| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Shewanella oneidensis MR-1 | 1.0 | SO2432 | | conserved hypothetical protein TIGR01033 (NCBI ptt file) | 1.0 | SO0010 | recF | DNA replication and repair protein RecF (NCBI ptt file) | 0.24 | 15 |
| Shewanella sp. ANA-3 | 0.99 | Shewana3_1954 | | hypothetical protein (RefSeq) | 0.97 | Shewana3_0011 | recF | recombination protein F (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.85 | Shew_2078 | | hypothetical protein (RefSeq) | 0.83 | Shew_0003 | | DNA replication and repair protein RecF (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.80 | Sama_1842 | | hypothetical protein (RefSeq) | 0.81 | Sama_0015 | recF | recombination protein F (RefSeq) | low | > 62 |
| Dickeya dadantii 3937 | 0.76 | DDA3937_RS10065 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.46 | DDA3937_RS21285 | | DNA replication/repair protein RecF | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.76 | HER17_RS11855 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.47 | HER17_RS00015 | | DNA replication/repair protein RecF | low | > 75 |
| Dickeya dianthicola ME23 | 0.75 | DZA65_RS10510 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.46 | DZA65_RS00015 | | DNA replication/repair protein RecF | low | > 75 |
| Dickeya dianthicola 67-19 | 0.75 | HGI48_RS10095 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.46 | HGI48_RS00015 | | DNA replication/repair protein RecF | low | > 71 |
| Rahnella sp. WP5 | 0.73 | EX31_RS11685 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.47 | EX31_RS05975 | | DNA replication/repair protein RecF | low | > 89 |
| Pantoea agglomerans CFBP13505 P0401 | 0.73 | PagCFBP13505_RS02315 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.48 | PagCFBP13505_RS19305 | | DNA replication/repair protein RecF | low | > 74 |
| Serratia liquefaciens MT49 | 0.73 | IAI46_14635 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.47 | IAI46_00015 | | DNA replication/repair protein RecF | low | > 86 |
| Pantoea sp. MT58 | 0.72 | IAI47_08435 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.47 | IAI47_00015 | | DNA replication/repair protein RecF | low | > 76 |
| Erwinia amylovora T8 | 0.72 | OLJFJH_12845 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.47 | OLJFJH_05150 | | DNA replication/repair protein RecF | low | > 58 |
| Enterobacter asburiae PDN3 | 0.72 | EX28DRAFT_0693 | | DNA-binding regulatory protein, YebC/PmpR family | 0.45 | EX28DRAFT_3987 | | DNA replication and repair protein RecF | low | > 76 |
| Escherichia coli Nissle 1917 | 0.71 | ECOLIN_RS10380 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.45 | ECOLIN_RS21310 | | DNA replication/repair protein RecF | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.71 | OHPLBJKB_01864 | | putative transcriptional regulatory protein YebC | 0.45 | OHPLBJKB_00003 | | DNA replication and repair protein RecF | low | > 74 |
| Escherichia coli ECOR27 | 0.71 | NOLOHH_16700 | | putative transcriptional regulatory protein YebC | 0.45 | NOLOHH_07165 | recF | DNA replication/repair protein RecF | low | > 76 |
| Escherichia coli BL21 | 0.71 | ECD_01835 | | UPF0082 family protein | 0.45 | ECD_03583 | | gap repair protein | low | > 61 |
| Escherichia coli ECRC100 | 0.71 | OKFHMN_26255 | | putative transcriptional regulatory protein YebC | 0.45 | OKFHMN_15025 | recF | DNA replication/repair protein RecF | low | > 79 |
| Escherichia coli ECOR38 | 0.71 | HEPCGN_04665 | | putative transcriptional regulatory protein YebC | 0.45 | HEPCGN_13720 | recF | DNA replication/repair protein RecF | 0.44 | 14 |
| Escherichia coli ECRC102 | 0.71 | NIAGMN_01805 | | putative transcriptional regulatory protein YebC | 0.45 | NIAGMN_12780 | recF | DNA replication/repair protein RecF | — | — |
| Escherichia coli ECRC62 | 0.71 | BNILDI_15490 | | putative transcriptional regulatory protein YebC | 0.45 | BNILDI_04365 | recF | DNA replication/repair protein RecF | low | > 75 |
| Escherichia coli ECRC101 | 0.71 | MCAODC_19150 | | putative transcriptional regulatory protein YebC | 0.45 | MCAODC_05535 | recF | DNA replication/repair protein RecF | low | > 88 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.71 | GFF1645 | | FIG000859: hypothetical protein YebC | 0.45 | GFF1756 | | DNA recombination and repair protein RecF | low | > 78 |
| Enterobacter sp. TBS_079 | 0.71 | MPMX20_02769 | | putative transcriptional regulatory protein YebC | 0.45 | MPMX20_00003 | | DNA replication and repair protein RecF | low | > 85 |
| Escherichia coli ECRC98 | 0.71 | JDDGAC_00830 | | putative transcriptional regulatory protein YebC | 0.45 | JDDGAC_18645 | recF | DNA replication/repair protein RecF | 0.30 | 10 |
| Escherichia fergusonii Becca | 0.71 | EFB2_02078 | | putative transcriptional regulatory protein YebC | 0.45 | EFB2_00003 | | DNA replication and repair protein RecF | low | > 86 |
| Escherichia coli ECRC99 | 0.71 | KEDOAH_01850 | | putative transcriptional regulatory protein YebC | 0.45 | KEDOAH_13125 | recF | DNA replication/repair protein RecF | — | — |
| Escherichia coli BW25113 | 0.71 | b1864 | yebC | hypothetical protein (NCBI) | 0.45 | b3700 | recF | recombination protein F (NCBI) | low | > 76 |
| Klebsiella pneumoniae MKP103 | 0.71 | KDGMDA_25425 | | putative transcriptional regulatory protein KPK_1906 | 0.45 | KDGMDA_08670 | | DNA replication/repair protein RecF | low | > 95 |
| Klebsiella michiganensis M5al | 0.70 | BWI76_RS18160 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.44 | BWI76_RS00010 | | DNA replication and repair protein RecF | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.70 | IJEDHG_22125 | tACO1 | YebC/PmpR family DNA-binding transcriptional regulator | 0.47 | IJEDHG_09800 | recF | DNA replication/repair protein RecF | — | — |
| Erwinia tracheiphila SCR3 | 0.70 | LU632_RS13425 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.47 | LU632_RS00015 | recF | DNA replication/repair protein RecF | low | > 74 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.70 | Psyr_1407 | | Protein of unknown function DUF28 | 0.43 | Psyr_0003 | | DNA replication and repair protein RecF | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.70 | Psyr_1407 | | Protein of unknown function DUF28 | 0.43 | Psyr_0003 | | DNA replication and repair protein RecF | low | > 86 |
| Pseudomonas sp. RS175 | 0.69 | PFR28_03415 | | Transcriptional regulatory protein PmpR | 0.43 | PFR28_04593 | | DNA replication and repair protein RecF | low | > 88 |
| Pseudomonas sp. DMC3 | 0.69 | GFF5187 | | Transcriptional regulatory protein PmpR | 0.43 | GFF578 | | DNA replication and repair protein RecF | low | > 89 |
| Pseudomonas fluorescens FW300-N2E2 | 0.69 | Pf6N2E2_5534 | | FIG000859: hypothetical protein YebC | 0.42 | Pf6N2E2_4197 | | DNA recombination and repair protein RecF | low | > 103 |
| Pseudomonas sp. SVBP6 | 0.69 | COO64_RS20085 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.43 | COO64_RS02120 | recF | DNA replication/repair protein RecF | low | > 93 |
| Pseudomonas fluorescens FW300-N2C3 | 0.69 | AO356_18010 | | hypothetical protein | 0.42 | AO356_11635 | | recombinase RecF | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.68 | PfGW456L13_1850 | | FIG000859: hypothetical protein YebC | 0.41 | PfGW456L13_664 | | DNA recombination and repair protein RecF | low | > 87 |
| Pseudomonas sp. BP01 | 0.67 | JOY50_RS01830 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.42 | JOY50_RS08340 | recF | DNA replication/repair protein RecF | low | > 84 |
| Pseudomonas stutzeri RCH2 | 0.67 | Psest_1494 | | DNA-binding regulatory protein, YebC/PmpR family | 0.44 | Psest_0004 | | recF protein | — | — |
| Pseudomonas aeruginosa PA14 | 0.66 | IKLFDK_04360 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.44 | IKLFDK_25545 | | DNA replication/repair protein RecF | low | > 100 |
| Pseudomonas putida KT2440 | 0.66 | PP_1214 | | putative transcriptional regulatory protein | 0.42 | PP_0012 | | DNA replication and repair protein | low | > 96 |
| Pseudomonas fluorescens FW300-N1B4 | 0.66 | Pf1N1B4_640 | | FIG000859: hypothetical protein YebC | 0.43 | Pf1N1B4_1927 | | DNA recombination and repair protein RecF | — | — |
| Marinobacter adhaerens HP15 | 0.65 | HP15_2043 | | protein YebC | 0.34 | HP15_3705 | | DNA replication and repair protein recF | low | > 73 |
| Pseudomonas fluorescens FW300-N2E3 | 0.65 | AO353_03595 | | hypothetical protein | 0.43 | AO353_10480 | | recombinase RecF | low | > 101 |
| Pseudomonas lactucae CFBP13502 | 0.65 | GEMAOFIL_04644 | | Transcriptional regulatory protein PmpR | 0.43 | GEMAOFIL_00183 | | DNA replication and repair protein RecF | low | > 93 |
| Pseudomonas segetis P6 | 0.65 | MPMX49_01682 | | Transcriptional regulatory protein PmpR | 0.42 | MPMX49_00255 | | DNA replication and repair protein RecF | low | > 75 |
| Pseudomonas fluorescens SBW25 | 0.64 | PFLU_RS24100 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.43 | PFLU_RS00015 | | DNA replication/repair protein RecF | low | > 109 |
| Pseudomonas simiae WCS417 | 0.64 | PS417_22460 | | hypothetical protein | 0.42 | PS417_00015 | | recombinase RecF | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.64 | PFLU_RS24100 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.43 | PFLU_RS00015 | | DNA replication/repair protein RecF | low | > 109 |
| Pseudomonas sp. S08-1 | 0.63 | OH686_19120 | | Probable transcriptional regulatory protein YebC | 0.43 | OH686_12620 | | DNA recombination and repair protein RecF | low | > 80 |
| Kangiella aquimarina DSM 16071 | 0.63 | B158DRAFT_1123 | | DNA-binding regulatory protein, YebC/PmpR family | 0.38 | B158DRAFT_0366 | | DNA replication and repair protein RecF | low | > 40 |
| Acinetobacter baumannii LAC-4 | 0.60 | RR41_RS11700 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.33 | RR41_RS00015 | | DNA replication/repair protein RecF | — | — |
| Acinetobacter radioresistens SK82 | 0.58 | MPMX26_01851 | | putative transcriptional regulatory protein YebC | 0.33 | MPMX26_00003 | | DNA replication and repair protein RecF | low | > 36 |
| Fusobacterium nucleatum SB010 | 0.54 | HUW76_01460 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.16 | HUW76_00025 | | DNA replication/repair protein RecF | — | — |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS05035 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.28 | ABIE51_RS00765 | | DNA replication/repair protein RecF | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.50 | Xcc-8004.1434.1 | | FIG000859: hypothetical protein YebC | 0.29 | Xcc-8004.4.1 | | DNA recombination and repair protein RecF | low | > 74 |
| Phaeobacter inhibens DSM 17395 | 0.48 | PGA1_c21770 | | DNA-binding regulatory protein, YebC/PmpR family | 0.13 | PGA1_c00030 | | DNA replication and repair protein RecF | — | — |
| Sphingobium sp. HT1-2 | 0.46 | GFF491 | | Probable transcriptional regulatory protein YebC | 0.12 | GFF730 | | DNA recombination and repair protein RecF | — | — |
| Dinoroseobacter shibae DFL-12 | 0.45 | Dshi_2762 | | protein of unknown function DUF28 (RefSeq) | 0.12 | Dshi_3375 | | SMC domain protein (RefSeq) | low | > 64 |
| Bosea sp. OAE506 | 0.45 | ABIE41_RS09460 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.14 | ABIE41_RS04170 | | DNA replication/repair protein RecF | low | > 77 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS04700 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.27 | LRK55_RS08240 | | DNA replication/repair protein RecF | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS04920 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.28 | LRK54_RS08475 | | DNA replication/repair protein RecF | low | > 59 |
| Mycobacterium tuberculosis H37Rv | 0.44 | Rv2603c | | Highly conserved protein | 0.11 | Rv0003 | | DNA replication and repair protein RecF (single-strand DNA binding protein) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.44 | AMB_RS16265 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.14 | AMB_RS03285 | | DNA replication and repair protein RecF | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.44 | LRK53_RS05110 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.28 | LRK53_RS00015 | | DNA replication/repair protein RecF | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_01830 | tACO1 | YebC/PmpR family DNA-binding transcriptional regulator | 0.27 | OKGIIK_15255 | recF | DNA replication/repair protein RecF | low | > 53 |
| Sphingomonas koreensis DSMZ 15582 | 0.44 | Ga0059261_0824 | | DNA-binding regulatory protein, YebC/PmpR family | 0.13 | Ga0059261_2727 | | DNA replication and repair protein RecF | — | — |
| Sinorhizobium meliloti 1021 | 0.43 | SMc03969 | | hypothetical protein | 0.13 | SMc02863 | | recombination protein F | low | > 103 |
| Agrobacterium fabrum C58 | 0.43 | Atu3727 | | hypothetical protein | 0.15 | Atu0073 | | recF-like protein | low | > 89 |
| Rhodopseudomonas palustris CGA009 | 0.42 | TX73_005640 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.16 | TX73_000015 | | DNA replication/repair protein RecF | low | > 86 |
| Rhizobium sp. OAE497 | 0.42 | ABIE40_RS15665 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.14 | ABIE40_RS00200 | | DNA replication/repair protein RecF | low | > 107 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_01650 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.14 | CA264_17475 | | DNA replication and repair protein RecF | low | > 74 |
| Rhodospirillum rubrum S1H | 0.41 | Rru_A1086 | | hypothetical protein (RefSeq) | 0.12 | Rru_A0003 | | RecF protein (NCBI) | — | — |
| Bifidobacterium breve UCC2003 | 0.41 | BBR_RS15645 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.15 | BBR_RS10265 | | DNA replication and repair protein RecF | — | — |
| Azospirillum brasilense Sp245 | 0.41 | AZOBR_RS09035 | | transcriptional regulator | 0.16 | AZOBR_RS17670 | | recombinase RecF | low | > 97 |
| Xanthobacter sp. DMC5 | 0.41 | GFF83 | | putative transcriptional regulatory protein | 0.14 | GFF3876 | | DNA replication and repair protein RecF | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.40 | ABZR86_RS10850 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.29 | ABZR86_RS15145 | | DNA replication/repair protein RecF | — | — |
| Azospirillum sp. SherDot2 | 0.40 | MPMX19_00695 | | putative transcriptional regulatory protein | 0.17 | MPMX19_02716 | | DNA replication and repair protein RecF | — | — |
| Synechococcus elongatus PCC 7942 | 0.37 | Synpcc7942_1017 | | hypothetical protein | 0.09 | Synpcc7942_2250 | recF | recombination protein F | low | > 38 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.36 | A4249_RS15840 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.10 | A4249_RS15360 | | DNA replication/repair protein RecF | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.35 | CCNA_03352 | | YebC/PmpR transcriptional regulator | 0.11 | CCNA_00158 | | DNA replication and repair protein recF | low | > 67 |
| Caulobacter crescentus NA1000 | 0.35 | CCNA_03352 | | YebC/PmpR transcriptional regulator | 0.11 | CCNA_00158 | | DNA replication and repair protein recF | low | > 66 |
| Synechocystis sp000284455 PCC 6803 | 0.33 | SGL_RS12485 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.09 | SGL_RS07025 | | DNA replication/repair protein RecF | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.30 | ABZR88_RS22270 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.17 | ABZR88_RS21650 | | DNA replication/repair protein RecF | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.29 | CA265_RS15330 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.16 | CA265_RS24760 | | DNA replication and repair protein RecF | 0.43 | 72 |
| Bacteroides ovatus ATCC 8483 | 0.29 | BACOVA_02249 | | DNA-binding regulatory protein, YebC/PmpR family | 0.16 | BACOVA_05088 | | DNA replication and repair protein RecF | low | > 96 |
| Cellulophaga baltica 18 | 0.29 | M666_RS11570 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.14 | M666_RS11055 | | DNA replication and repair protein RecF | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.28 | BT0627 | | conserved hypothetical protein, with a conserved domain of unknown function (NCBI ptt file) | 0.16 | BT4255 | | DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) | — | — |
| Parabacteroides merdae CL09T00C40 | 0.28 | HMPREF1078_RS09835 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.15 | HMPREF1078_RS14620 | | DNA replication and repair protein RecF | low | > 61 |
| Phocaeicola dorei CL03T12C01 | 0.28 | ABI39_RS17640 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.16 | ABI39_RS13135 | | DNA replication and repair protein RecF | low | > 72 |
| Bacteroides stercoris CC31F | 0.28 | HMPREF1181_RS16620 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.17 | HMPREF1181_RS06185 | | DNA replication and repair protein RecF | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.28 | HMPREF1058_RS03510 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.16 | HMPREF1058_RS17135 | | DNA replication and repair protein RecF | low | > 67 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.26 | Echvi_1239 | | DNA-binding regulatory protein, YebC/PmpR family | 0.15 | Echvi_1156 | | recF protein | low | > 79 |
Not shown: 20 genomes with orthologs for SO2432 only; 2 genomes with orthologs for SO0010 only