| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0558 | | periplasmic serine protease, Do/DeqQ family | strong | 100 | 100 |
| o | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_19595 | | deoxyribonuclease HsdR | strong | 49 | 99 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_08245 | | deoxyribonuclease HsdR | insig. | 47 | 99 |
| o | Bacteroides ovatus ATCC 8483 | BACOVA_00614 | | peptidase Do | strong | 42 | 97 |
| o | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS16415 | | Do family serine endopeptidase | cofit | 46 | 87 |
| o | Bacteroides thetaiotaomicron VPI-5482 | BT1312 | | serine protease precursor (NCBI ptt file) | sig. | 42 | 97 |
| o | Bacteroides stercoris CC31F | HMPREF1181_RS10785 | | trypsin-like peptidase domain-containing protein | sig. | 42 | 97 |
| o | Phocaeicola dorei CL03T12C01 | ABI39_RS13980 | | Do family serine endopeptidase | strong | 42 | 97 |
| o | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS17765 | | Do family serine endopeptidase | strong | 40 | 97 |
| | Cellulophaga baltica 18 | M666_RS17810 | | trypsin-like peptidase domain-containing protein | no data | 52 | 66 |
| o | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS21675 | | Do family serine endopeptidase | strong | 41 | 97 |
| o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS23030 | | serine protease | sig. | 41 | 93 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4673 | | Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain | insig. | 40 | 86 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_03285 | | serine protease MucD | sig. | 37 | 87 |
| o | Magnetospirillum magneticum AMB-1 | AMB_RS17665 | | PDZ domain-containing protein | no data | 37 | 89 |
| o | Pseudomonas putida KT2440 | PP_1430 | | putative periplasmic serine endoprotease DegP-like | strong | 37 | 87 |
| o | Pseudomonas sp. SVBP6 | COO64_RS16540 | | DegQ family serine endoprotease | insig. | 37 | 87 |
| o | Pseudomonas sp. BP01 | JOY50_RS14680 | | DegQ family serine endoprotease | insig. | 37 | 87 |
| | Pseudomonas segetis P6 | MPMX49_01404 | | Periplasmic serine endoprotease DegP | strong | 40 | 79 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2753 | | HtrA protease/chaperone protein | strong | 38 | 87 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_04560 | | serine peptidase | sig. | 38 | 87 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS06535 | | serine protease | no data | 36 | 88 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_3955 | | Peptidase S1, chymotrypsin:PDZ/DHR/GLGF | strong | 35 | 89 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3955 | | Peptidase S1, chymotrypsin:PDZ/DHR/GLGF | strong | 35 | 89 |
| o | Dechlorosoma suillum PS | Dsui_1606 | | periplasmic serine protease, Do/DeqQ family | insig. | 40 | 82 |
| o | Pseudomonas sp. RS175 | PFR28_00693 | | Periplasmic serine endoprotease DegP | strong | 37 | 89 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3326 | | HtrA protease/chaperone protein | no data | 37 | 87 |
| | Bosea sp. OAE506 | ABIE41_RS21445 | | trypsin-like peptidase domain-containing protein | insig. | 45 | 65 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4513 | | HtrA protease/chaperone protein | sig. | 37 | 87 |
| o | Pseudomonas sp. S08-1 | OH686_20060 | | HtrA protease/chaperone protein | cofit | 36 | 87 |
| | Azospirillum brasilense Sp245 | AZOBR_RS17805 | | serine protease | insig. | 38 | 77 |
| o | Pseudomonas sp. DMC3 | GFF2280 | | Periplasmic serine endoprotease DegP | insig. | 37 | 89 |
| o | Azospirillum sp. SherDot2 | MPMX19_05995 | | hypothetical protein | insig. | 37 | 82 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS07245 | | DegQ family serine endoprotease | cofit | 36 | 87 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS07245 | | DegQ family serine endoprotease | strong | 36 | 87 |
| o | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2974 | | Outer membrane stress sensor protease DegQ, serine protease | insig. | 39 | 80 |
| o | Pseudomonas stutzeri RCH2 | Psest_3096 | | periplasmic serine protease, Do/DeqQ family | no data | 36 | 89 |
| o | Pseudomonas simiae WCS417 | PS417_07135 | | serine peptidase | no data | 37 | 87 |
| o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_1382 | | periplasmic serine protease, Do/DeqQ family | strong | 35 | 99 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_17640 | | serine peptidase | sig. | 36 | 87 |
| o | Paraburkholderia graminis OAS925 | ABIE53_003416 | | serine protease Do | strong | 36 | 86 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS07170 | | DegQ family serine endoprotease | insig. | 36 | 85 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS10180 | | DegQ family serine endoprotease | insig. | 34 | 88 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_3283 | | periplasmic serine protease, Do/DeqQ family | insig. | 38 | 81 |
| o | Klebsiella michiganensis M5al | BWI76_RS25365 | | serine endoprotease DegQ | sig. | 38 | 81 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01575 | | Periplasmic serine endoprotease DegP | cofit | 37 | 87 |
| o | Pantoea sp. MT58 | IAI47_17260 | | serine endoprotease DegQ | insig. | 39 | 81 |
| o | Enterobacter sp. TBS_079 | MPMX20_04138 | | Periplasmic pH-dependent serine endoprotease DegQ | insig. | 38 | 81 |
| | Azospirillum sp. SherDot2 | MPMX19_01249 | | Periplasmic serine endoprotease DegP | insig. | 37 | 83 |
| o | Rhodopseudomonas palustris CGA009 | TX73_023750 | | Do family serine endopeptidase | insig. | 36 | 92 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04178 | | serine protease Do | sig. | 36 | 86 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_2733 | | protease Do (RefSeq) | strong | 35 | 87 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS02485 | | DegQ family serine endoprotease | insig. | 42 | 69 |
| o | Escherichia coli Nissle 1917 | ECOLIN_RS18545 | | serine endoprotease DegQ | insig. | 39 | 81 |
| o | Rhizobium sp. OAE497 | ABIE40_RS05695 | | Do family serine endopeptidase | sig. | 35 | 84 |
| o | Escherichia fergusonii Becca | EFB2_00596 | | Periplasmic pH-dependent serine endoprotease DegQ | insig. | 39 | 81 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS19985 | | serine endoprotease DegQ | insig. | 37 | 83 |
| o | Rhodanobacter denitrificans MT42 | LRK55_RS16665 | | Do family serine endopeptidase | strong | 36 | 85 |
| o | Rhodanobacter sp. FW510-T8 | OKGIIK_07890 | | Periplasmic serine endoprotease DegP-like | insig. | 35 | 86 |
| o | Rhodospirillum rubrum S1H | Rru_A2201 | | Peptidase S1C, Do (NCBI) | sig. | 36 | 87 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0308 | | protease Do (RefSeq) | strong | 43 | 67 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS09425 | | serine endoprotease DegQ | cofit | 39 | 81 |
| o | Marinobacter adhaerens HP15 | HP15_779 | | serine protease MucD precursor | sig. | 38 | 80 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_06190 | | serine endoprotease DegQ | insig. | 37 | 81 |
| o | Escherichia coli ECOR38 | HEPCGN_16675 | degQ | serine endoprotease DegQ | insig. | 39 | 81 |
| o | Alteromonas macleodii MIT1002 | MIT1002_00842 | | Periplasmic pH-dependent serine endoprotease DegQ precursor | cofit | 38 | 86 |
| o | Shewanella sp. ANA-3 | Shewana3_0690 | | peptidase Do (RefSeq) | insig. | 39 | 82 |
| o | Escherichia coli BL21 | ECD_03094 | | serine endoprotease, periplasmic | insig. | 39 | 81 |
| o | Escherichia coli ECOR27 | NOLOHH_09605 | degQ | serine endoprotease DegQ | insig. | 39 | 81 |
| o | Escherichia coli ECRC100 | OKFHMN_17805 | degQ | serine endoprotease DegQ | insig. | 39 | 81 |
| o | Escherichia coli ECRC101 | MCAODC_08325 | degQ | serine endoprotease DegQ | insig. | 39 | 81 |
| o | Escherichia coli ECRC102 | NIAGMN_15565 | degQ | serine endoprotease DegQ | insig. | 39 | 81 |
| o | Escherichia coli ECRC62 | BNILDI_01930 | degQ | serine endoprotease DegQ | insig. | 39 | 81 |
| o | Escherichia coli ECRC98 | JDDGAC_21430 | degQ | serine endoprotease DegQ | insig. | 39 | 81 |
| o | Escherichia coli ECRC99 | KEDOAH_10345 | degQ | serine endoprotease DegQ | no data | 39 | 81 |
| o | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_00470 | | Periplasmic pH-dependent serine endoprotease DegQ | insig. | 39 | 81 |
| o | Escherichia coli BW25113 | b3234 | degQ | serine endoprotease, periplasmic (NCBI) | sig. | 39 | 81 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS04590 | | DegQ family serine endoprotease | cofit | 34 | 81 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS16950 | | Do family serine endopeptidase | strong | 36 | 85 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_4743 | | Outer membrane stress sensor protease DegS | no data | 44 | 66 |
| | Variovorax sp. SCN45 | GFF5365 | | Outer membrane stress sensor protease DegS | insig. | 43 | 69 |
| o | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS11995 | | Do family serine endopeptidase | insig. | 37 | 85 |
| | Ralstonia solanacearum GMI1000 | RS_RS05240 | | PDZ domain-containing protein | sig. | 35 | 84 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS14065 | | serine peptidase | strong | 36 | 81 |
| | Rhodopseudomonas palustris CGA009 | TX73_009940 | | Do family serine endopeptidase | sig. | 36 | 84 |
| o | Agrobacterium fabrum C58 | Atu0977 | | serine protease DO-like protease | strong | 36 | 89 |
| o | Lysobacter sp. OAE881 | ABIE51_RS13880 | | DegQ family serine endoprotease | cofit | 36 | 85 |
| o | Dickeya dianthicola 67-19 | HGI48_RS01520 | | serine endoprotease DegQ | insig. | 38 | 81 |
| o | Dickeya dianthicola ME23 | DZA65_RS01585 | | serine endoprotease DegQ | sig. | 38 | 81 |
| | Shewanella oneidensis MR-1 | SO3942 | | serine protease, HtrA/DegQ/DegS family (NCBI ptt file) | no data | 43 | 66 |
| | Azospirillum sp. SherDot2 | MPMX19_02380 | | Periplasmic pH-dependent serine endoprotease DegQ | insig. | 43 | 64 |
| o | Dickeya dadantii 3937 | DDA3937_RS01605 | | serine endoprotease DegQ | sig. | 38 | 81 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3911 | | protease Do (RefSeq) | cofit | 38 | 75 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS16210 | | peptidase | strong | 36 | 84 |
| | Variovorax sp. OAS795 | ABID97_RS23065 | | trypsin-like peptidase domain-containing protein | strong | 44 | 66 |
| | Shewanella amazonensis SB2B | Sama_3073 | | serine protease (RefSeq) | strong | 38 | 83 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS14460 | | peptidase | strong | 34 | 84 |
| | Ralstonia solanacearum UW163 | UW163_RS11925 | | peptidase | insig. | 34 | 84 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04358 | | serine protease Do | sig. | 34 | 84 |
| | Paraburkholderia graminis OAS925 | ABIE53_003040 | | serine protease Do | strong | 33 | 87 |