 1917 0.19 ECOLIN_RS02700 ammonium transporter AmtB 0.42 ECOLIN_RS09535 protein adenylyltransferase SelO low > 55
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_2267 Ammonium transporter 0.43 PfGW456L13_231 Selenoprotein O and cysteine-containing homologs low > 87
Escherichia fergusonii Becca 0.19 EFB2_03606 Ammonia channel 0.42 EFB2_02285 Protein adenylyltransferase SelO low > 86
Escherichia coli ECRC98 0.19 JDDGAC_11915 amtB ammonium transporter AmtB 0.42 JDDGAC_01700 selO protein adenylyltransferase SelO low > 87
Escherichia coli ECRC102 0.19 NIAGMN_06315 amtB ammonium transporter AmtB 0.42 NIAGMN_00940 selO protein adenylyltransferase SelO low > 80
Erwinia amylovora T8 0.19 OLJFJH_17905 ammonium transporter AmtB 0.42 OLJFJH_14650 YdiU family protein low > 58
Escherichia coli ECOR27 0.19 NOLOHH_01195 amtB ammonium transporter AmtB 0.42 NOLOHH_17645 selO protein adenylyltransferase SelO low > 76
Escherichia coli ECOR38 0.19 HEPCGN_06875 amtB ammonium transporter AmtB 0.42 HEPCGN_05490 selO protein adenylyltransferase SelO low > 88
Escherichia coli BL21 0.19 ECD_00403 ammonium transporter 0.42 ECD_01675 UPF0061 family protein low > 61
Escherichia coli ECRC99 0.19 KEDOAH_19705 amtB ammonium transporter AmtB 0.42 KEDOAH_00985 selO protein adenylyltransferase SelO — —
Escherichia coli ECRC100 0.19 OKFHMN_08260 amtB ammonium transporter AmtB 0.42 OKFHMN_27125 selO protein adenylyltransferase SelO low > 79
Escherichia coli ECRC101 0.19 MCAODC_27485 amtB ammonium transporter AmtB 0.42 MCAODC_18285 selO protein adenylyltransferase SelO low > 87
Escherichia coli BW25113 0.19 b0451 amtB ammonium transporter (NCBI) 0.43 b1706 ydiU hypothetical protein (NCBI) low > 76
Erwinia tracheiphila HP pepo 2.2 0.19 IJEDHG_16515 amtB ammonium transporter AmtB 0.41 IJEDHG_25400 YdiU family protein low > 61
Erwinia tracheiphila SCR3 0.19 LU632_RS18270 amtB ammonium transporter AmtB 0.41 LU632_RS10980 YdiU family protein low > 73
Ralstonia sp. UNC404CL21Col 0.19 ABZR87_RS06040 ammonium transporter 0.35 ABZR87_RS12630 protein adenylyltransferase SelO low > 80
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_2430 Ammonium transporter 0.42 Pf6N2E2_3692 Selenoprotein O and cysteine-containing homologs low > 103
Pantoea agglomerans CFBP13505 P0401 0.19 PagCFBP13505_RS10615 ammonium transporter AmtB 0.42 PagCFBP13505_RS17670 YdiU family protein low > 74
Pantoea sp. MT58 0.19 IAI47_14580 ammonium transporter AmtB 0.41 IAI47_10920 YdiU family protein low > 76
Pseudomonas sp. SVBP6 0.18 COO64_RS05245 ammonium transporter 0.40 COO64_RS13240 selO protein adenylyltransferase SelO low > 93
Pseudomonas sp. DMC3 0.18 GFF4581 Ammonia channel 0.40 GFF3135 Protein adenylyltransferase SelO low > 89
Dickeya dianthicola ME23 0.18 DZA65_RS06070 ammonium transporter AmtB 0.42 DZA65_RS13470 YdiU family protein low > 75
Dickeya dianthicola 67-19 0.18 HGI48_RS05745 ammonium transporter AmtB 0.42 HGI48_RS13010 YdiU family protein low > 71
Pseudomonas fluorescens FW300-N2C3 0.18 AO356_03020 ammonium transporter 0.42 AO356_09050 hypothetical protein low > 104
Lysobacter sp. OAE881 0.18 ABIE51_RS01435 ammonium transporter 0.31 ABIE51_RS12255 protein adenylyltransferase SelO low > 62
Pseudomonas sp. RS175 0.18 PFR28_00998 Ammonia channel 0.44 PFR28_05043 Protein adenylyltransferase SelO low > 88
Pseudomonas fluorescens FW300-N1B4 0.18 Pf1N1B4_243 Ammonium transporter 0.43 Pf1N1B4_1498 Selenoprotein O and cysteine-containing homologs low > 87
Dyella japonica UNC79MFTsu3.2 0.18 ABZR86_RS09495 ammonium transporter 0.34 ABZR86_RS00335 protein adenylyltransferase SelO low > 74
Xanthomonas campestris pv. campestris strain 8004 0.18 Xcc-8004.249.1 Ammonium transporter 0.33 Xcc-8004.2272.1 Selenoprotein O and cysteine-containing homologs low > 74
Pseudomonas putida KT2440 0.18 PP_2106 putative Ammonium transporter 0.44 PP_5068 conserved protein of unknown function, UPF0061 family low > 96
Rhodopseudomonas palustris CGA009 0.18 TX73_001425 ammonium transporter 0.30 TX73_015750 YdiU family protein low > 86
Pseudomonas sp. BP01 0.18 JOY50_RS22045 ammonium transporter 0.44 JOY50_RS09370 selO protein adenylyltransferase SelO low > 84
Pseudomonas aeruginosa MRSN321 0.18 DY961_RS01760 ammonium transporter 0.41 DY961_RS10935 YdiU family protein low > 100
Pseudomonas aeruginosa PUPa3 0.18 DQ20_RS33815 ammonium transporter 0.41 DQ20_RS51140 YdiU family protein low > 101
Pseudomonas aeruginosa PA14 0.18 IKLFDK_15465 ammonium transporter 0.41 IKLFDK_28420 YdiU family protein low > 98
Rhizobium sp. OAE497 0.16 ABIE40_RS18420 ammonium transporter 0.30 ABIE40_RS04755 protein adenylyltransferase SelO low > 107
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_2277 ammonium transporter 0.42 Psyr_0494 Protein of unknown function UPF0061 low > 86
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_2277 ammonium transporter 0.42 Psyr_0494 Protein of unknown function UPF0061 low > 86
Dickeya dadantii 3937 0.16 DDA3937_RS05700 ammonium transporter AmtB 0.42 DDA3937_RS12935 YdiU family protein low > 74
Ralstonia solanacearum UW163 0.16 UW163_RS02730 ammonia channel protein 0.36 UW163_RS14490 YdiU family protein — —
Ralstonia solanacearum IBSBF1503 0.16 RALBFv3_RS10850 ammonia channel protein 0.36 RALBFv3_RS01180 YdiU family protein low > 76
Ralstonia solanacearum PSI07 0.16 RPSI07_RS22460 ammonia channel protein 0.36 RPSI07_RS16295 YdiU family protein low > 81
Ralstonia solanacearum GMI1000 0.16 RS_RS01690 ammonium transporter 0.36 RS_RS08830 YdiU family protein low > 80
Sinorhizobium meliloti 1021 0.15 SMc03807 ammonium transporter 0.29 SMc00453 hypothetical protein low > 103
Castellaniella sp019104865 MT123 0.15 ABCV34_RS04770 ammonium transporter 0.33 ABCV34_RS04315 YdiU family protein low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.15 GFF1892 Ammonium transporter 0.38 GFF4580 Selenoprotein O and cysteine-containing homologs low > 90
Rhodanobacter denitrificans MT42 0.14 LRK55_RS07860 ammonium transporter 0.32 LRK55_RS15710 YdiU family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS08110 ammonium transporter 0.32 LRK54_RS15955 YdiU family protein low > 59
Bosea sp. OAE506 0.14 ABIE41_RS04755 ammonium transporter 0.27 ABIE41_RS01530 protein adenylyltransferase SelO low > 77
Rhodanobacter sp000427505 FW510-R12 0.14 LRK53_RS00315 ammonium transporter 0.32 LRK53_RS12815 YdiU family protein low > 59
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_09145 ammonia channel protein 0.33 CA264_03360 hypothetical protein low > 74
Agrobacterium fabrum C58 0.13 Atu2758 ammonium transporter 0.29 Atu0945 hypothetical protein low > 89
Rhodanobacter sp. FW510-T8 0.13 OKGIIK_14925 Ammonium transporter 0.32 OKGIIK_09030 selO YdiU family protein low > 53
Xanthobacter sp. DMC5 0.13 GFF3985 Ammonia channel 0.31 GFF2077 Protein adenylyltransferase SelO — —

Not shown: 27 genomes with orthologs for SO0760 only; 0 genomes with orthologs for SO0330 only