| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b2038 | rfbC | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | 1.0 | b0436 | tig | trigger factor (NCBI) | 0.24 | 19 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.63 | GFF3890 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.97 | GFF4352 | | Cell division trigger factor (EC 5.2.1.8) | low | > 78 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_01663 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 1.00 | OHPLBJKB_03237 | | Trigger factor | low | > 73 |
| Ralstonia solanacearum GMI1000 | 0.57 | RS_RS03445 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.36 | RS_RS08640 | | trigger factor | — | — |
| Ralstonia solanacearum PSI07 | 0.57 | RPSI07_RS20600 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.36 | RPSI07_RS16120 | | trigger factor | — | — |
| Pseudomonas simiae WCS417 | 0.57 | PS417_01320 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.51 | PS417_17240 | | trigger factor | — | — |
| Pseudomonas sp. RS175 | 0.56 | PFR28_04892 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.49 | PFR28_01227 | | Trigger factor | — | — |
| Ralstonia solanacearum UW163 | 0.56 | UW163_RS00905 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.35 | UW163_RS14665 | | trigger factor | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.56 | RALBFv3_RS12660 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.35 | RALBFv3_RS01355 | | trigger factor | — | — |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_03120 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | 1.00 | HEPCGN_06955 | tig | trigger factor | — | — |
| Escherichia coli BL21 | 0.56 | ECD_01944 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RmlC) | 1.00 | ECD_00387 | | peptidyl-prolyl cis/trans isomerase (trigger factor) | — | — |
| Acidovorax sp. GW101-3H11 | 0.55 | Ac3H11_1883 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.39 | Ac3H11_934 | | Cell division trigger factor (EC 5.2.1.8) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.55 | Pf1N1B4_1664 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.50 | Pf1N1B4_3944 | | Cell division trigger factor (EC 5.2.1.8) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.55 | AO353_11875 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.50 | AO353_20170 | | trigger factor | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.55 | PfGW456L13_399 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.50 | PfGW456L13_2551 | | Cell division trigger factor (EC 5.2.1.8) | — | — |
| Rahnella sp. WP5 | 0.55 | EX31_RS11510 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.88 | EX31_RS22240 | | trigger factor | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.55 | AO356_10050 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.51 | AO356_01755 | | trigger factor | — | — |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_4264 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.52 | Psest_2288 | | trigger factor | — | — |
| Variovorax sp. SCN45 | 0.54 | GFF6879 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.38 | GFF490 | | Cell division trigger factor (EC 5.2.1.8) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.54 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.51 | Psyr_1746 | | Trigger factor | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.54 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.51 | Psyr_1746 | | Trigger factor | — | — |
| Pseudomonas putida KT2440 | 0.54 | PP_1782 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.50 | PP_2299 | | Trigger factor | low | > 96 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.54 | GFF1840 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.39 | GFF4040 | | Cell division trigger factor (EC 5.2.1.8) | — | — |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS19055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.96 | BWI76_RS06520 | | trigger factor | low | > 92 |
| Escherichia fergusonii Becca | 0.54 | EFB2_01816 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.99 | EFB2_03621 | | Trigger factor | — | — |
| Pseudomonas fluorescens SBW25 | 0.54 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.50 | PFLU_RS19175 | | trigger factor | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.54 | Pf6N2E2_3880 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.51 | Pf6N2E2_2219 | | Cell division trigger factor (EC 5.2.1.8) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.54 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.50 | PFLU_RS19175 | | trigger factor | — | — |
| Variovorax sp. OAS795 | 0.54 | ABID97_RS05675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.39 | ABID97_RS17605 | | trigger factor | — | — |
| Pseudomonas sp. S08-1 | 0.53 | OH686_14370 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.51 | OH686_03650 | | trigger factor | — | — |
| Shewanella loihica PV-4 | 0.53 | Shew_1404 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | 0.65 | Shew_2509 | tig | trigger factor (RefSeq) | low | > 60 |
| Acinetobacter radioresistens SK82 | 0.53 | MPMX26_00453 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.45 | MPMX26_00407 | | Trigger factor | low | > 36 |
| Dechlorosoma suillum PS | 0.52 | Dsui_1951 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.37 | Dsui_2195 | | trigger factor | — | — |
| Erwinia tracheiphila SCR3 | 0.52 | LU632_RS08865 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.87 | LU632_RS18350 | tig | trigger factor | 0.32 | 57 |
| Paraburkholderia sabiae LMG 24235 | 0.52 | QEN71_RS25745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.40 | QEN71_RS21990 | | trigger factor | — | — |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_1382 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | 0.63 | Shewana3_2662 | tig | trigger factor (RefSeq) | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.51 | H281DRAFT_04824 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.39 | H281DRAFT_00895 | | trigger factor | — | — |
| Paraburkholderia graminis OAS925 | 0.51 | ABIE53_001139 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.37 | ABIE53_002114 | | trigger factor | — | — |
| Burkholderia phytofirmans PsJN | 0.51 | BPHYT_RS04275 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.39 | BPHYT_RS09445 | | trigger factor | — | — |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_03559 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.60 | MIT1002_02761 | | Trigger factor | — | — |
| Dickeya dadantii 3937 | 0.51 | DDA3937_RS06745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.87 | DDA3937_RS05635 | | trigger factor | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.51 | RR42_RS15830 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.37 | RR42_RS09015 | | trigger factor | — | — |
| Enterobacter asburiae PDN3 | 0.50 | EX28DRAFT_0520 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.95 | EX28DRAFT_2535 | | trigger factor | — | — |
| Dickeya dianthicola ME23 | 0.50 | DZA65_RS07120 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.86 | DZA65_RS06005 | | trigger factor | low | > 75 |
| Ralstonia sp. UNC404CL21Col | 0.50 | ABZR87_RS08660 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.35 | ABZR87_RS12800 | | trigger factor | low | > 80 |
| Dickeya dianthicola 67-19 | 0.50 | HGI48_RS06765 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.86 | HGI48_RS05680 | | trigger factor | low | > 71 |
| Phocaeicola dorei CL03T12C01 | 0.50 | ABI39_RS11030 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.07 | ABI39_RS02335 | | trigger factor | low | > 72 |
| Fusobacterium nucleatum SB010 | 0.49 | HUW76_01310 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.19 | HUW76_01050 | | trigger factor | — | — |
| Marinobacter adhaerens HP15 | 0.47 | HP15_p187g51 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.48 | HP15_2186 | | trigger factor | low | > 73 |
| Shewanella oneidensis MR-1 | 0.47 | SO3160 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) | 0.63 | SO1793 | tig | trigger factor (NCBI ptt file) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.47 | CCNA_03748 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.23 | CCNA_02042 | | trigger factor chaperone | low | > 67 |
| Caulobacter crescentus NA1000 | 0.47 | CCNA_03748 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.23 | CCNA_02042 | | trigger factor chaperone | low | > 66 |
| Phocaeicola vulgatus CL09T03C04 | 0.46 | HMPREF1058_RS06635 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.07 | HMPREF1058_RS03090 | | trigger factor | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.46 | ABZR86_RS18725 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.32 | ABZR86_RS07335 | | trigger factor | low | > 74 |
| Shewanella amazonensis SB2B | 0.46 | Sama_2237 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | 0.66 | Sama_1223 | tig | trigger factor (RefSeq) | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.46 | DvMF_2692 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | 0.16 | DvMF_0109 | | trigger factor (RefSeq) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_01165 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.31 | OKGIIK_08045 | tig | trigger factor | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS05430 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.32 | LRK55_RS16445 | | trigger factor | — | — |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS02485 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.36 | ABCV34_RS05140 | | trigger factor | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS05675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.32 | LRK54_RS16720 | | trigger factor | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.4484.1 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | 0.29 | Xcc-8004.4049.1 | | Cell division trigger factor (EC 5.2.1.8) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.44 | HSERO_RS22055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.39 | HSERO_RS12920 | | trigger factor | — | — |
| Lysobacter sp. OAE881 | 0.44 | ABIE51_RS15610 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.31 | ABIE51_RS14160 | | trigger factor | — | — |
| Parabacteroides merdae CL09T00C40 | 0.43 | HMPREF1078_RS00700 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.07 | HMPREF1078_RS17055 | | trigger factor | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.43 | CA264_15705 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.07 | CA264_01415 | | trigger factor | — | — |
| Azospirillum sp. SherDot2 | 0.42 | MPMX19_06724 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.27 | MPMX19_01549 | | Trigger factor | — | — |
| Rhodopseudomonas palustris CGA009 | 0.42 | TX73_000610 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.23 | TX73_015360 | | trigger factor | low | > 86 |
| Rhodospirillum rubrum S1H | 0.41 | Rru_B0038 | | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI) | 0.25 | Rru_A1549 | | Trigger factor (NCBI) | low | > 58 |
| Phaeobacter inhibens DSM 17395 | 0.40 | PGA1_65p00250 | | dTDP-4-dehydrorhamnose 3,5-epimerase RfbC | 0.23 | PGA1_c18160 | | trigger factor Tig | — | — |
| Rhizobium sp. OAE497 | 0.40 | ABIE40_RS08675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.23 | ABIE40_RS08600 | | trigger factor | low | > 107 |
| Bosea sp. OAE506 | 0.40 | ABIE41_RS10415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.23 | ABIE41_RS18065 | | trigger factor | low | > 77 |
| Agrobacterium fabrum C58 | 0.39 | Atu4618 | | dTDP-rhamnose-3,5-epimerase | 0.24 | Atu1664 | | trigger factor | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.39 | DVU0698 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) | 0.17 | DVU1334 | tig | trigger factor (TIGR) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.37 | Dshi_4114 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | 0.24 | Dshi_2190 | | trigger factor (RefSeq) | low | > 64 |
| Magnetospirillum magneticum AMB-1 | 0.36 | AMB_RS00250 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.24 | AMB_RS14050 | | trigger factor | — | — |
| Sinorhizobium meliloti 1021 | 0.35 | SM_b21325 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.25 | SMc02050 | | trigger factor | low | > 103 |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS33410 | | dTDP-4-dehydrorhamnose 3 5-epimerase | 0.26 | AZOBR_RS07130 | | trigger factor | low | > 97 |
Not shown: 8 genomes with orthologs for b2038 only; 16 genomes with orthologs for b0436 only