Homologs of PP_4720 from Pseudomonas putida KT2440

putative RNA binding protein
SEED: FIG004454: RNA binding protein
KEGG: RNA-binding protein

91 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_4720 putative RNA binding protein strong 100 100
o Pseudomonas sp. BP01 JOY50_RS26780 YhbY family RNA-binding protein insig. 98 100
o Pseudomonas sp. SVBP6 COO64_RS15225 yhbY ribosome assembly RNA-binding protein YhbY insig. 96 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1169 FIG004454: RNA binding protein no data 75 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5096 FIG004454: RNA binding protein strong 73 100
o Pseudomonas sp. RS175 PFR28_00080 RNA-binding protein YhbY no data 74 100
o Pseudomonas fluorescens FW300-N2E3 AO353_05615 RNA-binding protein no data 74 100
o Pseudomonas stutzeri RCH2 Psest_0971 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein no data 73 100
o Pseudomonas syringae pv. syringae B728a Psyr_4189 Protein of unknown function UPF0044 no data 76 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4189 Protein of unknown function UPF0044 insig. 76 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3361 FIG004454: RNA binding protein no data 72 100
o Pseudomonas fluorescens SBW25 PFLU_RS25865 YhbY family RNA-binding protein cofit 72 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS25865 YhbY family RNA-binding protein strong 72 100
o Pseudomonas sp. DMC3 GFF4980 RNA-binding protein cofit 72 100
o Pseudomonas simiae WCS417 PS417_24025 RNA-binding protein no data 72 100
o Pseudomonas fluorescens FW300-N2C3 AO356_07465 RNA-binding protein no data 72 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04955 RNA-binding protein no data 71 100
o Pseudomonas orientalis W4I3 QF045_RS26280 YhbY family RNA-binding protein insig. 70 100
o Pseudomonas sp. S08-1 OH686_17095 RNA-binding protein YhbY insig. 72 100
o Pseudomonas segetis P6 ACVTMO_RS05900 yhbY ribosome assembly RNA-binding protein YhbY insig. 68 100
o Pseudomonas aeruginosa MRSN321 DY961_RS09520 yhbY;go_component=cytoplasm|0005737||IEA;go_function=RNA ribosome assembly RNA-binding protein YhbY strong 66 99
o Pseudomonas aeruginosa PA14 IKLFDK_29830 ribosome assembly RNA-binding protein YhbY sig. 66 99
o Pseudomonas aeruginosa PUPa3 DQ20_RS52515 yhbY;go_component=cytoplasm|0005737||IEA;go_function=RNA ribosome assembly RNA-binding protein YhbY insig. 66 99
o Marinobacter adhaerens HP15 HP15_3075 RNA-binding, CRM domain, prokaryote insig. 56 100
o Acinetobacter radioresistens SK82 MPMX26_00770 RNA-binding protein insig. 49 98
o Acinetobacter baumannii LAC-4 RR41_RS04175 ribosome assembly RNA-binding protein YhbY insig. 48 98
o Klebsiella pneumoniae MKP103 KDGMDA_05970 ribosome assembly RNA-binding protein YhbY insig. 47 94
o Pantoea sp. MT58 IAI47_17075 ribosome assembly RNA-binding protein YhbY insig. 49 84
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09170 ribosome assembly RNA-binding protein YhbY insig. 49 84
o Erwinia amylovora T8 OLJFJH_07190 ribosome assembly RNA-binding protein YhbY insig. 49 84
o Vibrio cholerae E7946 ATCC 55056 CSW01_03335 ribosome assembly RNA-binding protein YhbY insig. 47 88
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13870 yhbY ribosome assembly RNA-binding protein YhbY insig. 47 84
o Erwinia tracheiphila SCR3 LU632_RS21115 yhbY ribosome assembly RNA-binding protein YhbY insig. 47 84
o Pectobacterium carotovorum WPP14 HER17_RS18325 ribosome assembly RNA-binding protein YhbY no data 45 84
o Shewanella sp. ANA-3 Shewana3_1021 hypothetical protein (RefSeq) cofit 43 88
o Shewanella oneidensis MR-1 SO1195 conserved hypothetical protein TIGR00253 (NCBI ptt file) no data 43 88
o Alteromonas macleodii MIT1002 MIT1002_01863 RNA-binding protein insig. 43 93
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2921 FIG004454: RNA binding protein insig. 45 94
o Klebsiella michiganensis M5al BWI76_RS25155 RNA-binding protein no data 45 94
o Dickeya dadantii 3937 DDA3937_RS03020 ribosome assembly RNA-binding protein YhbY insig. 45 86
o Dickeya dianthicola 67-19 HGI48_RS03190 ribosome assembly RNA-binding protein YhbY insig. 45 86
o Dickeya dianthicola ME23 DZA65_RS03185 ribosome assembly RNA-binding protein YhbY insig. 45 86
o Escherichia fergusonii Becca EFB2_00643 RNA-binding protein YhbY insig. 44 94
o Rahnella sp. WP5 EX31_RS08590 ribosome assembly RNA-binding protein YhbY insig. 43 91
o Serratia liquefaciens MT49 IAI46_01885 ribosome assembly RNA-binding protein YhbY cofit 45 94
o Escherichia coli BL21 ECD_03045 RNA binding protein sig. 44 94
o Escherichia coli ECOR27 NOLOHH_09850 yhbY ribosome assembly RNA-binding protein YhbY insig. 44 94
o Escherichia coli ECOR38 HEPCGN_16925 yhbY ribosome assembly RNA-binding protein YhbY insig. 44 94
o Escherichia coli ECRC100 OKFHMN_18050 yhbY ribosome assembly RNA-binding protein YhbY cofit 44 94
o Escherichia coli ECRC101 MCAODC_08570 yhbY ribosome assembly RNA-binding protein YhbY sig. 44 94
o Escherichia coli ECRC102 NIAGMN_15810 yhbY ribosome assembly RNA-binding protein YhbY insig. 44 94
o Escherichia coli ECRC62 BNILDI_01685 yhbY ribosome assembly RNA-binding protein YhbY cofit 44 94
o Escherichia coli ECRC98 JDDGAC_21675 yhbY ribosome assembly RNA-binding protein YhbY insig. 44 94
o Escherichia coli ECRC99 KEDOAH_10100 yhbY ribosome assembly RNA-binding protein YhbY no data 44 94
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00520 RNA-binding protein YhbY sig. 44 94
o Escherichia coli Nissle 1917 ECOLIN_RS18315 ribosome assembly RNA-binding protein YhbY cofit 44 94
o Escherichia coli BW25113 b3180 yhbY predicted RNA-binding protein (NCBI) strong 44 94
o Shewanella amazonensis SB2B Sama_0952 RNA-binding protein (RefSeq) insig. 43 86
o Shewanella loihica PV-4 Shew_2836 hypothetical protein (RefSeq) no data 42 88
o Enterobacter asburiae PDN3 EX28DRAFT_3231 putative RNA-binding protein, YhbY family cofit 44 94
o Enterobacter sp. TBS_079 MPMX20_04084 RNA-binding protein YhbY insig. 44 94
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS06570 ribosome assembly RNA-binding protein YhbY sig. 42 86
o Kangiella aquimarina DSM 16071 B158DRAFT_0633 putative RNA-binding protein, YhbY family sig. 43 87
  Dechlorosoma suillum PS Dsui_3061 putative RNA-binding protein, YhbY family insig. 40 84
  Ralstonia sp. UNC404CL21Col ABZR87_RS14125 YhbY family RNA-binding protein sig. 39 85
  Ralstonia solanacearum PSI07 RPSI07_RS15270 RNA-binding protein insig. 39 85
o Lysobacter sp. OAE881 ABIE51_RS06515 ribosome assembly RNA-binding protein YhbY insig. 42 82
  Cupriavidus basilensis FW507-4G11 RR42_RS13495 RNA-binding protein no data 36 81
  Ralstonia solanacearum GMI1000 RS_RS07645 RNA-binding protein insig. 36 87
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS02175 RNA-binding protein no data 35 87
  Ralstonia solanacearum UW163 UW163_RS15485 RNA-binding protein insig. 35 87
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3126.1 FIG004454: RNA binding protein no data 41 90
o Methylophilus sp. DMC18 GFF315 RNA-binding protein insig. 36 86
  Castellaniella sp019104865 MT123 ABCV34_RS15545 ribosome assembly RNA-binding protein YhbY insig. 34 84
o Rhodanobacter sp. FW510-T8 OKGIIK_08090 yhbY ribosome assembly RNA-binding protein YhbY no data 36 86
o Rhodanobacter denitrificans MT42 LRK55_RS16400 ribosome assembly RNA-binding protein YhbY insig. 35 86
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS16675 ribosome assembly RNA-binding protein YhbY insig. 35 86
  Paraburkholderia sabiae LMG 24235 QEN71_RS04795 YhbY family RNA-binding protein strong 37 84
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS12245 ribosome assembly RNA-binding protein YhbY sig. 35 86
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04406 putative RNA-binding protein, YhbY family sig. 35 84
  Paraburkholderia graminis OAS925 ABIE53_003001 RNA-binding protein insig. 35 82
  Burkholderia phytofirmans PsJN BPHYT_RS14175 RNA-binding protein cofit 35 84
  Herbaspirillum seropedicae SmR1 HSERO_RS06935 RNA-binding protein insig. 36 88
  Variovorax sp. OAS795 ABID97_RS17055 YhbY family RNA-binding protein cofit 35 86
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4215 FIG004454: RNA binding protein no data 33 89
o Fusobacterium nucleatum SB010 HUW76_04210 ribosome assembly RNA-binding protein YhbY cofit 27 86
  Bifidobacterium breve UCC2003 BBR_RS17295 RNA-binding protein sig. 30 90
  Acidovorax sp. GW101-3H11 Ac3H11_440 FIG004454: RNA binding protein no data 38 68
  Variovorax sp. SCN45 GFF371 RNA-binding protein YhbY insig. 38 71
  Methanococcus maripaludis JJ MMJJ_RS04610 ribosome assembly RNA-binding protein YhbY sig. 28 84
  Methanococcus maripaludis S2 MMP_RS00880 ribosome assembly RNA-binding protein YhbY sig. 28 84