Conservation of cofitness between b3822 and b1114 in Escherichia coli BW25113

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3822 recQ ATP-dependent DNA helicase (NCBI) 1.0 b1114 mfd transcription-repair coupling factor (NCBI) 0.24 11
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 1.00 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Escherichia fergusonii Becca 1.00 EFB2_04815 ATP-dependent DNA helicase RecQ 1.00 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECOR38 1.00 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 1.00 HEPCGN_24015 mfd transcription-repair coupling factor low > 85
Escherichia coli ECRC101 1.00 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 1.00 OKFHMN_03470 mfd transcription-repair coupling factor — —
Escherichia coli ECRC98 1.00 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 1.00 JDDGAC_07130 mfd transcription-repair coupling factor — —
Escherichia coli ECRC102 1.00 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 1.00 NIAGMN_24360 mfd transcription-repair coupling factor — —
Escherichia coli ECRC99 1.00 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 1.00 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECOR27 1.00 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 1.00 NOLOHH_20995 mfd transcription-repair coupling factor low > 57
Escherichia coli ECRC62 1.00 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 1.00 BNILDI_19160 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 1.00 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 1.00 MCAODC_22830 mfd transcription-repair coupling factor — —
Escherichia coli BL21 1.00 ECD_03701 ATP-dependent DNA helicase 1.00 ECD_01110 transcription-repair coupling factor low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF248 ATP-dependent DNA helicase RecQ 0.96 GFF3397 Transcription-repair coupling factor low > 78
Enterobacter sp. TBS_079 0.93 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.92 MPMX20_01795 Transcription-repair-coupling factor low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.93 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Klebsiella michiganensis M5al 0.92 BWI76_RS01245 DNA helicase RecQ 0.93 BWI76_RS11205 transcription-repair coupling factor low > 92
Pectobacterium carotovorum WPP14 0.82 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.84 HER17_RS08775 transcription-repair coupling factor low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.84 LU632_RS14730 mfd transcription-repair coupling factor low > 74
Pantoea sp. MT58 0.82 IAI47_18360 ATP-dependent DNA helicase RecQ 0.83 IAI47_11975 transcription-repair coupling factor low > 76
Rahnella sp. WP5 0.81 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.82 EX31_RS24520 transcription-repair coupling factor low > 89
Serratia liquefaciens MT49 0.81 IAI46_00770 ATP-dependent DNA helicase RecQ 0.83 IAI46_10320 transcription-repair coupling factor low > 86
Dickeya dianthicola ME23 0.80 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.81 DZA65_RS13530 transcription-repair coupling factor low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.82 HGI48_RS13065 transcription-repair coupling factor low > 71
Dickeya dadantii 3937 0.80 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.82 DDA3937_RS13000 transcription-repair coupling factor low > 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_01045 DNA helicase RecQ 0.65 CSW01_09445 transcription-repair coupling factor low > 62
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.56 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.58 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.56 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Shewanella amazonensis SB2B 0.58 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) 0.57 14
Shewanella loihica PV-4 0.57 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.56 Shew_1630 transcription-repair coupling factor (RefSeq) 0.52 26
Alteromonas macleodii MIT1002 0.53 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.58 MIT1002_01646 Transcription-repair-coupling factor low > 70
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.53 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas putida KT2440 0.45 PP_4516 ATP-dependent DNA 3 0.53 PP_2148 transcription-repair coupling factor low > 96
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.53 PFR28_01123 Transcription-repair-coupling factor low > 88
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS02465 ATP-dependent DNA helicase RecQ 0.46 HSERO_RS15180 transcription-repair coupling factor 0.25 74
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.53 AO356_02270 transcription-repair coupling factor low > 104
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.53 Pf6N2E2_2278 Transcription-repair coupling factor low > 103
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.53 Pf1N1B4_3916 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS21920 DNA helicase RecQ 0.53 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25 0.45 PFLU_RS21920 DNA helicase RecQ 0.53 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas simiae WCS417 0.45 PS417_19950 ATP-dependent DNA helicase RecQ 0.53 PS417_07635 transcription-repair coupling factor low > 88
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS13000 DNA helicase RecQ 0.50 LRK54_RS02040 transcription-repair coupling factor low > 59
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.54 AO353_00435 transcription-repair coupling factor 0.43 9
Dechlorosoma suillum PS 0.44 Dsui_3092 ATP-dependent DNA helicase RecQ 0.44 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.55 Psest_1653 transcription-repair coupling factor (mfd) 0.48 11
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12700 DNA helicase RecQ 0.50 LRK55_RS01815 transcription-repair coupling factor low > 63
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.54 Psyr_1896 transcription-repair coupling factor low > 86
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.51 ABZR86_RS21210 transcription-repair coupling factor 0.40 26
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.54 Psyr_1896 transcription-repair coupling factor 0.38 30
Agrobacterium fabrum C58 0.44 Atu0061 ATP-dependent DNA helicase 0.31 Atu1778 transcription-repair coupling factor low > 89
Marinobacter adhaerens HP15 0.44 HP15_1718 ATP-dependent DNA helicase RecQ 0.52 HP15_2257 transcription-repair-coupling factor low > 73
Rhizobium sp. OAE497 0.44 ABIE40_RS12745 DNA helicase RecQ 0.31 ABIE40_RS09310 transcription-repair coupling factor low > 107
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.49 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Pseudomonas sp. S08-1 0.43 OH686_20670 ATP-dependent DNA helicase RecQ 0.54 OH686_21990 transcription-repair coupling factor low > 80
Variovorax sp. OAS795 0.43 ABID97_RS03395 DNA helicase RecQ 0.46 ABID97_RS17285 transcription-repair coupling factor low > 91
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.44 RR42_RS07845 transcription-repair coupling factor 0.49 14
Sinorhizobium meliloti 1021 0.42 SMc01566 ATP-dependent DNA helicase 0.32 SMc04450 transcription-repair coupling factor low > 103
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.48 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Magnetospirillum magneticum AMB-1 0.42 AMB_RS21505 DNA helicase RecQ 0.33 AMB_RS12390 transcription-repair coupling factor low > 64
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.46 BPHYT_RS09290 helicase low > 109
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.46 ABZR87_RS13240 transcription-repair coupling factor low > 80
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS28295 DNA helicase RecQ 0.46 QEN71_RS22060 transcription-repair coupling factor low > 153
Paraburkholderia graminis OAS925 0.42 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.46 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Rhodopseudomonas palustris CGA009 0.42 TX73_025080 DNA helicase RecQ 0.33 TX73_013805 transcription-repair coupling factor low > 86
Phaeobacter inhibens DSM 17395 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.32 PGA1_c14920 transcription-repair-coupling factor Mfd low > 62
Azospirillum sp. SherDot2 0.42 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.32 MPMX19_00876 Transcription-repair-coupling factor low > 112
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS07220 DNA helicase RecQ 0.46 RALBFv3_RS01445 transcription-repair coupling factor low > 76
Ralstonia solanacearum UW163 0.41 UW163_RS06400 DNA helicase RecQ 0.46 UW163_RS14755 transcription-repair coupling factor — —
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.46 H281DRAFT_00880 transcription-repair coupling factor — —
Dinoroseobacter shibae DFL-12 0.41 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.32 Dshi_1561 transcription-repair coupling factor (RefSeq) 0.38 20
Ralstonia solanacearum GMI1000 0.41 RS_RS15155 DNA helicase RecQ 0.46 RS_RS08275 transcription-repair coupling factor low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS10025 DNA helicase RecQ 0.45 RPSI07_RS16040 transcription-repair coupling factor low > 81
Castellaniella sp019104865 MT123 0.41 ABCV34_RS07985 DNA helicase RecQ 0.43 ABCV34_RS08660 transcription-repair coupling factor low > 48
Lysobacter sp. OAE881 0.41 ABIE51_RS05145 DNA helicase RecQ 0.50 ABIE51_RS14320 transcription-repair coupling factor low > 62
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.45 Ac3H11_328 Transcription-repair coupling factor low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1958 ATP-dependent DNA helicase RecQ 0.45 GFF4934 Transcription-repair coupling factor low > 90
Variovorax sp. SCN45 0.40 GFF6415 ATP-dependent DNA helicase RecQ 0.46 GFF412 Transcription-repair coupling factor low > 127
Rhodospirillum rubrum S1H 0.40 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.32 Rru_A1726 Transcription-repair coupling factor (NCBI) low > 58
Bosea sp. OAE506 0.40 ABIE41_RS04160 DNA helicase RecQ 0.32 ABIE41_RS15825 transcription-repair coupling factor low > 77
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.32 Ga0059261_0960 transcription-repair coupling factor (mfd) low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS14575 DNA helicase RecQ 0.32 A4249_RS04775 transcription-repair coupling factor low > 48
Bifidobacterium breve UCC2003 0.34 BBR_RS13150 DNA helicase RecQ 0.27 BBR_RS14115 transcription-repair coupling factor low > 34
Caulobacter crescentus NA1000 0.33 CCNA_03578 ATP-dependent DNA helicase recQ 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.45 20
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_03578 ATP-dependent DNA helicase recQ 0.32 CCNA_01920 transcription-repair coupling factor Mfd low > 67

Not shown: 13 genomes with orthologs for b3822 only; 4 genomes with orthologs for b1114 only