Conservation of cofitness between b2892 and b1863 in Escherichia coli BW25113

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 1.0 b1863 ruvC Holliday junction resolvase (NCBI) 0.50 6
Escherichia coli ECRC102 0.99 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 NIAGMN_01795 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC98 0.99 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 JDDGAC_00840 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC101 0.99 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 MCAODC_19140 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC101 0.99 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 OKFHMN_26265 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC99 0.99 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 KEDOAH_01840 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia fergusonii Becca 0.99 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ 1.00 EFB2_02079 Crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECOR27 0.99 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 NOLOHH_16710 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli BL21 0.99 ECD_02724 ssDNA exonuclease, 5 1.00 ECD_01834 component of RuvABC resolvasome, endonuclease — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ 1.00 ECOLIN_RS10375 crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC62 0.99 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 BNILDI_15500 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ 1.00 OHPLBJKB_01865 Crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECOR38 0.99 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 HEPCGN_04675 ruvC crossover junction endodeoxyribonuclease RuvC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.92 GFF1644 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ 0.92 EX28DRAFT_0694 Holliday junction endonuclease RuvC (EC 3.1.22.4) — —
Klebsiella michiganensis M5al 0.89 BWI76_RS23805 ssDNA exonuclease RecJ 0.91 BWI76_RS18155 crossover junction endodeoxyribonuclease RuvC — —
Enterobacter sp. TBS_079 0.89 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ 0.91 MPMX20_02768 Crossover junction endodeoxyribonuclease RuvC low > 85
Serratia liquefaciens MT49 0.79 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ 0.81 IAI46_14630 crossover junction endodeoxyribonuclease RuvC — —
Pantoea sp. MT58 0.77 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ 0.83 IAI47_08440 crossover junction endodeoxyribonuclease RuvC low > 76
Dickeya dianthicola 67-19 0.77 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ 0.82 HGI48_RS10100 crossover junction endodeoxyribonuclease RuvC — —
Dickeya dianthicola ME23 0.77 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ 0.82 DZA65_RS10515 crossover junction endodeoxyribonuclease RuvC — —
Rahnella sp. WP5 0.76 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ 0.82 EX31_RS11680 crossover junction endodeoxyribonuclease RuvC — —
Dickeya dadantii 3937 0.76 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ 0.81 DDA3937_RS10070 crossover junction endodeoxyribonuclease RuvC — —
Erwinia tracheiphila SCR3 0.72 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ 0.79 LU632_RS13420 ruvC crossover junction endodeoxyribonuclease RuvC — —
Pectobacterium carotovorum WPP14 0.72 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ 0.73 HER17_RS11850 crossover junction endodeoxyribonuclease RuvC low > 75
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ 0.71 CSW01_09250 crossover junction endodeoxyribonuclease RuvC low > 62
Shewanella sp. ANA-3 0.58 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.58 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) — —
Shewanella loihica PV-4 0.57 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.59 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.32 59
Shewanella oneidensis MR-1 0.57 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.57 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) 0.37 28
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1298 exonuclease RecJ 0.53 Psyr_1408 Holliday junction endonuclease RuvC low > 86
Pseudomonas simiae WCS417 0.57 PS417_22855 ssDNA exonuclease RecJ 0.53 PS417_22455 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1298 exonuclease RecJ 0.53 Psyr_1408 Holliday junction endonuclease RuvC low > 86
Shewanella amazonensis SB2B 0.57 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.53 Sama_1841 ruvC Holliday junction resolvase (RefSeq) — —
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.53 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC low > 109
Pseudomonas fluorescens SBW25 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.53 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC low > 109
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_06345 single-stranded-DNA-specific exonuclease RecJ 0.54 AO356_18015 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas sp. S08-1 0.56 OH686_06955 single-stranded-DNA-specific exonuclease RecJ 0.53 OH686_19125 crossover junction endodeoxyribonuclease RuvC low > 80
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.54 Pf6N2E2_5535 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.54 Pf1N1B4_639 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Pseudomonas putida KT2440 0.55 PP_1477 ssDNA-specific exonuclease RecJ 0.48 PP_1215 Crossover junction endodeoxyribonuclease RuvC low > 96
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.54 PfGW456L13_1851 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) low > 87
Pseudomonas sp. RS175 0.55 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ 0.54 PFR28_03414 Crossover junction endodeoxyribonuclease RuvC low > 88
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_04320 single-stranded-DNA-specific exonuclease RecJ 0.54 AO353_03590 crossover junction endodeoxyribonuclease RuvC low > 101
Alteromonas macleodii MIT1002 0.53 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ 0.56 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas stutzeri RCH2 0.53 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.54 Psest_1495 crossover junction endodeoxyribonuclease RuvC — —
Marinobacter adhaerens HP15 0.50 HP15_766 bacterial RecJ exonuclease 0.53 HP15_2042 crossover junction endodeoxyribonuclease RuvC — —
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ 0.53 B158DRAFT_1124 Holliday junction endonuclease RuvC (EC 3.1.22.4) low > 40
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ 0.36 ABZR86_RS10845 crossover junction endodeoxyribonuclease RuvC — —
Dechlorosoma suillum PS 0.44 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ 0.43 Dsui_0486 crossover junction endodeoxyribonuclease RuvC — —
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.37 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Acinetobacter radioresistens SK82 0.42 MPMX26_02917 Single-stranded-DNA-specific exonuclease RecJ 0.48 MPMX26_01780 Crossover junction endodeoxyribonuclease RuvC — —
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ 0.34 OKGIIK_01835 ruvC crossover junction endodeoxyribonuclease RuvC — —
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS06090 single-stranded DNA exonuclease 0.44 RR42_RS02715 Holliday junction DNA helicase — —
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS13965 single-stranded DNA exonuclease 0.44 HSERO_RS02080 Holliday junction resolvase — —
Ralstonia solanacearum GMI1000 0.41 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ 0.46 RS_RS02500 crossover junction endodeoxyribonuclease RuvC — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ 0.46 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC — —
Acidovorax sp. GW101-3H11 0.41 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.46 Ac3H11_4050 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Ralstonia solanacearum UW163 0.41 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ 0.46 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC — —
Ralstonia solanacearum PSI07 0.41 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ 0.46 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ 0.35 LRK54_RS04915 crossover junction endodeoxyribonuclease RuvC — —
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS05835 single-stranded-DNA-specific exonuclease RecJ 0.44 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ 0.47 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC low > 80
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_00488 exonuclease RecJ 0.45 H281DRAFT_04253 Holliday junction endonuclease RuvC — —
Variovorax sp. OAS795 0.40 ABID97_RS22940 single-stranded-DNA-specific exonuclease RecJ 0.43 ABID97_RS06275 crossover junction endodeoxyribonuclease RuvC low > 91
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS12730 single-stranded DNA exonuclease 0.45 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC — —
Paraburkholderia graminis OAS925 0.39 ABIE53_002771 single-stranded-DNA-specific exonuclease 0.45 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC — —
Variovorax sp. SCN45 0.39 GFF6700 Single-stranded-DNA-specific exonuclease RecJ 0.43 GFF4462 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) low > 127
Castellaniella sp019104865 MT123 0.38 ABCV34_RS05005 single-stranded-DNA-specific exonuclease RecJ 0.29 ABCV34_RS07975 crossover junction endodeoxyribonuclease RuvC — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.41 GFF572 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS07725 single-stranded-DNA-specific exonuclease RecJ 0.35 HMPREF1078_RS13315 crossover junction endodeoxyribonuclease RuvC low > 61
Bacteroides thetaiotaomicron VPI-5482 0.24 BT3939 single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) 0.31 BT_1664 ruvC Holliday junction resolvase (RefSeq) — —
Pedobacter sp. GW460-11-11-14-LB5 0.24 CA265_RS25225 single-stranded-DNA-specific exonuclease RecJ 0.34 CA265_RS18025 crossover junction endodeoxyribonuclease RuvC — —
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS10550 single-stranded-DNA-specific exonuclease RecJ 0.33 ABI39_RS15265 crossover junction endodeoxyribonuclease RuvC — —
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS14835 single-stranded-DNA-specific exonuclease RecJ 0.33 HMPREF1058_RS01800 crossover junction endodeoxyribonuclease RuvC low > 67
Bacteroides ovatus ATCC 8483 0.24 BACOVA_01165 single-stranded-DNA-specific exonuclease RecJ 0.31 BACOVA_04396 crossover junction endodeoxyribonuclease RuvC — —
Rhodospirillum rubrum S1H 0.24 Rru_A2408 RecJ exonuclease (NCBI) 0.29 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_1332 single-stranded-DNA-specific exonuclease RecJ 0.35 Echvi_0087 crossover junction endodeoxyribonuclease RuvC — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS06545 single-stranded-DNA-specific exonuclease RecJ 0.32 HMPREF1181_RS05370 crossover junction endodeoxyribonuclease RuvC low > 56
Bosea sp. OAE506 0.24 ABIE41_RS19130 single-stranded-DNA-specific exonuclease RecJ 0.34 ABIE41_RS09470 crossover junction endodeoxyribonuclease RuvC 0.24 31
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_17545 single-stranded-DNA-specific exonuclease RecJ 0.34 CA264_03880 crossover junction endodeoxyribonuclease RuvC — —
Rhodopseudomonas palustris CGA009 0.23 TX73_012960 single-stranded-DNA-specific exonuclease RecJ 0.29 TX73_005650 crossover junction endodeoxyribonuclease RuvC — —
Phaeobacter inhibens DSM 17395 0.23 PGA1_c08630 single-stranded-DNA-specific exonuclease RecJ 0.35 PGA1_c05850 crossover junction endodeoxyribonuclease RuvC — —
Magnetospirillum magneticum AMB-1 0.23 AMB_RS18875 single-stranded-DNA-specific exonuclease RecJ 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC — —
Desulfovibrio vulgaris Hildenborough JW710 0.22 DVU0904 recJ single-stranded-DNA-specific exonuclease RecJ (TIGR) 0.34 DVU2258 ruvC crossover junction endodeoxyribonuclease RuvC (TIGR) low > 55
Rhodanobacter denitrificans MT42 0.17 LRK55_RS18310 DHHA1 domain-containing protein 0.35 LRK55_RS04695 crossover junction endodeoxyribonuclease RuvC — —

Not shown: 8 genomes with orthologs for b2892 only; 5 genomes with orthologs for b1863 only