Homologs of PP_0165 from Pseudomonas putida KT2440

GGDEF domain protein
SEED: Membrane bound c-di-GMP receptor LapD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_0165 GGDEF domain protein strong 100 100
o Pseudomonas sp. BP01 JOY50_RS28180 lapD cyclic di-GMP receptor LapD no data 97 100
o Pseudomonas sp. SVBP6 COO64_RS26435 lapD cyclic di-GMP receptor LapD cofit 84 100
o Pseudomonas sp. RS175 PFR28_04783 hypothetical protein strong 78 100
o Pseudomonas fluorescens FW300-N2C3 AO356_10580 hypothetical protein cofit 78 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD strong 78 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00514 RNase E specificity factor CsrD cofit 76 100
o Pseudomonas sp. DMC3 GFF4286 hypothetical protein cofit 76 100
o Pseudomonas fluorescens FW300-N2E3 AO353_11170 hypothetical protein strong 76 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD insig. 76 100
o Pseudomonas orientalis W4I3 QF045_RS03595 EAL domain-containing protein cofit 75 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD insig. 76 100
o Pseudomonas segetis P6 ACVTMO_RS14575 lapD cyclic di-GMP receptor LapD insig. 57 100
o Pseudomonas sp. S08-1 OH686_20650 Membrane bound c-di-GMP receptor LapD insig. 58 100
o Pseudomonas aeruginosa MRSN321 DY961_RS05745 EAL domain-containing protein insig. 60 100
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3529 Membrane bound c-di-GMP receptor LapD insig. 58 100
o Pectobacterium carotovorum WPP14 HER17_RS05880 EAL domain-containing protein cofit 57 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS47045 EAL domain-containing protein insig. 61 100
o Pseudomonas aeruginosa PA14 IKLFDK_06810 Diguanylate cyclase/phosphodiesterase insig. 60 100
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4428 Membrane bound c-di-GMP receptor LapD insig. 57 99
  Pseudomonas fluorescens FW300-N2E3 AO353_18415 hypothetical protein insig. 56 100
o Pseudomonas stutzeri RCH2 Psest_1864 diguanylate cyclase (GGDEF) domain insig. 55 100
o Acidovorax sp. GW101-3H11 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD insig. 35 98
o Alteromonas macleodii MIT1002 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr insig. 29 100
o Marinobacter adhaerens HP15 HP15_3218 diguanylate cyclase/phosphodiesterase insig. 32 96
o Methylophilus sp. DMC18 GFF459 hypothetical protein insig. 27 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_19490 GGDEF domain-containing protein cofit 25 99
o Shewanella oneidensis MR-1 SO4323 GGDEF domain protein (NCBI ptt file) cofit 27 98
o Shewanella loihica PV-4 Shew_0307 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 26 96
o Shewanella sp. ANA-3 Shewana3_0376 diguanylate cyclase/phosphodiesterase (RefSeq) sig. 26 99
o Shewanella amazonensis SB2B Sama_3264 putative diguanylate phosphodiesterase (RefSeq) sig. 26 98
  Alteromonas macleodii MIT1002 MIT1002_01559 Cyclic di-GMP phosphodiesterase YfgF insig. 23 100
  Shewanella sp. ANA-3 Shewana3_2167 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 25 74
  Shewanella oneidensis MR-1 SO2507 GGDEF domain protein (NCBI ptt file) insig. 24 76
  Shewanella loihica PV-4 Shew_2065 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 25 77
  Pseudomonas sp. S08-1 OH686_21075 Sensory box/GGDEF family protein insig. 30 64
  Rhodospirillum rubrum S1H Rru_A2763 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) insig. 32 66
  Shewanella amazonensis SB2B Sama_1829 putative diguanylate phosphodiesterase (RefSeq) insig. 26 73
  Pseudomonas aeruginosa PUPa3 DQ20_RS44635 EAL domain-containing protein insig. 28 74
  Pseudomonas aeruginosa MRSN321 DY961_RS22900 EAL domain-containing protein insig. 31 64
  Pseudomonas aeruginosa PUPa3 DQ20_RS36445 EAL domain-containing protein insig. 31 64
  Pseudomonas aeruginosa MRSN321 DY961_RS08185 EAL domain-containing protein sig. 28 74
  Agrobacterium fabrum C58 Atu3495 diguanylate cyclase sig. 26 69
  Pseudomonas aeruginosa PA14 IKLFDK_03805 PAS domain S-box protein insig. 28 74
  Pseudomonas sp. S08-1 OH686_11905 hypothetical protein insig. 31 68
  Acidovorax sp. GW101-3H11 Ac3H11_4120 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 29 65
  Shewanella amazonensis SB2B Sama_0449 regulatory protein CsrD (RefSeq) sig. 25 76
  Pseudomonas aeruginosa PA14 IKLFDK_22535 bifunctional diguanylate cyclase/phosphodiesterase insig. 30 64
  Magnetospirillum magneticum AMB-1 AMB_RS03740 signal transduction protein insig. 28 73
  Magnetospirillum magneticum AMB-1 AMB_RS18310 bifunctional diguanylate cyclase/phosphodiesterase cofit 28 66
  Rhodanobacter denitrificans MT42 LRK55_RS10715 EAL domain-containing protein insig. 30 69
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11010 EAL domain-containing protein insig. 30 69
  Dechlorosoma suillum PS Dsui_1565 diguanylate cyclase (GGDEF) domain-containing protein cofit 29 68
  Pseudomonas syringae pv. syringae B728a Psyr_2711 diguanylate cyclase/phosphodiesterase insig. 29 65
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2711 diguanylate cyclase/phosphodiesterase insig. 29 65
  Klebsiella pneumoniae MKP103 KDGMDA_25960 GGDEF-domain containing protein insig. 25 70
  Shewanella oneidensis MR-1 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) strong 26 76
  Paraburkholderia graminis OAS925 ABIE53_001117 diguanylate cyclase (GGDEF)-like protein insig. 29 65
  Pseudomonas syringae pv. syringae B728a Psyr_3942 diguanylate cyclase/phosphodiesterase insig. 26 76
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3942 diguanylate cyclase/phosphodiesterase insig. 26 76
  Marinobacter adhaerens HP15 HP15_215 sensory box/GGDEF family protein insig. 28 63
  Pseudomonas fluorescens FW300-N2E3 AO353_07390 diguanylate cyclase insig. 28 68
  Pseudomonas fluorescens SBW25 PFLU_RS27540 bifunctional diguanylate cyclase/phosphodiesterase insig. 29 68
  Pseudomonas fluorescens SBW25-INTG PFLU_RS27540 bifunctional diguanylate cyclase/phosphodiesterase insig. 29 68
  Pseudomonas sp. SVBP6 COO64_RS06790 EAL domain-containing protein cofit 28 65
  Shewanella sp. ANA-3 Shewana3_3668 regulatory protein CsrD (RefSeq) sig. 26 76
  Acidovorax sp. GW101-3H11 Ac3H11_4268 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 29 66
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS04560 EAL domain-containing protein insig. 29 68
  Pseudomonas putida KT2440 PP_1761 diguanylate cyclase with phosphodiesterase domain strong 29 65
  Acidovorax sp. GW101-3H11 Ac3H11_2218 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 30 64
  Agrobacterium fabrum C58 Atu3244 diguanylate cyclase insig. 27 77
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS03860 EAL domain-containing protein insig. 31 69
  Methylophilus sp. DMC18 GFF2168 hypothetical protein insig. 26 74
  Acidovorax sp. GW101-3H11 Ac3H11_2258 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 30 65
  Rhizobium sp. OAE497 ABIE40_RS00480 EAL domain-containing protein insig. 27 65
  Bosea sp. OAE506 ABIE41_RS24040 EAL domain-containing protein strong 27 65
  Pseudomonas sp. RS175 PFR28_00896 hypothetical protein insig. 28 65
  Pseudomonas syringae pv. syringae B728a Psyr_1159 PAS:GGDEF insig. 26 66
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1159 PAS:GGDEF insig. 26 66
  Rhodanobacter sp. FW510-T8 OKGIIK_01360 Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain insig. 29 68
  Pseudomonas sp. BP01 JOY50_RS16180 EAL domain-containing protein insig. 29 65
  Shewanella oneidensis MR-1 SO1500 sensory box protein (NCBI ptt file) strong 28 66
  Paraburkholderia graminis OAS925 ABIE53_004138 diguanylate cyclase (GGDEF)-like protein sig. 29 63
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2166 Sensory box/GGDEF family protein insig. 29 65
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2889.1 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 26 67
  Pseudomonas sp. S08-1 OH686_09725 Sensory box/GGDEF family protein cofit 29 65
  Dechlorosoma suillum PS Dsui_0760 diguanylate cyclase (GGDEF) domain-containing protein cofit 29 65
  Variovorax sp. SCN45 GFF3184 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 28 65
  Shewanella amazonensis SB2B Sama_2973 GGDEF domain-containing protein (RefSeq) insig. 28 65
  Pseudomonas fluorescens SBW25 PFLU_RS05360 GGDEF and EAL domain-containing protein insig. 26 86
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05360 GGDEF and EAL domain-containing protein insig. 26 86
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4790 sensory box/GGDEF domain/EAL domain protein sig. 30 64
  Pseudomonas fluorescens FW300-N2C3 AO356_14260 diguanylate cyclase insig. 30 64
  Bosea sp. OAE506 ABIE41_RS10320 EAL domain-containing protein insig. 29 66
  Pseudomonas simiae WCS417 PS417_25885 diguanylate cyclase insig. 29 68
  Shewanella amazonensis SB2B Sama_0388 putative diguanylate phosphodiesterase (RefSeq) strong 28 67
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05297 Membrane-bound lytic murein transglycosylase F cofit 28 68
  Rhodanobacter denitrificans MT42 LRK55_RS10355 EAL domain-containing protein insig. 30 72
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS10715 EAL domain-containing protein insig. 30 72
  Pseudomonas syringae pv. syringae B728a Psyr_3655 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) cofit 28 65