| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Variovorax sp. SCN45 | GFF1625 | | Transcriptional regulator, LysR family | insig. | 100 | 100 |
| o | Pseudomonas sp. BP01 | JOY50_RS02255 | | LysR substrate-binding domain-containing protein | insig. | 50 | 98 |
| o | Azospirillum sp. SherDot2 | MPMX19_05150 | | HTH-type transcriptional activator CmpR | insig. | 39 | 99 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2161 | | Transcriptional regulators, LysR family | insig. | 39 | 96 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS13130 | | LysR family transcriptional regulator | insig. | 36 | 97 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03727 | | HTH-type transcriptional regulator CysL | cofit | 37 | 97 |
| | Variovorax sp. SCN45 | GFF1616 | | Phosphonate uptake and metabolism regulator, LysR-family | insig. | 34 | 97 |
| o | Pseudomonas orientalis W4I3 | QF045_RS18800 | | LysR substrate-binding domain-containing protein | insig. | 37 | 97 |
| | Variovorax sp. SCN45 | GFF1617 | | Phosphonate uptake and metabolism regulator, LysR-family | insig. | 34 | 97 |
| | Pseudomonas simiae WCS417 | PS417_17140 | | LysR family transcriptional regulator | insig. | 36 | 97 |
| o | Paraburkholderia graminis OAS925 | ABIE53_002275 | | aminoethylphosphonate catabolism LysR family transcriptional regulator | insig. | 34 | 98 |
| | Pseudomonas putida KT2440 | PP_2547 | | Transcriptional regulator, LysR family | insig. | 37 | 95 |
| | Pseudomonas sp. BP01 | JOY50_RS10245 | | LysR substrate-binding domain-containing protein | insig. | 36 | 97 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01130 | | transcriptional regulator, LysR family | no data | 34 | 98 |
| o | Pseudomonas sp. SVBP6 | COO64_RS19295 | | LysR substrate-binding domain-containing protein | insig. | 35 | 97 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_06215 | | LysR family transcriptional regulator | no data | 37 | 97 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS18880 | | LysR substrate-binding domain-containing protein | insig. | 37 | 97 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS53020 | | LysR substrate-binding domain-containing protein | insig. | 37 | 97 |
| | Pseudomonas putida KT2440 | PP_2210 | | LysR family transcriptional regulator | strong | 35 | 97 |
| | Sinorhizobium meliloti 1021 | SM_b21535 | | LysR family transcriptional regulator | insig. | 33 | 98 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS19070 | | LysR family transcriptional regulator | insig. | 37 | 95 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS19070 | | LysR family transcriptional regulator | insig. | 37 | 95 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2572 | | Phosphonate uptake and metabolism regulator, LysR-family | insig. | 37 | 97 |
| | Pseudomonas sp. DMC3 | GFF1457 | | HTH-type transcriptional activator CmpR | insig. | 36 | 97 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3960 | | Phosphonate uptake and metabolism regulator, LysR-family | no data | 37 | 97 |
| | Pseudomonas sp. DMC3 | GFF1456 | | HTH-type transcriptional regulator CysL | cofit | 36 | 97 |
| | Pseudomonas segetis P6 | ACVTMO_RS07340 | | LysR substrate-binding domain-containing protein | insig. | 34 | 97 |
| | Pseudomonas sp. BP01 | JOY50_RS12660 | | LysR substrate-binding domain-containing protein | insig. | 34 | 97 |
| | Pseudomonas simiae WCS417 | PS417_17135 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS10625 | | LysR family transcriptional regulator | no data | 33 | 98 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_20245 | | LysR family transcriptional regulator | insig. | 37 | 97 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2573 | | transcriptional regulator, MerR family | insig. | 34 | 97 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3961 | | transcriptional regulator, MerR family | insig. | 34 | 97 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_07510 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS19495 | | LysR substrate-binding domain-containing protein | sig. | 35 | 97 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS53610 | | LysR substrate-binding domain-containing protein | sig. | 35 | 97 |
| | Pseudomonas sp. BP01 | JOY50_RS02285 | | LysR substrate-binding domain-containing protein | insig. | 34 | 94 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS20445 | | LysR substrate-binding domain-containing protein | insig. | 35 | 95 |
| o | Agrobacterium fabrum C58 | Atu4411 | | LysR family transcriptional regulator | insig. | 34 | 97 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS19870 | | LysR family transcriptional regulator | insig. | 33 | 95 |
| | Ralstonia solanacearum UW163 | UW163_RS19305 | | LysR family transcriptional regulator | insig. | 33 | 95 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS20480 | | LysR family transcriptional regulator | insig. | 31 | 95 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS28610 | | LysR family transcriptional regulator | insig. | 32 | 97 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS28610 | | LysR family transcriptional regulator | insig. | 32 | 97 |
| | Pseudomonas putida KT2440 | PP_5138 | | putative transcriptional regulator LysR family | insig. | 32 | 97 |
| | Pseudomonas sp. DMC3 | GFF257 | | HTH-type transcriptional activator CmpR | insig. | 32 | 97 |
| | Pseudomonas sp. RS175 | PFR28_01936 | | HTH-type transcriptional activator CmpR | insig. | 31 | 97 |
| | Pseudomonas segetis P6 | ACVTMO_RS02925 | | LysR substrate-binding domain-containing protein | insig. | 30 | 97 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_960 | | Transcriptional regulators, LysR family | insig. | 32 | 97 |
| | Pseudomonas simiae WCS417 | PS417_26950 | | LysR family transcriptional regulator | insig. | 32 | 97 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_05531 | | HTH-type transcriptional activator CmpR | insig. | 31 | 97 |
| | Pseudomonas orientalis W4I3 | QF045_RS01345 | | LysR family transcriptional regulator | insig. | 32 | 97 |
| | Pseudomonas sp. BP01 | JOY50_RS20700 | | LysR family transcriptional regulator | insig. | 31 | 97 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS28250 | | LysR family transcriptional regulator | insig. | 33 | 95 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS34015 | | LysR family transcriptional regulator | insig. | 34 | 83 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2292 | | Transcriptional regulators, LysR family | insig. | 31 | 97 |
| o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3918 | | Transcriptional regulator | insig. | 32 | 97 |
| | Pseudomonas sp. SVBP6 | COO64_RS12735 | | LysR family transcriptional regulator | insig. | 31 | 97 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_08415 | | LysR family transcriptional regulator | insig. | 31 | 97 |
| | Pseudomonas putida KT2440 | PP_3660 | | Transcriptional regulator, LysR family | insig. | 34 | 80 |
| | Pseudomonas sp. BP01 | JOY50_RS07920 | | LysR family transcriptional regulator | insig. | 34 | 80 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2192 | | Cys regulon transcriptional activator CysB | insig. | 32 | 84 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS08845 | | LysR family transcriptional regulator | strong | 26 | 97 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS07245 | | LysR family transcriptional regulator | insig. | 31 | 82 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS26205 | | LysR family transcriptional regulator | insig. | 29 | 82 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS16560 | | HTH-type transcriptional activator CmpR | sig. | 30 | 83 |
| | Dechlorosoma suillum PS | Dsui_2869 | | transcriptional regulator | strong | 30 | 94 |
| | Variovorax sp. OAS795 | ABID97_RS12840 | | LysR family transcriptional regulator | no data | 30 | 83 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1310 | cmpR | ndhF3 operon transcriptional regulator | no data | 28 | 81 |
| | Pseudomonas sp. S08-1 | OH686_10780 | | Transcriptional regulator, LysR family | insig. | 30 | 82 |
| | Rhodopseudomonas palustris CGA009 | TX73_000670 | | LysR family transcriptional regulator | insig. | 28 | 93 |
| | Pseudomonas segetis P6 | ACVTMO_RS13895 | | LysR family transcriptional regulator | insig. | 28 | 94 |
| | Acinetobacter baumannii LAC-4 | RR41_RS12920 | | LysR family transcriptional regulator | no data | 28 | 81 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05209 | | transcriptional regulator, LysR family | strong | 32 | 82 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS11310 | | LysR family transcriptional regulator | insig. | 31 | 82 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_10035 | | LysR family transcriptional regulator | strong | 27 | 94 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS29885 | | LysR family transcriptional regulator | strong | 26 | 96 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS29885 | | LysR family transcriptional regulator | strong | 26 | 96 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_727 | | LysR family transcriptional regulator PA5437 | strong | 26 | 96 |
| | Pseudomonas sp. SVBP6 | COO64_RS07690 | | LysR family transcriptional regulator | insig. | 30 | 98 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02936 | | HTH-type transcriptional regulator GltC | insig. | 30 | 97 |
| | Pseudomonas sp. RS175 | PFR28_04519 | | HTH-type transcriptional activator CmpR | strong | 26 | 94 |
| | Pseudomonas simiae WCS417 | PS417_28220 | | LysR family transcriptional regulator | strong | 26 | 96 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS19020 | | LysR family transcriptional regulator | insig. | 29 | 80 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS34110 | | LysR substrate-binding domain-containing protein | insig. | 29 | 81 |
| | Xanthobacter sp. DMC5 | GFF2449 | | HTH-type transcriptional activator CmpR | insig. | 31 | 83 |
| | Pseudomonas sp. RS175 | PFR28_02477 | | HTH-type transcriptional regulator GltC | insig. | 29 | 81 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01292 | | transcriptional regulator, LysR family | no data | 29 | 82 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_26240 | | LysR family transcriptional regulator PycR | strong | 28 | 81 |
| | Pseudomonas sp. S08-1 | OH686_13195 | | Transcriptional regulator, LysR family | strong | 27 | 97 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4277 | | LysR family transcriptional regulator PA5437 | strong | 26 | 94 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_27930 | | LysR family transcriptional regulator | strong | 30 | 81 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0767 | | transcriptional regulator, LysR family | insig. | 29 | 98 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0767 | | transcriptional regulator, LysR family | insig. | 29 | 98 |
| | Shewanella loihica PV-4 | Shew_1245 | | LysR family transcriptional regulator (RefSeq) | strong | 29 | 92 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS25465 | pycR;inference=COORDINATES | LysR family transcriptional regulator PycR | strong | 28 | 81 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS57915 | pycR;inference=COORDINATES | LysR family transcriptional regulator PycR | strong | 28 | 81 |
| | Variovorax sp. OAS795 | ABID97_RS24450 | | LysR family transcriptional regulator | insig. | 31 | 84 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS23600 | | LysR family transcriptional regulator | insig. | 29 | 82 |
| | Rhodospirillum rubrum S1H | Rru_A2401 | | RuBisCO transcriptional regulator cbbR, LysR family (NCBI) | strong | 29 | 84 |