Homologs of yhbY from Erwinia tracheiphila SCR3

yhbY: ribosome assembly RNA-binding protein YhbY
SEED: FIG004454: RNA binding protein
KEGG: RNA-binding protein

91 hits from BLASTp (E < 0.01)

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Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Erwinia tracheiphila SCR3	LU632_RS21115	yhbY	ribosome assembly RNA-binding protein YhbY	insig.	100	100
o	Erwinia tracheiphila HP pepo 2.2	IJEDHG_13870	yhbY	ribosome assembly RNA-binding protein YhbY	insig.	99	100
o	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF2921		FIG004454: RNA binding protein	insig.	92	100
o	Klebsiella michiganensis M5al	BWI76_RS25155		RNA-binding protein	no data	91	100
o	Escherichia coli BL21	ECD_03045		RNA binding protein	sig.	90	100
o	Escherichia coli ECOR27	NOLOHH_09850	yhbY	ribosome assembly RNA-binding protein YhbY	insig.	90	100
o	Escherichia coli ECOR38	HEPCGN_16925	yhbY	ribosome assembly RNA-binding protein YhbY	insig.	90	100
o	Escherichia coli ECRC100	OKFHMN_18050	yhbY	ribosome assembly RNA-binding protein YhbY	cofit	90	100
o	Escherichia coli ECRC101	MCAODC_08570	yhbY	ribosome assembly RNA-binding protein YhbY	sig.	90	100
o	Escherichia coli ECRC102	NIAGMN_15810	yhbY	ribosome assembly RNA-binding protein YhbY	insig.	90	100
o	Escherichia coli ECRC62	BNILDI_01685	yhbY	ribosome assembly RNA-binding protein YhbY	cofit	90	100
o	Escherichia coli ECRC98	JDDGAC_21675	yhbY	ribosome assembly RNA-binding protein YhbY	insig.	90	100
o	Escherichia coli ECRC99	KEDOAH_10100	yhbY	ribosome assembly RNA-binding protein YhbY	no data	90	100
o	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_00520		RNA-binding protein YhbY	sig.	90	100
o	Escherichia coli Nissle 1917	ECOLIN_RS18315		ribosome assembly RNA-binding protein YhbY	cofit	90	100
o	Erwinia amylovora T8	OLJFJH_07190		ribosome assembly RNA-binding protein YhbY	insig.	90	100
o	Escherichia coli BW25113	b3180	yhbY	predicted RNA-binding protein (NCBI)	strong	90	100
o	Enterobacter asburiae PDN3	EX28DRAFT_3231		putative RNA-binding protein, YhbY family	cofit	89	100
o	Enterobacter sp. TBS_079	MPMX20_04084		RNA-binding protein YhbY	insig.	89	100
o	Escherichia fergusonii Becca	EFB2_00643		RNA-binding protein YhbY	insig.	90	100
o	Pantoea agglomerans CFBP13505 P0401	PagCFBP13505_RS09170		ribosome assembly RNA-binding protein YhbY	insig.	89	100
o	Pantoea sp. MT58	IAI47_17075		ribosome assembly RNA-binding protein YhbY	insig.	89	100
o	Klebsiella pneumoniae MKP103	KDGMDA_05970		ribosome assembly RNA-binding protein YhbY	insig.	89	100
o	Serratia liquefaciens MT49	IAI46_01885		ribosome assembly RNA-binding protein YhbY	cofit	87	100
o	Dickeya dadantii 3937	DDA3937_RS03020		ribosome assembly RNA-binding protein YhbY	insig.	88	100
o	Dickeya dianthicola 67-19	HGI48_RS03190		ribosome assembly RNA-binding protein YhbY	insig.	88	100
o	Dickeya dianthicola ME23	DZA65_RS03185		ribosome assembly RNA-binding protein YhbY	insig.	88	100
o	Pectobacterium carotovorum WPP14	HER17_RS18325		ribosome assembly RNA-binding protein YhbY	no data	86	100
o	Rahnella sp. WP5	EX31_RS08590		ribosome assembly RNA-binding protein YhbY	insig.	81	100
o	Vibrio cholerae E7946 ATCC 55056	CSW01_03335		ribosome assembly RNA-binding protein YhbY	insig.	76	100
o	Shewanella amazonensis SB2B	Sama_0952		RNA-binding protein (RefSeq)	insig.	72	100
o	Shewanella oneidensis MR-1	SO1195		conserved hypothetical protein TIGR00253 (NCBI ptt file)	no data	71	100
o	Alteromonas macleodii MIT1002	MIT1002_01863		RNA-binding protein	insig.	69	100
o	Shewanella sp. ANA-3	Shewana3_1021		hypothetical protein (RefSeq)	cofit	71	100
o	Shewanella loihica PV-4	Shew_2836		hypothetical protein (RefSeq)	no data	70	100
o	Kangiella aquimarina DSM 16071	B158DRAFT_0633		putative RNA-binding protein, YhbY family	sig.	54	98
o	Lysobacter sp. OAE881	ABIE51_RS06515		ribosome assembly RNA-binding protein YhbY	insig.	50	98
o	Pseudomonas segetis P6	ACVTMO_RS05900	yhbY	ribosome assembly RNA-binding protein YhbY	insig.	49	89
o	Acinetobacter radioresistens SK82	MPMX26_00770		RNA-binding protein	insig.	51	89
o	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.3126.1		FIG004454: RNA binding protein	no data	48	98
o	Methylophilus sp. DMC18	GFF315		RNA-binding protein	insig.	48	100
o	Acinetobacter baumannii LAC-4	RR41_RS04175		ribosome assembly RNA-binding protein YhbY	insig.	51	89
o	Marinobacter adhaerens HP15	HP15_3075		RNA-binding, CRM domain, prokaryote	insig.	46	92
o	Dyella japonica UNC79MFTsu3.2	ABZR86_RS06570		ribosome assembly RNA-binding protein YhbY	sig.	46	100
o	Pseudomonas lactucae CFBP13502	GEMAOFIL_04955		RNA-binding protein	no data	50	89
o	Pseudomonas fluorescens FW300-N2E3	AO353_05615		RNA-binding protein	no data	48	89
o	Pseudomonas fluorescens SBW25	PFLU_RS25865		YhbY family RNA-binding protein	cofit	49	89
o	Pseudomonas fluorescens SBW25-INTG	PFLU_RS25865		YhbY family RNA-binding protein	strong	49	89
o	Pseudomonas simiae WCS417	PS417_24025		RNA-binding protein	no data	49	89
o	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_1169		FIG004454: RNA binding protein	no data	48	89
o	Pseudomonas aeruginosa MRSN321	DY961_RS09520	yhbY;go_component=cytoplasm\|0005737\|\|IEA;go_function=RNA	ribosome assembly RNA-binding protein YhbY	strong	47	89
o	Pseudomonas aeruginosa PA14	IKLFDK_29830		ribosome assembly RNA-binding protein YhbY	sig.	47	89
o	Pseudomonas aeruginosa PUPa3	DQ20_RS52515	yhbY;go_component=cytoplasm\|0005737\|\|IEA;go_function=RNA	ribosome assembly RNA-binding protein YhbY	insig.	47	89
	Dechlorosoma suillum PS	Dsui_3061		putative RNA-binding protein, YhbY family	insig.	45	91
o	Pseudomonas syringae pv. syringae B728a	Psyr_4189		Protein of unknown function UPF0044	no data	48	89
o	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_4189		Protein of unknown function UPF0044	insig.	48	89
o	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_3361		FIG004454: RNA binding protein	no data	49	89
o	Pseudomonas sp. RS175	PFR28_00080		RNA-binding protein YhbY	no data	48	89
	Castellaniella sp019104865 MT123	ABCV34_RS15545		ribosome assembly RNA-binding protein YhbY	insig.	44	90
o	Pseudomonas fluorescens GW456-L13	PfGW456L13_5096		FIG004454: RNA binding protein	strong	48	89
	Herbaspirillum seropedicae SmR1	HSERO_RS06935		RNA-binding protein	insig.	47	93
o	Pseudomonas fluorescens FW300-N2C3	AO356_07465		RNA-binding protein	no data	49	89
o	Pseudomonas sp. SVBP6	COO64_RS15225	yhbY	ribosome assembly RNA-binding protein YhbY	insig.	48	89
o	Rhodanobacter sp000427505 FW510-R12	LRK53_RS12245		ribosome assembly RNA-binding protein YhbY	sig.	47	100
o	Pseudomonas orientalis W4I3	QF045_RS26280		YhbY family RNA-binding protein	insig.	49	89
o	Pseudomonas sp. S08-1	OH686_17095		RNA-binding protein YhbY	insig.	47	89
o	Pseudomonas sp. DMC3	GFF4980		RNA-binding protein	cofit	48	89
o	Pseudomonas sp. BP01	JOY50_RS26780		YhbY family RNA-binding protein	insig.	47	89
o	Pseudomonas putida KT2440	PP_4720		putative RNA binding protein	strong	47	89
	Cupriavidus basilensis FW507-4G11	RR42_RS13495		RNA-binding protein	no data	46	84
	Paraburkholderia sabiae LMG 24235	QEN71_RS04795		YhbY family RNA-binding protein	strong	45	92
o	Rhodanobacter denitrificans MT42	LRK55_RS16400		ribosome assembly RNA-binding protein YhbY	insig.	44	100
o	Rhodanobacter denitrificans FW104-10B01	LRK54_RS16675		ribosome assembly RNA-binding protein YhbY	insig.	44	100
o	Rhodanobacter sp. FW510-T8	OKGIIK_08090	yhbY	ribosome assembly RNA-binding protein YhbY	no data	45	100
	Paraburkholderia graminis OAS925	ABIE53_003001		RNA-binding protein	insig.	44	90
	Ralstonia sp. UNC404CL21Col	ABZR87_RS14125		YhbY family RNA-binding protein	sig.	44	89
	Ralstonia solanacearum IBSBF1503	RALBFv3_RS02175		RNA-binding protein	no data	44	89
	Ralstonia solanacearum GMI1000	RS_RS07645		RNA-binding protein	insig.	44	89
	Ralstonia solanacearum UW163	UW163_RS15485		RNA-binding protein	insig.	44	89
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_04406		putative RNA-binding protein, YhbY family	sig.	44	90
	Ralstonia solanacearum PSI07	RPSI07_RS15270		RNA-binding protein	insig.	44	89
o	Pseudomonas stutzeri RCH2	Psest_0971		Predicted RNA-binding protein containing KH domain, possibly ribosomal protein	no data	42	89
	Burkholderia phytofirmans PsJN	BPHYT_RS14175		RNA-binding protein	cofit	43	90
	Variovorax sp. OAS795	ABID97_RS17055		YhbY family RNA-binding protein	cofit	43	78
	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF4215		FIG004454: RNA binding protein	no data	37	93
	Acidovorax sp. GW101-3H11	Ac3H11_440		FIG004454: RNA binding protein	no data	46	69
	Variovorax sp. SCN45	GFF371		RNA-binding protein YhbY	insig.	40	70
o	Fusobacterium nucleatum SB010	HUW76_04210		ribosome assembly RNA-binding protein YhbY	cofit	33	92
o	Bifidobacterium breve UCC2003	BBR_RS17295		RNA-binding protein	sig.	33	91
	Methanococcus maripaludis JJ	MMJJ_RS04610		ribosome assembly RNA-binding protein YhbY	sig.	31	94
	Methanococcus maripaludis S2	MMP_RS00880		ribosome assembly RNA-binding protein YhbY	sig.	31	94