Homologs of CA265_RS15190 from Pedobacter sp. GW460-11-11-14-LB5

RNA polymerase sigma factor
SEED: RNA polymerase ECF-type sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15190 RNA polymerase sigma factor insig. 100 100
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 75 98
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 63 96
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS13165 RNA polymerase sigma factor insig. 53 98
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16945 RNA polymerase sigma factor sig. 50 96
o Phocaeicola dorei CL03T12C01 ABI39_RS12855 RNA polymerase sigma factor insig. 50 96
o Bacteroides thetaiotaomicron VPI-5482 BT4347 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 48 99
o Bacteroides ovatus ATCC 8483 BACOVA_05165 Sigma-70 region 2 insig. 50 97
o Bacteroides stercoris CC31F HMPREF1181_RS05860 sigma-70 family RNA polymerase sigma factor insig. 49 96
  Phocaeicola dorei CL03T12C01 ABI39_RS11710 RNA polymerase sigma factor insig. 49 87
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15730 RNA polymerase sigma factor sig. 49 87
  Bacteroides ovatus ATCC 8483 BACOVA_05461 Sigma-70 region 2 insig. 46 90
  Bacteroides thetaiotaomicron VPI-5482 BT4647 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 48 90
  Bacteroides stercoris CC31F HMPREF1181_RS11830 sigma-70 family RNA polymerase sigma factor insig. 45 88
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2774 RNA polymerase sigma factor, sigma-70 family insig. 46 98
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2047 RNA polymerase sigma factor, sigma-70 family strong 32 90
o Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 28 87
  Marinobacter adhaerens HP15 HP15_775 RNA polymerase sigma-70 RpoE type insig. 33 82
o Klebsiella michiganensis M5al BWI76_RS21355 RNA polymerase sigma factor RpoE no data 34 87
o Shewanella sp. ANA-3 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) no data 33 94
o Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 33 94
o Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 32 95
o Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 27 87
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 27 87
o Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 32 87
o Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 32 88
o Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 32 95
o Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 32 95
o Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 32 95
o Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 32 95
o Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 32 95
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 32 95
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 32 95
o Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 32 95
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 32 95
o Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 33 94
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 28 87
o Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 31 88
o Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 31 88
o Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 30 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 31 88
o Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 31 95
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 31 95
o Lysobacter sp. OAE881 ABIE51_RS13890 RNA polymerase sigma factor RpoE strong 30 94
o Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 34 87
o Escherichia coli BL21 ECD_02467 RNA polymerase sigma E factor no data 32 87
o Escherichia fergusonii Becca EFB2_01323 ECF RNA polymerase sigma-E factor no data 32 87
o Escherichia coli ECOR27 NOLOHH_13050 rpoE RNA polymerase sigma factor RpoE no data 32 87
o Escherichia coli ECOR38 HEPCGN_20520 rpoE RNA polymerase sigma factor RpoE no data 32 87
o Escherichia coli ECRC101 OKFHMN_21375 rpoE RNA polymerase sigma factor RpoE no data 32 87
o Escherichia coli ECRC101 MCAODC_11905 rpoE RNA polymerase sigma factor RpoE no data 32 87
o Escherichia coli ECRC102 NIAGMN_19145 rpoE RNA polymerase sigma factor RpoE no data 32 87
o Escherichia coli ECRC62 BNILDI_11850 rpoE RNA polymerase sigma factor RpoE no data 32 87
o Escherichia coli ECRC98 JDDGAC_25040 rpoE RNA polymerase sigma factor RpoE no data 32 87
o Escherichia coli ECRC99 KEDOAH_06845 rpoE RNA polymerase sigma factor RpoE no data 32 87
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01134 ECF RNA polymerase sigma-E factor no data 32 87
o Escherichia coli Nissle 1917 ECOLIN_RS14560 RNA polymerase sigma factor RpoE no data 32 87
o Escherichia coli BW25113 b2573 rpoE RNA polymerase, sigma 24 (sigma E) factor (NCBI) no data 32 87
  Lysobacter sp. OAE881 ABIE51_RS16295 sigma-70 family RNA polymerase sigma factor insig. 34 85
o Erwinia tracheiphila SCR3 LU632_RS15425 rpoE RNA polymerase sigma factor RpoE strong 33 89
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2107 RNA polymerase sigma factor RpoE no data 32 87
o Vibrio cholerae E7946 ATCC 55056 CSW01_12485 RNA polymerase sigma factor RpoE no data 33 87
o Enterobacter asburiae PDN3 EX28DRAFT_0072 RNA polymerase sigma factor RpoE no data 32 87
o Enterobacter sp. TBS_079 MPMX20_03444 ECF RNA polymerase sigma-E factor no data 32 87
  Bacteroides thetaiotaomicron VPI-5482 BT1817 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 32 87
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07715 RNA polymerase sigma factor no data 34 89
o Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 30 87
o Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 33 94
o Pantoea sp. MT58 IAI47_04850 RNA polymerase sigma factor RpoE no data 31 87
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE insig. 27 87
o Rahnella sp. WP5 EX31_RS21800 RNA polymerase sigma factor RpoE no data 31 87
o Serratia liquefaciens MT49 IAI46_19585 RNA polymerase sigma factor RpoE no data 31 87
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3339 RNA polymerase sigma factor RpoE cofit 28 89
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_00665 RNA polymerase subunit sigma-24 strong 33 85
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 30 94
o Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 30 94
o Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 30 94
o Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 30 94
o Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 29 87
o Dickeya dianthicola 67-19 HGI48_RS15850 RNA polymerase sigma factor RpoE cofit 31 87
o Dickeya dianthicola ME23 DZA65_RS16930 RNA polymerase sigma factor RpoE strong 31 87
o Pectobacterium carotovorum WPP14 HER17_RS05780 RNA polymerase sigma factor RpoE no data 30 87
o Dickeya dadantii 3937 DDA3937_RS15765 RNA polymerase sigma factor RpoE strong 31 87
o Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE cofit 30 87
o Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 29 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10600 RNA polymerase subunit sigma-24 strong 39 70
  Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 31 85
o Shewanella amazonensis SB2B Sama_0874 RNA polymerase sigma factor RpoE (RefSeq) strong 30 94
o Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 29 94
  Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 29 85
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3635.1 RNA polymerase ECF-type sigma factor insig. 30 80
  Variovorax sp. SCN45 GFF3863 RNA polymerase sigma factor RpoE insig. 30 85
o Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 30 87
o Azospirillum sp. SherDot2 MPMX19_04274 RNA polymerase sigma-H factor insig. 31 78
  Shewanella oneidensis MR-1 SO3840 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 29 85
  Alteromonas macleodii MIT1002 MIT1002_00882 Sigma-W factor insig. 26 86
  Azospirillum brasilense Sp245 AZOBR_RS31600 RNA polymerase insig. 29 92
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 27 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2139 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 33 87
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 27 88