Homologs of GFF4525 from Xanthobacter sp. DMC5

Regulator of RpoS
SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthobacter sp. DMC5 GFF4525 Regulator of RpoS insig. 100 100
o Magnetospirillum magneticum AMB-1 AMB_RS10945 diguanylate phosphodiesterase insig. 33 88
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1770.1 hypothetical protein insig. 34 80
  Magnetospirillum magneticum AMB-1 AMB_RS16740 diguanylate phosphodiesterase insig. 32 87
  Pseudomonas sp. SVBP6 COO64_RS26085 EAL domain-containing protein insig. 32 77
o Pseudomonas aeruginosa PA14 IKLFDK_00990 diguanylate phosphodiesterase insig. 30 90
  Rhodospirillum rubrum S1H Rru_A3494 Putative diguanylate phosphodiesterase (EAL domain) with Response Regulator Receiver modulation (NCBI) insig. 31 81
  Pseudomonas sp. RS175 PFR28_01497 Sensor histidine kinase RcsC insig. 32 78
  Herbaspirillum seropedicae SmR1 HSERO_RS03135 diguanylate cyclase sig. 30 79
  Pseudomonas simiae WCS417 PS417_16935 diguanylate phosphodiesterase insig. 31 80
  Pseudomonas fluorescens FW300-N2E3 AO353_18200 diguanylate phosphodiesterase insig. 31 78
  Pseudomonas fluorescens SBW25 PFLU_RS07895 EAL domain-containing protein insig. 30 90
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07895 EAL domain-containing protein sig. 30 90
  Cupriavidus basilensis FW507-4G11 RR42_RS09710 hypothetical protein insig. 31 77
  Synechocystis sp000284455 PCC 6803 SGL_RS17625 EAL domain-containing protein strong 27 89
  Alteromonas macleodii MIT1002 MIT1002_04215 Bacteriophytochrome cph2 insig. 29 90
  Pectobacterium carotovorum WPP14 HER17_RS09670 EAL domain-containing protein cofit 37 52
  Pseudomonas fluorescens SBW25 PFLU_RS05360 GGDEF and EAL domain-containing protein insig. 35 59
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05360 GGDEF and EAL domain-containing protein insig. 35 59
o Shewanella amazonensis SB2B Sama_2580 putative diguanylate phosphodiesterase (RefSeq) insig. 29 90
  Herbaspirillum seropedicae SmR1 HSERO_RS13550 diguanylate phosphodiesterase insig. 33 56
  Shewanella oneidensis MR-1 SO2539 response regulator (NCBI ptt file) insig. 33 56
  Pseudomonas sp. RS175 PFR28_02059 Oxygen sensor protein DosP insig. 35 56
  Pseudomonas putida KT2440 PP_3182 GGDEF domain protein insig. 31 70
  Methylophilus sp. DMC18 GFF1835 Regulator of RpoS cofit 27 90
  Pseudomonas simiae WCS417 PS417_05295 DeoR faimly transcriptional regulator insig. 36 56
  Vibrio cholerae E7946 ATCC 55056 CSW01_08305 diguanylate phosphodiesterase insig. 27 79
  Paraburkholderia sabiae LMG 24235 QEN71_RS10745 EAL domain-containing protein insig. 33 54
  Shewanella amazonensis SB2B Sama_0809 putative diguanylate phosphodiesterase (RefSeq) insig. 28 89
  Pseudomonas fluorescens FW300-N2E3 AO353_14025 diguanylate phosphodiesterase strong 32 62
  Pseudomonas sp. RS175 PFR28_03785 hypothetical protein insig. 32 62
  Vibrio cholerae E7946 ATCC 55056 CSW01_03440 bifunctional diguanylate cyclase/phosphodiesterase insig. 32 57
  Pseudomonas syringae pv. syringae B728a Psyr_3942 diguanylate cyclase/phosphodiesterase insig. 32 56
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3942 diguanylate cyclase/phosphodiesterase insig. 32 56
  Pseudomonas fluorescens FW300-N2C3 AO356_15730 diguanylate phosphodiesterase insig. 32 62
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5083 Serine hydroxymethyltransferase (EC 2.1.2.1) sig. 32 62
  Ralstonia solanacearum GMI1000 RS_RS24900 EAL domain-containing protein insig. 31 72
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01257 hypothetical protein cofit 35 56
  Pseudomonas sp. DMC3 GFF3964 hypothetical protein insig. 31 62
  Pseudomonas sp. SVBP6 COO64_RS03000 EAL domain-containing protein insig. 31 62
  Pseudomonas sp. BP01 JOY50_RS26645 bifunctional diguanylate cyclase/phosphodiesterase insig. 30 70
  Magnetospirillum magneticum AMB-1 AMB_RS06165 CBS domain-containing protein insig. 34 57
  Ralstonia sp. UNC404CL21Col ABZR87_RS04535 EAL domain-containing protein insig. 29 89
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2779 Serine hydroxymethyltransferase (EC 2.1.2.1) insig. 31 62
  Pseudomonas sp. RS175 PFR28_04522 hypothetical protein insig. 35 64
  Burkholderia phytofirmans PsJN BPHYT_RS27880 diguanylate phosphodiesterase insig. 31 74
  Pseudomonas aeruginosa MRSN321 DY961_RS13125 rocR;inference=COORDINATES two-component system response regulator cyclic di-GMP-specific phosphodiesterase RocR insig. 28 77
  Pseudomonas aeruginosa PA14 IKLFDK_20360 two-component system response regulator cyclic di-GMP-specific phosphodiesterase RocR insig. 28 77
  Pseudomonas aeruginosa PUPa3 DQ20_RS48445 rocR;inference=COORDINATES two-component system response regulator cyclic di-GMP-specific phosphodiesterase RocR insig. 28 77
  Pseudomonas fluorescens SBW25 PFLU_RS05370 EAL domain-containing protein insig. 34 53
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05370 EAL domain-containing protein insig. 34 53
  Pseudomonas sp. SVBP6 COO64_RS04950 EAL domain-containing protein insig. 28 81
  Pseudomonas sp. BP01 JOY50_RS24630 bifunctional diguanylate cyclase/phosphodiesterase insig. 34 54
  Pseudomonas putida KT2440 PP_0672 Sensory box protein sig. 34 54
  Paraburkholderia sabiae LMG 24235 QEN71_RS10895 cyclic di-GMP phosphodiesterase strong 33 56
  Desulfovibrio vulgaris Hildenborough JW710 DVU2432 sensory box/GGDEF domain/EAL domain protein (TIGR) insig. 35 58
  Pseudomonas sp. DMC3 GFF511 hypothetical protein cofit 32 64
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS16030 histidine kinase insig. 31 70
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1452 Serine hydroxymethyltransferase (EC 2.1.2.1) insig. 31 62
  Cupriavidus basilensis FW507-4G11 RR42_RS10855 diguanylate phosphodiesterase insig. 30 77
  Rhodopseudomonas palustris CGA009 TX73_002700 bifunctional diguanylate cyclase/phosphodiesterase insig. 33 56
  Agrobacterium fabrum C58 Atu3495 diguanylate cyclase sig. 32 57
  Paraburkholderia sabiae LMG 24235 QEN71_RS12220 GGDEF and EAL domain-containing protein insig. 31 60
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03092 Protein-glutamate methylesterase/protein-glutamine glutaminase cofit 28 89
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2007 Sensory box/GGDEF family protein insig. 33 63
  Pseudomonas syringae pv. syringae B728a Psyr_4265 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 31 62
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4265 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 31 62
  Dechlorosoma suillum PS Dsui_0983 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein insig. 36 52
  Klebsiella pneumoniae MKP103 KDGMDA_25960 GGDEF-domain containing protein insig. 32 53
  Pseudomonas orientalis W4I3 QF045_RS26570 EAL domain-containing protein insig. 30 62
  Pseudomonas simiae WCS417 PS417_24275 diguanylate phosphodiesterase strong 30 62
  Acidovorax sp. GW101-3H11 Ac3H11_4670 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 32 54
  Desulfovibrio vulgaris Miyazaki F DvMF_2963 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) insig. 34 56
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04630 PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein insig. 33 52
  Marinobacter adhaerens HP15 HP15_1415 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) insig. 32 63
  Herbaspirillum seropedicae SmR1 HSERO_RS08500 hypothetical protein insig. 30 68
  Shewanella amazonensis SB2B Sama_3115 putative diguanylate phosphodiesterase (RefSeq) insig. 30 59
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4868 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 28 71
  Pseudomonas sp. S08-1 OH686_16235 Sensory box/GGDEF family protein insig. 32 57
  Lysobacter sp. OAE881 ABIE51_RS17335 EAL domain-containing protein insig. 31 61
  Shewanella sp. ANA-3 Shewana3_3829 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) cofit 31 59
  Pseudomonas sp. SVBP6 COO64_RS26040 EAL domain-containing protein insig. 27 79
  Acidovorax sp. GW101-3H11 Ac3H11_2218 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 33 55
  Synechocystis sp000284455 PCC 6803 SGL_RS11260 EAL domain-containing protein cofit 32 54
  Pseudomonas fluorescens SBW25 PFLU_RS15265 EAL domain-containing response regulator insig. 30 87
  Pseudomonas fluorescens SBW25-INTG PFLU_RS15265 EAL domain-containing response regulator insig. 30 87
  Pseudomonas stutzeri RCH2 Psest_4097 PAS domain S-box/diguanylate cyclase (GGDEF) domain strong 32 60
  Klebsiella michiganensis M5al BWI76_RS18710 GGDEF-domain containing protein strong 31 53
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1728 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 29 70
  Shewanella loihica PV-4 Shew_0813 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) insig. 35 53
  Pseudomonas fluorescens GW456-L13 PfGW456L13_725 Sensory box/GGDEF family protein insig. 34 60
  Pectobacterium carotovorum WPP14 HER17_RS11575 EAL domain-containing protein cofit 33 55
  Variovorax sp. SCN45 GFF1448 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) sig. 31 65
  Pseudomonas fluorescens SBW25 PFLU_RS26190 bifunctional diguanylate cyclase/phosphodiesterase cofit 30 62
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26190 bifunctional diguanylate cyclase/phosphodiesterase sig. 30 62
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05007 hypothetical protein cofit 30 62
  Ralstonia solanacearum PSI07 RPSI07_RS07605 histidine kinase insig. 30 70
  Pseudomonas aeruginosa MRSN321 DY961_RS23425 morA;inference=COORDINATES cyclic di-GMP receptor MorA insig. 32 56
  Pseudomonas aeruginosa PA14 IKLFDK_00505 cyclic di-GMP receptor MorA insig. 32 56
  Pseudomonas aeruginosa PUPa3 DQ20_RS55890 morA;inference=COORDINATES cyclic di-GMP receptor MorA sig. 32 56