| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_06645 | | response regulator | insig. | 100 | 100 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_05860 | | response regulator | insig. | 38 | 99 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_3168 | | Response regulator | insig. | 34 | 84 |
| | Alteromonas macleodii MIT1002 | MIT1002_03637 | | Hydrogenase transcriptional regulatory protein hupR1 | insig. | 37 | 76 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_05525 | | transcriptional regulator | insig. | 33 | 76 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS05355 | | response regulator receiver modulated metal-depenent phosphohydrolase | insig. | 34 | 81 |
| | Azospirillum sp. SherDot2 | MPMX19_05290 | | Hydrogenase transcriptional regulatory protein hupR1 | insig. | 31 | 87 |
| | Dechlorosoma suillum PS | Dsui_1886 | | response regulator containing a CheY-like receiver domain and an HD-GYP domain | cofit | 36 | 71 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2271 | | His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | strong | 31 | 86 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS16850 | | HD domain-containing phosphohydrolase | insig. | 33 | 89 |
| | Pseudomonas sp. S08-1 | OH686_08945 | | hypothetical protein | cofit | 34 | 73 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS18645 | | chemotaxis protein CheY | insig. | 30 | 84 |
| | Pseudomonas simiae WCS417 | PS417_05440 | | chemotaxis protein CheY | insig. | 31 | 87 |
| | Dechlorosoma suillum PS | Dsui_1154 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | insig. | 31 | 83 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_12885 | | two-component system response regulator | insig. | 39 | 58 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS05625 | | two-component system response regulator | insig. | 34 | 77 |
| | Pseudomonas putida KT2440 | PP_2942 | | Response regulator | insig. | 33 | 80 |
| | Pseudomonas sp. SVBP6 | COO64_RS20885 | | HD domain-containing phosphohydrolase | insig. | 32 | 82 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2210 | | Hydrogenase transcriptional regulatory protein HoxA | insig. | 31 | 78 |
| | Shewanella oneidensis MR-1 | SO2541 | | response regulator (NCBI ptt file) | insig. | 35 | 76 |
| | Marinobacter adhaerens HP15 | HP15_3664 | | response regulator receiver modulated metal dependent phosphohydrolase | cofit | 32 | 76 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS05525 | | response regulator | insig. | 32 | 92 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS05525 | | response regulator | insig. | 32 | 92 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS09930 | | hybrid sensor histidine kinase/response regulator | cofit | 32 | 86 |
| | Xanthobacter sp. DMC5 | GFF4433 | | Hydrogenase transcriptional regulatory protein hupR1 | insig. | 29 | 92 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01276 | | Regulator of RpoS | cofit | 32 | 73 |
| | Dickeya dianthicola 67-19 | HGI48_RS10210 | | response regulator | insig. | 33 | 81 |
| | Dickeya dianthicola ME23 | DZA65_RS10630 | | response regulator | insig. | 33 | 81 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_05530 | | two-component system response regulator | cofit | 33 | 73 |
| | Rhodospirillum rubrum S1H | Rru_A0692 | | Response regulator receiver domain protein (CheY) (NCBI) | insig. | 32 | 80 |
| | Pseudomonas orientalis W4I3 | QF045_RS08375 | | response regulator | insig. | 31 | 85 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS05665 | | FAD-dependent oxidoreductase | cofit | 35 | 70 |
| | Dechlorosoma suillum PS | Dsui_2046 | | PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein | cofit | 30 | 84 |
| | Variovorax sp. OAS795 | ABID97_RS13590 | | sigma-54 dependent transcriptional regulator | insig. | 30 | 77 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS02585 | | response regulator | insig. | 29 | 78 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_14640 | | two-component system response regulator | insig. | 29 | 78 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS33010 | | response regulator | insig. | 29 | 78 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS04750 | | two-component system response regulator | insig. | 38 | 58 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS35650 | | two-component system response regulator | insig. | 38 | 58 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5467 | | Response regulator | sig. | 30 | 82 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_02182 | | response regulator receiver domain protein | cofit | 30 | 78 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS14875 | | response regulator | insig. | 34 | 78 |
| | Pseudomonas sp. SVBP6 | COO64_RS25630 | | chemotaxis response regulator CheY | sig. | 27 | 79 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3913 | | Helix-turn-helix, Fis-type | insig. | 35 | 85 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3913 | | Helix-turn-helix, Fis-type | insig. | 35 | 85 |
| | Paraburkholderia graminis OAS925 | ABIE53_001082 | | two-component system probable response regulator PhcQ | sig. | 32 | 70 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_17715 | | chemotaxis protein CheY | insig. | 30 | 80 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS14555 | | response regulator | strong | 29 | 73 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_788 | | Response regulator | insig. | 31 | 86 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS06360 | | chemotaxis protein CheY | insig. | 41 | 44 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS10925 | | response regulator | insig. | 28 | 82 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS15170 | | response regulator | insig. | 28 | 82 |
| | Pseudomonas sp. BP01 | JOY50_RS00580 | | chemotaxis response regulator CheY | insig. | 27 | 79 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02781 | | Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains | insig. | 34 | 71 |
| | Dickeya dadantii 3937 | DDA3937_RS10180 | | response regulator | insig. | 33 | 81 |
| | Pseudomonas sp. BP01 | JOY50_RS14825 | | sigma-54 dependent transcriptional regulator | insig. | 32 | 81 |
| | Ralstonia solanacearum GMI1000 | RS_RS13700 | | response regulator | insig. | 31 | 71 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02495 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | insig. | 41 | 44 |
| | Alteromonas macleodii MIT1002 | MIT1002_01104 | | Chemotaxis protein CheY | insig. | 31 | 75 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS01380 | | response regulator | sig. | 30 | 71 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS05810 | | response regulator | insig. | 30 | 71 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS11490 | | response regulator | insig. | 30 | 71 |
| | Ralstonia solanacearum UW163 | UW163_RS07815 | | response regulator | insig. | 30 | 71 |
| | Pseudomonas sp. RS175 | PFR28_03482 | | Sensor histidine kinase RcsC | cofit | 29 | 82 |
| | Paraburkholderia graminis OAS925 | ABIE53_006006 | | adenylate cyclase | sig. | 34 | 71 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_18205 | | Fis family transcriptional regulator | insig. | 33 | 78 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2923 | | two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) | insig. | 31 | 78 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16190 | | chemotaxis protein CheY | insig. | 30 | 86 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2897 | | two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) | insig. | 28 | 82 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5565 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 33 | 78 |
| | Pseudomonas stutzeri RCH2 | Psest_1741 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | strong | 27 | 79 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_3165 | | diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) | insig. | 29 | 80 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS05325 | | chemotaxis protein CheY | insig. | 32 | 79 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS17420 | | chemotaxis protein CheY | insig. | 39 | 44 |
| | Pseudomonas putida KT2440 | PP_1066 | | C4-dicarboxylate transport transcriptional regulatory protein | strong | 33 | 78 |
| | Pseudomonas sp. DMC3 | GFF4159 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 30 | 85 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS00710 | | hypothetical protein | insig. | 30 | 81 |
| | Pseudomonas segetis P6 | ACVTMO_RS20380 | | hybrid sensor histidine kinase/response regulator | strong | 28 | 100 |
| | Rhodopseudomonas palustris CGA009 | TX73_006030 | | response regulator | insig. | 27 | 82 |
| | Pseudomonas segetis P6 | ACVTMO_RS15485 | | chemotaxis response regulator CheY | strong | 27 | 79 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS26785 | | chemotaxis protein CheY | insig. | 31 | 77 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS11550 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 28 | 80 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_00493 | | ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein | insig. | 28 | 80 |
| | Marinobacter adhaerens HP15 | HP15_2328 | | two component, sigma54 specific, transcriptional regulator, Fis family | strong | 33 | 82 |
| | Pseudomonas sp. RS175 | PFR28_03376 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | sig. | 32 | 78 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_776 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 32 | 78 |
| | Pseudomonas sp. SVBP6 | COO64_RS16760 | | sigma-54 dependent transcriptional regulator | insig. | 30 | 94 |
| | Dechlorosoma suillum PS | Dsui_1890 | | diguanylate cyclase (GGDEF) domain-containing protein | insig. | 29 | 72 |
| | Dechlorosoma suillum PS | Dsui_1719 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | insig. | 28 | 80 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3436 | | Response regulator receiver | strong | 28 | 78 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3436 | | Response regulator receiver | insig. | 28 | 78 |
| | Pseudomonas sp. RS175 | PFR28_03462 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | strong | 28 | 94 |
| | Pseudomonas sp. S08-1 | OH686_02725 | | Chemotaxis regulator - transmits chemoreceptor signals to flagellar motor components CheY | sig. | 25 | 80 |
| | Ralstonia solanacearum GMI1000 | RS_RS01635 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 28 | 99 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS05630 | | chemotaxis response regulator CheY | insig. | 27 | 79 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_06925 | | chemotaxis protein CheY | sig. | 27 | 79 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS47160 | | chemotaxis response regulator CheY | sig. | 27 | 79 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16265 | | Fis family transcriptional regulator | strong | 33 | 78 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS22520 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 28 | 99 |
| | Pseudomonas segetis P6 | ACVTMO_RS01055 | | sigma-54-dependent transcriptional regulator | insig. | 31 | 77 |