Homologs of Psyr_3958 from Pseudomonas syringae pv. syringae B728a

RNA polymerase, sigma-24 subunit, RpoE
SEED: RNA polymerase sigma-H factor AlgT
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 100 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 100 100
o Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 98 100
o Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 97 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 97 100
o Pseudomonas sp. DMC3 GFF2277 RNA polymerase sigma-H factor cofit 97 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01572 RNA polymerase sigma-H factor cofit 97 100
o Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 97 100
o Pseudomonas orientalis W4I3 QF045_RS09835 RNA polymerase sigma factor RpoE cofit 97 100
o Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 97 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 97 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 97 100
o Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 97 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 97 100
o Pseudomonas sp. SVBP6 COO64_RS16525 rpoE RNA polymerase sigma factor RpoE insig. 97 100
o Pseudomonas sp. BP01 JOY50_RS14665 rpoE RNA polymerase sigma factor RpoE insig. 97 100
o Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 97 100
o Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 94 100
o Pseudomonas segetis P6 MPMX49_01400 RNA polymerase sigma-H factor strong 94 100
o Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 93 100
o Pseudomonas aeruginosa MRSN321 DY961_RS08690 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 90 100
o Pseudomonas aeruginosa PA14 IKLFDK_03265 alginate biosynthesis protein AlgZ/FimS strong 90 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS44160 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 90 100
o Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 69 99
o Shewanella sp. ANA-3 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) no data 69 99
o Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 66 99
o Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 69 97
o Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 66 99
o Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 64 98
o Erwinia amylovora T8 OLJFJH_10215 RNA polymerase sigma factor RpoE strong 65 99
o Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 64 98
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 64 98
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 64 99
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS12005 RNA polymerase sigma factor RpoE no data 63 98
o Serratia liquefaciens MT49 IAI46_19585 RNA polymerase sigma factor RpoE no data 64 99
o Pantoea sp. MT58 IAI47_04850 RNA polymerase sigma factor RpoE no data 64 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS14740 RNA polymerase sigma factor RpoE no data 64 99
o Dickeya dadantii 3937 DDA3937_RS15765 RNA polymerase sigma factor RpoE strong 64 99
o Pectobacterium carotovorum WPP14 HER17_RS05780 RNA polymerase sigma factor RpoE no data 64 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_01235 rpoE RNA polymerase sigma factor RpoE strong 63 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_12485 RNA polymerase sigma factor RpoE no data 63 98
o Enterobacter asburiae PDN3 EX28DRAFT_0072 RNA polymerase sigma factor RpoE no data 64 99
o Enterobacter sp. TBS_079 MPMX20_03444 ECF RNA polymerase sigma-E factor no data 64 99
o Erwinia tracheiphila SCR3 LU632_RS15425 rpoE RNA polymerase sigma factor RpoE strong 63 99
o Rahnella sp. WP5 EX31_RS21800 RNA polymerase sigma factor RpoE no data 63 99
o Shewanella amazonensis SB2B Sama_0874 RNA polymerase sigma factor RpoE (RefSeq) strong 65 99
o Escherichia coli BL21 ECD_02467 RNA polymerase sigma E factor no data 64 99
o Dickeya dianthicola 67-19 HGI48_RS15850 RNA polymerase sigma factor RpoE cofit 64 99
o Dickeya dianthicola ME23 DZA65_RS16930 RNA polymerase sigma factor RpoE strong 64 99
o Escherichia fergusonii Becca EFB2_01323 ECF RNA polymerase sigma-E factor no data 64 99
o Escherichia coli ECOR27 NOLOHH_13050 rpoE RNA polymerase sigma factor RpoE no data 64 99
o Escherichia coli ECOR38 HEPCGN_20520 rpoE RNA polymerase sigma factor RpoE no data 64 99
o Escherichia coli ECRC100 OKFHMN_21375 rpoE RNA polymerase sigma factor RpoE no data 64 99
o Escherichia coli ECRC101 MCAODC_11905 rpoE RNA polymerase sigma factor RpoE no data 64 99
o Escherichia coli ECRC102 NIAGMN_19145 rpoE RNA polymerase sigma factor RpoE no data 64 99
o Escherichia coli ECRC62 BNILDI_11850 rpoE RNA polymerase sigma factor RpoE no data 64 99
o Escherichia coli ECRC98 JDDGAC_25040 rpoE RNA polymerase sigma factor RpoE no data 64 99
o Escherichia coli ECRC99 KEDOAH_06845 rpoE RNA polymerase sigma factor RpoE no data 64 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01134 ECF RNA polymerase sigma-E factor no data 64 99
o Escherichia coli Nissle 1917 ECOLIN_RS14560 RNA polymerase sigma factor RpoE no data 64 99
o Escherichia coli BW25113 b2573 rpoE RNA polymerase, sigma 24 (sigma E) factor (NCBI) no data 64 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2107 RNA polymerase sigma factor RpoE no data 63 99
o Klebsiella michiganensis M5al BWI76_RS21355 RNA polymerase sigma factor RpoE no data 63 99
o Klebsiella pneumoniae MKP103 KDGMDA_28480 RNA polymerase sigma factor RpoE no data 63 99
o Lysobacter sp. OAE881 ABIE51_RS13890 RNA polymerase sigma factor RpoE strong 66 96
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE insig. 62 97
o Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 64 97
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 63 98
o Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 63 98
o Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 63 98
o Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 63 98
o Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 64 98
o Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 62 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 61 98
o Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 62 98
o Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 62 98
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 62 97
o Methylophilus sp. DMC18 GFF2730 RNA polymerase sigma-H factor no data 62 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 61 98
o Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE strong 60 99
  Marinobacter adhaerens HP15 HP15_775 RNA polymerase sigma-70 RpoE type insig. 58 98
o Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 54 97
o Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 54 96
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3339 RNA polymerase sigma factor RpoE cofit 51 94
o Variovorax sp. SCN45 GFF3863 RNA polymerase sigma factor RpoE insig. 53 96
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 35 96
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 34 94
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 38 92
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 33 92
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS19220 sigma-70 family RNA polymerase sigma factor insig. 32 98
  Lysobacter sp. OAE881 ABIE51_RS16295 sigma-70 family RNA polymerase sigma factor insig. 36 90
  Paraburkholderia sabiae LMG 24235 QEN71_RS18240 RNA polymerase sigma factor insig. 31 94
o Synechocystis sp000284455 PCC 6803 SGL_RS06480 sigma-70 family RNA polymerase sigma factor no data 36 94
o Synechococcus elongatus PCC 7942 Synpcc7942_1923 sigG RNA polymerase sigma factor RpoE strong 36 95
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15190 RNA polymerase sigma factor insig. 31 94
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01799 RNA polymerase sigma-70 factor, ECF subfamily insig. 34 89
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_00665 RNA polymerase subunit sigma-24 strong 32 87
  Xanthobacter sp. DMC5 GFF1190 ECF RNA polymerase sigma factor SigR insig. 43 73
o Bacteroides ovatus ATCC 8483 BACOVA_00669 Sigma-70 region 2 insig. 35 96
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 31 96