Homologs of GFF3339 from Xanthobacter sp. DMC5

HTH-type transcriptional regulator PuuR
SEED: Putrescine utilization regulator

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthobacter sp. DMC5 GFF3339 HTH-type transcriptional regulator PuuR insig. 100 100
o Sinorhizobium meliloti 1021 SMc04387 aldehyde dehydrogenase insig. 86 100
o Agrobacterium fabrum C58 Atu3328 aldehyde dehydrogenase strong 84 100
o Bosea sp. OAE506 ABIE41_RS05345 cupin domain-containing protein insig. 79 99
o Azospirillum sp. SherDot2 MPMX19_04921 HTH-type transcriptional regulator PuuR insig. 56 99
o Rhodospirillum rubrum S1H Rru_A2042 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) insig. 54 99
o Azospirillum brasilense Sp245 AZOBR_RS19640 aldehyde dehydrogenase strong 54 99
o Pseudomonas sp. BP01 JOY50_RS09135 cupin domain-containing protein insig. 52 100
o Pseudomonas putida KT2440 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine strong 51 100
o Pseudomonas sp. SVBP6 COO64_RS01380 cupin domain-containing protein insig. 51 100
o Pseudomonas aeruginosa PA14 IKLFDK_26945 XRE family transcriptional regulator insig. 52 100
o Pseudomonas syringae pv. syringae B728a Psyr_0238 Helix-turn-helix motif protein insig. 51 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0238 Helix-turn-helix motif protein insig. 51 100
o Pseudomonas segetis P6 MPMX49_00005 HTH-type transcriptional regulator PuuR strong 51 100
o Shewanella loihica PV-4 Shew_0970 XRE family transcriptional regulator (RefSeq) strong 48 100
o Pseudomonas sp. S08-1 OH686_13700 Putrescine utilization regulator strong 51 100
o Pseudomonas sp. RS175 PFR28_04396 HTH-type transcriptional regulator PuuR strong 51 100
o Pseudomonas stutzeri RCH2 Psest_3791 Predicted transcriptional regulators insig. 49 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS12920 cupin domain-containing protein insig. 52 100
o Pseudomonas fluorescens FW300-N2E3 AO353_09140 XRE family transcriptional regulator strong 51 100
o Shewanella oneidensis MR-1 SO1265 transcriptional regulator, putative (NCBI ptt file) strong 51 100
o Shewanella sp. ANA-3 Shewana3_3100 XRE family transcriptional regulator (RefSeq) strong 49 100
o Pseudomonas fluorescens FW300-N2C3 AO356_12635 XRE family transcriptional regulator strong 50 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4394 Putrescine utilization regulator strong 50 100
o Pseudomonas fluorescens SBW25 PFLU_RS29365 cupin domain-containing protein cofit 50 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS29365 cupin domain-containing protein strong 50 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00005 HTH-type transcriptional regulator PuuR cofit 50 100
o Pseudomonas simiae WCS417 PS417_27690 XRE family transcriptional regulator strong 50 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_815 Putrescine utilization regulator strong 49 100
o Burkholderia phytofirmans PsJN BPHYT_RS23170 XRE family transcriptional regulator insig. 50 100
o Pseudomonas sp. DMC3 GFF387 HTH-type transcriptional regulator PuuR cofit 49 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2147 Putrescine utilization regulator strong 49 100
o Shewanella amazonensis SB2B Sama_2646 XRE family transcriptional regulator (RefSeq) strong 48 100
  Pseudomonas syringae pv. syringae B728a Psyr_2705 Helix-turn-helix motif protein sig. 49 100
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2705 Helix-turn-helix motif protein sig. 49 100
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4357 Putrescine utilization regulator sig. 48 100
  Pseudomonas sp. DMC3 GFF1632 HTH-type transcriptional regulator PuuR cofit 48 100
  Pseudomonas putida KT2440 PP_2884 XRE family transcriptional regulator strong 47 100
  Pseudomonas fluorescens FW300-N2E3 AO353_29285 XRE family transcriptional regulator strong 48 100
  Pseudomonas sp. SVBP6 COO64_RS10815 cupin domain-containing protein insig. 48 100
  Pseudomonas sp. BP01 JOY50_RS05840 cupin domain-containing protein insig. 47 100
o Serratia liquefaciens MT49 IAI46_17165 HTH-type transcriptional regulator PuuR insig. 36 98
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS01235 HTH-type transcriptional regulator PuuR cofit 37 98
o Rahnella sp. WP5 EX31_RS17905 HTH-type transcriptional regulator PuuR insig. 37 98
o Pantoea sp. MT58 IAI47_07115 HTH-type transcriptional regulator PuuR insig. 37 98
o Escherichia coli BL21 ECD_01276 repressor for the divergent puu operons, putrescine inducible strong 36 98
o Escherichia coli ECOR27 NOLOHH_20120 puuR HTH-type transcriptional regulator PuuR insig. 36 98
o Escherichia coli ECOR38 HEPCGN_25765 puuR HTH-type transcriptional regulator PuuR insig. 36 98
o Escherichia coli ECRC62 BNILDI_18270 puuR HTH-type transcriptional regulator PuuR insig. 36 98
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02383 HTH-type transcriptional regulator PuuR insig. 36 98
o Escherichia coli BW25113 b1299 puuR DNA-binding transcriptional repressor (NCBI) strong 36 98
o Escherichia coli ECRC100 OKFHMN_02435 puuR HTH-type transcriptional regulator PuuR cofit 36 98
o Escherichia coli ECRC101 MCAODC_15835 puuR HTH-type transcriptional regulator PuuR insig. 36 98
o Escherichia coli ECRC102 NIAGMN_26605 puuR HTH-type transcriptional regulator PuuR insig. 36 98
o Escherichia coli ECRC98 JDDGAC_04980 puuR HTH-type transcriptional regulator PuuR insig. 36 98
o Escherichia coli ECRC99 KEDOAH_26340 puuR HTH-type transcriptional regulator PuuR no data 36 98
o Klebsiella michiganensis M5al BWI76_RS10700 XRE family transcriptional regulator strong 36 98
o Klebsiella pneumoniae MKP103 KDGMDA_18340 HTH-type transcriptional regulator PuuR insig. 35 98
  Serratia liquefaciens MT49 IAI46_10550 HTH-type transcriptional regulator PuuR insig. 37 98
o Enterobacter asburiae PDN3 EX28DRAFT_1500 Predicted transcriptional regulators insig. 35 98
  Pseudomonas sp. BP01 JOY50_RS05765 helix-turn-helix domain-containing protein no data 33 99
o Fusobacterium nucleatum SB010 HUW76_07320 helix-turn-helix domain-containing protein strong 25 100
  Pseudomonas sp. SVBP6 COO64_RS21060 helix-turn-helix domain-containing protein insig. 32 99
  Pseudomonas aeruginosa PA14 IKLFDK_28600 Cro/Cl family transcriptional regulator insig. 33 99
  Pseudomonas fluorescens FW300-N2E3 AO353_24790 Cro/Cl family transcriptional regulator sig. 32 99
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3219 Transcriptional regulator, Cro/CI family insig. 31 99
  Pseudomonas putida KT2440 PP_2868 Transcriptional regulator, Cro/CI family strong 32 99
  Rhizobium sp. OAE497 ABIE40_RS00150 MerR family transcriptional regulator insig. 35 99
o Cupriavidus basilensis FW507-4G11 RR42_RS00225 XRE family transcriptional regulator insig. 33 99
o Enterobacter sp. TBS_079 MPMX20_04570 HTH-type transcriptional regulator SutR strong 32 91
  Fusobacterium nucleatum SB010 HUW76_01135 cupin domain-containing protein strong 28 100
  Enterobacter asburiae PDN3 EX28DRAFT_4383 transcriptional regulator, XRE family with cupin sensor strong 31 91
o Acidovorax sp. GW101-3H11 Ac3H11_1308 Transcriptional regulator no data 30 97
  Bosea sp. OAE506 ABIE41_RS10690 XRE family transcriptional regulator insig. 28 79
  Desulfovibrio vulgaris Hildenborough JW710 DVU3066 DNA-binding protein (TIGR) sig. 25 98
  Serratia liquefaciens MT49 IAI46_11440 helix-turn-helix transcriptional regulator insig. 26 99
  Pseudomonas putida KT2440 PP_3125 putative transcriptional regulator (Cro/CI family) no data 30 93
  Pseudomonas aeruginosa PA14 IKLFDK_01585 transcriptional regulator PsdR insig. 26 97
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03889 HTH-type transcriptional regulator SutR cofit 29 93
  Pseudomonas fluorescens FW300-N2C3 AO356_06745 DNA-binding protein sig. 26 93
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3201 Transcriptional regulator, MerR family strong 26 93
o Bacteroides stercoris CC31F HMPREF1181_RS01200 helix-turn-helix transcriptional regulator insig. 23 98
o Ralstonia solanacearum GMI1000 RS_RS05775 XRE family transcriptional regulator insig. 31 94
  Sinorhizobium meliloti 1021 SM_b21187 LacI family transcriptional regulator insig. 28 100
  Bosea sp. OAE506 ABIE41_RS13175 XRE family transcriptional regulator insig. 27 96
o Bacteroides ovatus ATCC 8483 BACOVA_01081 hypothetical protein insig. 24 98
  Pseudomonas fluorescens SBW25 PFLU_RS18295 helix-turn-helix domain-containing protein insig. 29 95
  Pseudomonas fluorescens SBW25-INTG PFLU_RS18295 helix-turn-helix domain-containing protein sig. 29 95
  Bacteroides thetaiotaomicron VPI-5482 BT2783 transcriptional regulator (NCBI ptt file) sig. 24 98
  Ralstonia sp. UNC404CL21Col ABZR87_RS06145 XRE family transcriptional regulator insig. 30 88
  Rahnella sp. WP5 EX31_RS05710 helix-turn-helix transcriptional regulator insig. 29 89
o Dickeya dianthicola 67-19 HGI48_RS18970 helix-turn-helix transcriptional regulator cofit 28 91
o Dickeya dianthicola ME23 DZA65_RS20080 helix-turn-helix transcriptional regulator insig. 28 91
  Ralstonia sp. UNC404CL21Col ABZR87_RS18270 XRE family transcriptional regulator insig. 26 93
  Desulfovibrio vulgaris Miyazaki F DvMF_2356 transcriptional regulator, XRE family (RefSeq) insig. 25 98
  Shewanella sp. ANA-3 Shewana3_0319 XRE family transcriptional regulator (RefSeq) strong 31 93
  Rhodopseudomonas palustris CGA009 TX73_013495 XRE family transcriptional regulator insig. 28 91
  Pectobacterium carotovorum WPP14 HER17_RS21700 XRE family transcriptional regulator cofit 32 89
  Pseudomonas sp. BP01 JOY50_RS21490 helix-turn-helix domain-containing protein no data 28 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS10640 XRE family transcriptional regulator cofit 29 90