Homologs of HSERO_RS12085 from Herbaspirillum seropedicae SmR1

RNA polymerase sigma-E factor protein
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Herbaspirillum seropedicae SmR1 HSERO_RS12085 RNA polymerase sigma-E factor protein insig. 100 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS04785 sigma-70 family RNA polymerase sigma factor insig. 43 96
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS05195 sigma-70 family RNA polymerase sigma factor insig. 43 92
o Rhodanobacter denitrificans MT42 LRK55_RS04975 sigma-70 family RNA polymerase sigma factor cofit 43 92
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS00445 sigma-70 family RNA polymerase sigma factor insig. 43 92
o Rhodanobacter sp. FW510-T8 OKGIIK_14780 RNA polymerase subunit sigma-70 insig. 43 92
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3183.1 RNA polymerase sigma factor RpoE insig. 40 92
o Bosea sp. OAE506 ABIE41_RS07610 sigma-70 family RNA polymerase sigma factor insig. 35 94
o Rhodopseudomonas palustris CGA009 TX73_009355 sigma-70 family RNA polymerase sigma factor insig. 37 91
  Rhodopseudomonas palustris CGA009 TX73_002850 sigma-70 family RNA polymerase sigma factor insig. 35 99
  Rhodopseudomonas palustris CGA009 TX73_024905 sigma-70 family RNA polymerase sigma factor insig. 34 90
o Pseudomonas sp. S08-1 OH686_11525 hypothetical protein cofit 35 90
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 33 94
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 33 94
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 33 94
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 33 94
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 34 88
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 33 94
o Dinoroseobacter shibae DFL-12 Dshi_3423 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 32 95
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 33 88
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 33 88
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 33 88
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 33 88
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 33 88
  Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 33 89
o Rhizobium sp. OAE497 ABIE40_RS26955 sigma-70 family RNA polymerase sigma factor insig. 33 88
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 32 92
  Variovorax sp. SCN45 GFF3863 RNA polymerase sigma factor RpoE insig. 31 89
  Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 33 96
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS12005 RNA polymerase sigma factor RpoE cofit 33 98
  Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 32 90
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 32 90
  Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 32 94
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07040 RNA polymerase sigma factor insig. 34 92
o Bifidobacterium breve UCC2003 BBR_RS15930 RNA polymerase sigma factor insig. 34 96
o Azospirillum brasilense Sp245 AZOBR_RS00810 RNA polymerase sigma factor RpoE insig. 31 84
o Azospirillum sp. SherDot2 MPMX19_05229 ECF RNA polymerase sigma factor RpoE insig. 30 95
o Enterobacter asburiae PDN3 EX28DRAFT_2390 RNA polymerase sigma factor, sigma-70 family cofit 32 93
o Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 33 88
  Methylophilus sp. DMC18 GFF2730 RNA polymerase sigma-H factor no data 29 98
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS05845 sigma-70 family RNA polymerase sigma factor insig. 34 90
  Rhizobium sp. OAE497 ABIE40_RS01975 sigma-70 family RNA polymerase sigma factor insig. 32 83
  Variovorax sp. OAS795 ABID97_RS21865 sigma-70 family RNA polymerase sigma factor insig. 30 97
  Vibrio cholerae E7946 ATCC 55056 CSW01_12485 RNA polymerase sigma factor RpoE no data 29 88
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE insig. 30 91
  Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 29 91
  Lysobacter sp. OAE881 ABIE51_RS13890 RNA polymerase sigma factor RpoE strong 30 91
  Pseudomonas sp. BP01 JOY50_RS14665 rpoE RNA polymerase sigma factor RpoE insig. 28 91
  Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 28 91
o Bacteroides ovatus ATCC 8483 BACOVA_05174 RNA polymerase sigma-70 factor insig. 31 91
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11515 RNA polymerase sigma-70 factor insig. 29 93
  Pseudomonas sp. SVBP6 COO64_RS16525 rpoE RNA polymerase sigma factor RpoE insig. 28 91
  Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE cofit 31 89
  Azospirillum sp. SherDot2 MPMX19_02022 ECF RNA polymerase sigma factor RpoE insig. 27 96
  Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 30 91
  Dickeya dianthicola 67-19 HGI48_RS15850 RNA polymerase sigma factor RpoE cofit 29 88
  Dickeya dianthicola ME23 DZA65_RS16930 RNA polymerase sigma factor RpoE strong 29 88
  Klebsiella michiganensis M5al BWI76_RS21355 RNA polymerase sigma factor RpoE no data 29 88
  Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 27 91
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 27 91
  Pseudomonas sp. DMC3 GFF2277 RNA polymerase sigma-H factor cofit 27 91
  Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 27 91
  Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 27 91
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 27 91
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 27 91
  Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 27 91
  Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 27 91
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 27 91
  Synechocystis sp000284455 PCC 6803 SGL_RS08165 sigma-70 family RNA polymerase sigma factor strong 30 98
  Shewanella amazonensis SB2B Sama_2611 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 30 97
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 28 96
  Marinobacter adhaerens HP15 HP15_775 RNA polymerase sigma-70 RpoE type insig. 30 89
  Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 29 91
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 29 91
  Pseudomonas aeruginosa PA14 IKLFDK_03265 alginate biosynthesis protein AlgZ/FimS insig. 28 91
  Marinobacter adhaerens HP15 HP15_p187g100 RNA polymerase sigma factor insig. 28 86
  Shewanella sp. ANA-3 Shewana3_2465 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 31 89
  Dickeya dadantii 3937 DDA3937_RS15765 RNA polymerase sigma factor RpoE strong 29 88
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3339 RNA polymerase sigma factor RpoE cofit 29 88
  Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 28 91
  Rhizobium sp. OAE497 ABIE40_RS18210 sigma-70 family RNA polymerase sigma factor insig. 32 87
  Dinoroseobacter shibae DFL-12 Dshi_2428 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 29 90
  Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 26 91
o Caulobacter crescentus NA1000 CCNA_00685 RNA polymerase sigma factor sig. 28 90
o Caulobacter crescentus NA1000 Δfur CCNA_00685 RNA polymerase sigma factor cofit 28 90
  Vibrio cholerae E7946 ATCC 55056 CSW01_11715 RNA polymerase subunit sigma insig. 29 99
  Marinobacter adhaerens HP15 HP15_950 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 29 91
  Erwinia tracheiphila SCR3 LU632_RS15425 rpoE RNA polymerase sigma factor RpoE strong 30 88
  Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 29 95
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 29 95
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 29 89
  Azospirillum sp. SherDot2 MPMX19_05742 hypothetical protein insig. 32 90
o Shewanella oneidensis MR-1 SO1986 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 30 91
  Enterobacter asburiae PDN3 EX28DRAFT_0072 RNA polymerase sigma factor RpoE no data 29 88
  Enterobacter sp. TBS_079 MPMX20_03444 ECF RNA polymerase sigma-E factor no data 29 88
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2107 RNA polymerase sigma factor RpoE no data 29 88
  Erwinia amylovora T8 OLJFJH_10215 RNA polymerase sigma factor RpoE strong 28 88
  Escherichia coli BL21 ECD_02467 RNA polymerase sigma E factor no data 29 88
  Escherichia fergusonii Becca EFB2_01323 ECF RNA polymerase sigma-E factor no data 29 88
  Escherichia coli ECOR27 NOLOHH_13050 rpoE RNA polymerase sigma factor RpoE no data 29 88