Homologs of HMPREF1078_RS17690 from Parabacteroides merdae CL09T00C40

S4 domain-containing protein
SEED: Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70)

114 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS17690 S4 domain-containing protein sig. 100 100
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08930 hypothetical protein insig. 71 24
  Vibrio cholerae E7946 ATCC 55056 CSW01_11335 23S rRNA pseudouridine(2604) synthase RluF insig. 52 34
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08925 23S rRNA pseudouridine synthase F insig. 69 24
  Alteromonas macleodii MIT1002 MIT1002_01776 Ribosomal large subunit pseudouridine synthase F insig. 65 24
  Lysobacter sp. OAE881 ABIE51_RS12720 pseudouridine synthase insig. 63 25
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11165 pseudouridine synthase no data 50 27
  Cellulophaga baltica 18 M666_RS18620 23S rRNA pseudouridine(2604) synthase RluF insig. 51 32
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS19110 23S rRNA pseudouridine synthase F insig. 55 26
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1362 Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70) insig. 60 22
  Escherichia coli ECOR27 NOLOHH_05365 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 59 23
  Klebsiella michiganensis M5al BWI76_RS01755 23S rRNA pseudouridine synthase F insig. 58 22
  Klebsiella pneumoniae MKP103 KDGMDA_10215 23S rRNA pseudouridine(2604) synthase RluF insig. 58 22
  Klebsiella pneumoniae MRSN742743 GJGHJB_04730 rluF 23S rRNA pseudouridine(2604) synthase RluF sig. 58 22
  Acidovorax sp. GW101-3H11 Ac3H11_4641 tRNA pseudouridine synthase A (EC 4.2.1.70) sig. 54 25
  Marinobacter adhaerens HP15 HP15_886 pseudouridine synthase family 1 protein insig. 54 24
  Escherichia coli BL21 ECD_03894 23S rRNA pseudouridine(2604) synthase insig. 57 23
  Escherichia fergusonii Becca EFB2_04580 Dual-specificity RNA pseudouridine synthase RluF insig. 57 23
  Escherichia coli ECOR38 HEPCGN_11820 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 57 23
  Escherichia coli ECRC100 OKFHMN_13190 rluF 23S rRNA pseudouridine(2604) synthase RluF cofit 57 23
  Escherichia coli ECRC101 MCAODC_03690 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 57 23
  Escherichia coli ECRC102 NIAGMN_10940 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 57 23
  Escherichia coli ECRC62 BNILDI_06155 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 57 23
  Escherichia coli ECRC98 JDDGAC_16815 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 57 23
  Escherichia coli ECRC99 KEDOAH_14970 rluF 23S rRNA pseudouridine(2604) synthase RluF no data 57 23
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04027 23S rRNA pseudouridine(2604) synthase insig. 57 23
  Escherichia coli Nissle 1917 ECOLIN_RS23225 23S rRNA pseudouridine(2604) synthase RluF insig. 57 23
  Escherichia coli BW25113 b4022 yjbC 23S rRNA pseudouridine synthase (NCBI) sig. 57 23
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1843.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) insig. 55 25
  Rahnella sp. WP5 EX31_RS06075 23S rRNA pseudouridine(2604) synthase RluF insig. 54 23
  Enterobacter asburiae PDN3 EX28DRAFT_4322 pseudouridine synthase insig. 56 22
  Enterobacter sp. TBS_079 MPMX20_00237 Dual-specificity RNA pseudouridine synthase RluF insig. 56 22
  Fusobacterium nucleatum SB010 HUW76_04625 rRNA pseudouridine synthase cofit 45 29
  Pantoea sp. MT58 IAI47_19435 23S rRNA pseudouridine(2604) synthase RluF insig. 56 22
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1010 pseudouridine synthase insig. 54 23
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS01375 pseudouridine synthase insig. 53 24
  Erwinia amylovora T8 OLJFJH_05535 23S rRNA pseudouridine(2604) synthase RluF sig. 52 23
  Bacteroides thetaiotaomicron VPI-5482 BT3872 ribosomal large subunit pseudouridine synthase B (NCBI ptt file) no data 45 27
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS19615 rluF 23S rRNA pseudouridine(2604) synthase RluF cofit 56 22
  Serratia liquefaciens MT49 IAI46_21130 23S rRNA pseudouridine(2604) synthase RluF insig. 53 22
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_08325 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 56 22
  Erwinia tracheiphila SCR3 LU632_RS22175 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 56 22
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS16400 pseudouridine synthase cofit 53 24
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS00420 pseudouridine synthase no data 43 29
  Phocaeicola dorei CL03T12C01 ABI39_RS08040 pseudouridine synthase no data 43 29
  Bacteroides stercoris CC31F HMPREF1181_RS07005 pseudouridine synthase no data 45 27
  Rhodanobacter sp. FW510-T8 OKGIIK_16610 Pseudouridine synthase insig. 51 24
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0719 pseudouridine synthase no data 51 24
  Rhodanobacter denitrificans MT42 LRK55_RS06765 pseudouridine synthase insig. 49 24
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07025 pseudouridine synthase insig. 49 24
  Kangiella aquimarina DSM 16071 B158DRAFT_2311 ribosomal large subunit pseudouridine synthase B (EC 5.4.99.-) strong 44 28
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF343 tRNA pseudouridine synthase A (EC 4.2.1.70) cofit 45 32
  Variovorax sp. OAS795 ABID97_RS00980 pseudouridine synthase strong 51 24
  Methylophilus sp. DMC18 GFF891 hypothetical protein insig. 48 24
  Magnetospirillum magneticum AMB-1 AMB_RS20865 rRNA pseudouridine synthase cofit 49 26
  Cellulophaga baltica 18 M666_RS02705 pseudouridine synthase no data 50 24
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17510 pseudouridylate synthase strong 49 24
  Serratia liquefaciens MT49 IAI46_19150 23S rRNA pseudouridine(2604) synthase RluF insig. 49 24
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS25065 pseudouridylate synthase no data 50 23
  Variovorax sp. SCN45 GFF3530 Pseudouridine synthase insig. 49 24
  Paraburkholderia graminis OAS925 ABIE53_002509 23S rRNA pseudouridine2604 synthase insig. 56 20
  Paraburkholderia sabiae LMG 24235 QEN71_RS23115 pseudouridine synthase no data 38 26
  Herbaspirillum seropedicae SmR1 HSERO_RS18010 pseudouridine synthase strong 40 28
  Synechococcus elongatus PCC 7942 Synpcc7942_1010 ribosomal large subunit pseudouridine synthase B strong 46 20
  Burkholderia phytofirmans PsJN BPHYT_RS12155 RNA-binding protein S4 insig. 54 20
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18660 pseudouridine synthase no data 50 23
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15665 rRNA pseudouridine synthase no data 39 27
  Ralstonia solanacearum UW163 UW163_RS13125 rRNA pseudouridine synthase no data 39 27
  Rhodopseudomonas palustris CGA009 TX73_005980 pseudouridine synthase insig. 45 24
  Dechlorosoma suillum PS Dsui_2759 pseudouridine synthase family protein insig. 43 24
  Pseudomonas stutzeri RCH2 Psest_1999 pseudouridine synthase insig. 42 24
  Ralstonia solanacearum GMI1000 RS_RS06445 23S rRNA pseudouridylate synthase B strong 39 27
  Ralstonia solanacearum PSI07 RPSI07_RS17690 23S rRNA pseudouridylate synthase B strong 39 27
  Desulfovibrio vulgaris Miyazaki F DvMF_0369 pseudouridine synthase (RefSeq) sig. 59 17
  Cupriavidus basilensis FW507-4G11 RR42_RS12860 pseudouridine synthase strong 42 24
  Pseudomonas aeruginosa MRSN321 PFGADD_01789 rluB 23S rRNA pseudouridine(2605) synthase RluB strong 40 26
  Pseudomonas aeruginosa PA14 IKLFDK_16155 23S rRNA pseudouridine(2605) synthase RluB strong 40 26
  Pseudomonas aeruginosa PUPa3 NPBIFN_01825 rluB 23S rRNA pseudouridine(2605) synthase RluB strong 40 26
  Ralstonia sp. UNC404CL21Col ABZR87_RS11195 pseudouridine synthase strong 39 27
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS02135 pseudouridine synthase insig. 37 32
  Methylophilus sp. DMC18 GFF2067 hypothetical protein insig. 59 16
  Dinoroseobacter shibae DFL-12 Dshi_2790 RNA-binding S4 domain protein (RefSeq) insig. 43 26
  Pseudomonas segetis P6 ACVTMO_RS14420 rluB 23S rRNA pseudouridine(2605) synthase RluB insig. 43 26
  Dechlorosoma suillum PS Dsui_2725 pseudouridine synthase family protein no data 40 27
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS07850 pseudouridine synthase insig. 39 25
  Castellaniella sp019104865 MT123 ABCV34_RS03070 pseudouridine synthase insig. 61 15
  Azospirillum brasilense Sp245 AZOBR_RS04495 ribosomal large subunit pseudouridine synthase B strong 43 24
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05101 ribosomal large subunit pseudouridine synthase B (EC 5.4.99.-) no data 34 26
  Rhodanobacter denitrificans MT42 LRK55_RS00590 pseudouridine synthase no data 33 30
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00815 pseudouridine synthase strong 33 30
  Rhodospirillum rubrum S1H Rru_A0652 Pseudouridine synthase, Rsu (NCBI) cofit 60 15
  Burkholderia phytofirmans PsJN BPHYT_RS08050 pseudouridine synthase no data 34 26
  Paraburkholderia graminis OAS925 ABIE53_001827 23S rRNA pseudouridine2605 synthase no data 34 26
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09315 pseudouridine synthase insig. 31 40
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4868 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) cofit 30 27
  Alteromonas macleodii MIT1002 MIT1002_01435 Ribosomal large subunit pseudouridine synthase B cofit 39 25
  Caulobacter crescentus NA1000 CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 40 24
  Caulobacter crescentus NA1000 Δfur CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 40 24
  Lysobacter sp. OAE881 ABIE51_RS08775 pseudouridine synthase sig. 42 27
  Castellaniella sp019104865 MT123 ABCV34_RS02110 23S rRNA pseudouridine(2605) synthase RluB no data 40 24
  Azospirillum sp. SherDot2 MPMX19_01627 hypothetical protein insig. 45 24
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2356.1 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) strong 39 25
  Rhodanobacter sp. FW510-T8 OKGIIK_06425 Pseudouridine synthase sig. 34 30
  Synechocystis sp000284455 PCC 6803 SGL_RS12865 pseudouridine synthase strong 42 28
  Xanthobacter sp. DMC5 GFF108 hypothetical protein insig. 45 24
  Desulfovibrio vulgaris Hildenborough JW710 DVU1669 rluB ribosomal large subunit pseudouridine synthase B (TIGR) insig. 49 21
  Marinobacter adhaerens HP15 HP15_1530 RNA-binding S4 domain protein sig. 39 27
  Acinetobacter baumannii LAC-4 RR41_RS15215 23S rRNA pseudouridine(2605) synthase RluB cofit 37 28
  Pseudomonas sp. S08-1 OH686_20820 LSU rRNA pseudouridine(2605) synthase cofit 38 24
  Acinetobacter radioresistens SK82 MPMX26_02450 Ribosomal large subunit pseudouridine synthase B strong 37 28
  Mycobacterium tuberculosis H37Rv Rv1711 Conserved hypothetical protein no data 36 29
  Rhizobium sp. OAE497 ABIE40_RS03760 pseudouridine synthase sig. 41 26
  Paraburkholderia sabiae LMG 24235 QEN71_RS06405 pseudouridine synthase cofit 70 11
  Herbaspirillum seropedicae SmR1 HSERO_RS10860 RNA pseudouridylate synthase insig. 68 12