Homologs of HMPREF1078_RS06240 from Parabacteroides merdae CL09T00C40

TIGR00730 family Rossman fold protein
SEED: Lysine decarboxylase family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06240 TIGR00730 family Rossman fold protein insig. 100 100
o Bacteroides ovatus ATCC 8483 BACOVA_02921 TIGR00730 family protein insig. 68 97
o Bacteroides thetaiotaomicron VPI-5482 BT3224 putative lysine decarboxylase (NCBI ptt file) strong 68 97
o Bacteroides stercoris CC31F HMPREF1181_RS01670 TIGR00730 family Rossman fold protein insig. 73 97
o Phocaeicola dorei CL03T12C01 ABI39_RS05550 TIGR00730 family Rossman fold protein insig. 67 97
o Pseudomonas putida KT2440 PP_4871 putative lysine decarboxylase family protein sig. 51 86
o Pseudomonas fluorescens GW456-L13 PfGW456L13_132 Lysine decarboxylase family insig. 52 85
o Pseudomonas sp. RS175 PFR28_05145 'Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase' transl_table=11 insig. 51 85
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3589 Lysine decarboxylase family insig. 52 84
o Burkholderia phytofirmans PsJN BPHYT_RS06500 LOG family protein insig. 45 92
o Paraburkholderia graminis OAS925 ABIE53_001565 uncharacterized protein (TIGR00730 family) sig. 44 92
o Paraburkholderia sabiae LMG 24235 QEN71_RS24290 TIGR00730 family Rossman fold protein insig. 47 87
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1389 Lysine decarboxylase family insig. 50 85
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04542 hypothetical protein insig. 43 92
o Pseudomonas fluorescens FW300-N2C3 AO356_08535 LOG family protein insig. 51 84
o Dechlorosoma suillum PS Dsui_0979 TIGR00730 family protein sig. 50 85
o Pseudomonas sp. S08-1 OH686_16655 Lysine decarboxylase family insig. 49 86
o Cupriavidus basilensis FW507-4G11 RR42_RS05385 LOG family protein insig. 48 85
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS03100 TIGR00730 family Rossman fold protein insig. 47 90
o Ralstonia solanacearum UW163 UW163_RS10625 TIGR00730 family Rossman fold protein insig. 47 90
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3415.1 Lysine decarboxylase family insig. 48 84
o Ralstonia solanacearum PSI07 RPSI07_RS14205 TIGR00730 family Rossman fold protein insig. 48 85
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4273 Lysine decarboxylase family cofit 46 84
o Ralstonia sp. UNC404CL21Col ABZR87_RS15005 TIGR00730 family Rossman fold protein insig. 46 90
o Ralstonia solanacearum GMI1000 RS_RS10470 TIGR00730 family Rossman fold protein insig. 46 90
o Pseudomonas fluorescens FW300-N2E3 AO353_13300 LOG family protein cofit 48 86
o Rhodanobacter denitrificans MT42 LRK55_RS00740 TIGR00730 family Rossman fold protein insig. 47 81
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS00965 TIGR00730 family Rossman fold protein insig. 47 81
o Azospirillum brasilense Sp245 AZOBR_RS14105 LOG family protein insig. 47 83
o Rhodanobacter sp. FW510-T8 OKGIIK_05925 TIGR00730 family Rossman fold protein insig. 47 81
o Pseudomonas stutzeri RCH2 Psest_3243 TIGR00730 family protein sig. 45 88
  Azospirillum brasilense Sp245 AZOBR_RS10990 lysine decarboxylase insig. 48 89
o Lysobacter sp. OAE881 ABIE51_RS08970 TIGR00730 family Rossman fold protein insig. 48 82
  Serratia liquefaciens MT49 IAI46_14285 TIGR00730 family Rossman fold protein insig. 48 78
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_15135 TIGR00730 family Rossman fold protein insig. 43 81
o Magnetospirillum magneticum AMB-1 AMB_RS14390 TIGR00730 family Rossman fold protein no data 48 89
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS05935 TIGR00730 family Rossman fold protein insig. 46 81
o Herbaspirillum seropedicae SmR1 HSERO_RS16435 LOG family protein insig. 42 87
o Marinobacter adhaerens HP15 HP15_3835 conserved hypothetical protein insig. 46 84
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10665 Rossman fold protein, TIGR00730 family insig. 45 82
o Bosea sp. OAE506 ABIE41_RS21595 TIGR00730 family Rossman fold protein insig. 44 85
o Dickeya dadantii 3937 DDA3937_RS17825 TIGR00730 family Rossman fold protein insig. 42 84
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS10320 TIGR00730 family Rossman fold protein insig. 39 88
o Azospirillum sp. SherDot2 MPMX19_06138 Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase insig. 45 96
o Rhizobium sp. OAE497 ABIE40_RS06210 TIGR00730 family Rossman fold protein insig. 41 83
o Sinorhizobium meliloti 1021 SMc02544 hypothetical protein insig. 41 83
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2416 TIGR00730 family protein cofit 39 91
o Rhodopseudomonas palustris CGA009 TX73_010330 TIGR00730 family Rossman fold protein insig. 44 81
o Agrobacterium fabrum C58 Atu1066 hypothetical protein insig. 41 83
  Acinetobacter radioresistens SK82 MPMX26_02735 Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase insig. 41 81
o Dickeya dianthicola 67-19 HGI48_RS17765 TIGR00730 family Rossman fold protein insig. 43 84
o Dickeya dianthicola ME23 DZA65_RS18910 TIGR00730 family Rossman fold protein insig. 43 84
o Rhodospirillum rubrum S1H Rru_A0357 hypothetical protein (NCBI) cofit 46 89
  Fusobacterium nucleatum SB010 HUW76_07415 TIGR00730 family Rossman fold protein strong 40 78
  Acinetobacter radioresistens SK82 MPMX26_00134 Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase insig. 43 81
o Acidovorax sp. GW101-3H11 Ac3H11_519 Lysine decarboxylase family insig. 45 86
  Bosea sp. OAE506 ABIE41_RS01645 TIGR00730 family Rossman fold protein insig. 39 91
o Variovorax sp. OAS795 ABID97_RS14855 TIGR00730 family Rossman fold protein insig. 39 91
  Variovorax sp. SCN45 GFF1152 Lysine decarboxylase family insig. 42 79
  Dinoroseobacter shibae DFL-12 Dshi_1767 hypothetical protein (RefSeq) insig. 41 77
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0909 TIGR00730 family protein insig. 37 86
o Phaeobacter inhibens DSM 17395 PGA1_c19080 TIGR00730 family protein insig. 45 87
o Desulfovibrio vulgaris Miyazaki F DvMF_1885 hypothetical protein (RefSeq) insig. 39 87
o Caulobacter crescentus NA1000 CCNA_01372 lysine decarboxylase family strong 36 98
o Caulobacter crescentus NA1000 Δfur CCNA_01372 lysine decarboxylase family cofit 36 98
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08515 TIGR00730 family Rossman fold protein cofit 39 88
o Castellaniella sp019104865 MT123 ABCV34_RS10940 TIGR00730 family Rossman fold protein insig. 39 84
  Mycobacterium tuberculosis H37Rv Rv1205 Conserved hypothetical protein strong 39 78
  Bacteroides ovatus ATCC 8483 BACOVA_00911 TIGR00730 family protein insig. 27 86
  Phocaeicola dorei CL03T12C01 ABI39_RS05115 TIGR00730 family Rossman fold protein insig. 30 88
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11790 TIGR00730 family Rossman fold protein sig. 30 88
  Bacteroides thetaiotaomicron VPI-5482 BT3307 lysine decarboxylase (NCBI ptt file) no data 29 77
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS10705 TIGR00730 family Rossman fold protein no data 34 88
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS04970 Rossman fold protein, TIGR00730 family strong 31 87
  Bifidobacterium breve UCC2003 BBR_RS14545 TIGR00730 family Rossman fold protein insig. 30 86
  Bosea sp. OAE506 ABIE41_RS22580 TIGR00730 family Rossman fold protein insig. 28 91
  Desulfovibrio vulgaris Miyazaki F DvMF_0170 hypothetical protein (RefSeq) insig. 31 86
  Ralstonia sp. UNC404CL21Col ABZR87_RS15685 TIGR00730 family Rossman fold protein strong 30 73
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06023 hypothetical protein strong 29 74
  Burkholderia phytofirmans PsJN BPHYT_RS33615 decarboxylase insig. 29 74
  Paraburkholderia graminis OAS925 ABIE53_004851 uncharacterized protein (TIGR00730 family) strong 29 74
  Dechlorosoma suillum PS Dsui_0458 TIGR00730 family protein strong 26 88
  Cupriavidus basilensis FW507-4G11 RR42_RS15055 hypothetical protein strong 30 73
  Ralstonia solanacearum PSI07 RPSI07_RS13475 TIGR00730 family Rossman fold protein cofit 29 73
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1206 TIGR00730 family protein strong 27 87
  Herbaspirillum seropedicae SmR1 HSERO_RS02255 decarboxylase strong 27 87
  Castellaniella sp019104865 MT123 ABCV34_RS02190 TIGR00730 family Rossman fold protein cofit 30 60
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_18115 Rossman fold protein, TIGR00730 family no data 31 65
  Paraburkholderia sabiae LMG 24235 QEN71_RS17880 TIGR00730 family Rossman fold protein strong 32 60
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS03755 TIGR00730 family Rossman fold protein cofit 28 73
  Ralstonia solanacearum GMI1000 RS_RS11200 TIGR00730 family Rossman fold protein cofit 28 73
  Ralstonia solanacearum UW163 UW163_RS09915 TIGR00730 family Rossman fold protein insig. 28 73
  Desulfovibrio vulgaris Hildenborough JW710 DVU1529 decarboxylase family protein (TIGR) insig. 30 78
  Pseudomonas syringae pv. syringae B728a Psyr_1380 Conserved hypothetical protein 730 insig. 29 87
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1380 Conserved hypothetical protein 730 insig. 29 87
  Pseudomonas fluorescens SBW25 PFLU_RS05895 TIGR00730 family Rossman fold protein insig. 30 88
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05895 TIGR00730 family Rossman fold protein insig. 30 88
  Pseudomonas simiae WCS417 PS417_05825 cytochrome D ubiquinol oxidase subunit II sig. 29 87
  Caulobacter crescentus NA1000 CCNA_00853 3-isopropylmalate dehydrogenase strong 33 44
  Caulobacter crescentus NA1000 Δfur CCNA_00853 3-isopropylmalate dehydrogenase cofit 33 44