Homologs of AO353_16865 from Pseudomonas fluorescens FW300-N2E3

RNA-binding protein
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase F

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas fluorescens FW300-N2E3 AO353_16865 RNA-binding protein insig. 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS05940 RNA-binding protein S4 insig. 92 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS05940 RNA-binding protein S4 insig. 92 100
o Pseudomonas fluorescens FW300-N2C3 AO356_05610 RNA-binding protein insig. 92 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4655 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 92 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3158 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 91 100
o Pseudomonas simiae WCS417 PS417_05870 RNA-binding protein S4 insig. 91 100
o Pseudomonas sp. RS175 PFR28_00484 Dual-specificity RNA pseudouridine synthase RluF insig. 89 100
o Pseudomonas syringae pv. syringae B728a Psyr_1390 RNA-binding S4 insig. 81 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1390 RNA-binding S4 insig. 81 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2980 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 90 90
o Pseudomonas putida KT2440 PP_1191 S4 domain protein insig. 56 100
o Lysobacter sp. OAE881 ABIE51_RS13020 rRNA pseudouridine synthase insig. 57 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1469.1 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 52 100
o Rhodanobacter sp. FW510-T8 OKGIIK_04535 rsuA RNA-binding protein insig. 51 100
o Rhodanobacter denitrificans MT42 LRK55_RS15640 rRNA pseudouridine synthase cofit 51 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS15885 rRNA pseudouridine synthase insig. 51 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS18320 rRNA pseudouridine synthase insig. 50 100
o Pseudomonas sp. S08-1 OH686_05400 Pseudouridine synthase insig. 50 100
o Pseudomonas stutzeri RCH2 Psest_2917 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases insig. 49 100
o Acidovorax sp. GW101-3H11 Ac3H11_1984 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 46 99
  Dechlorosoma suillum PS Dsui_2759 pseudouridine synthase family protein insig. 44 98
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF631 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 41 99
o Variovorax sp. OAS795 ABID97_RS06090 RNA pseudouridine synthase cofit 46 98
o Castellaniella sp019104865 MT123 ABCV34_RS03070 pseudouridine synthase insig. 38 99
o Burkholderia phytofirmans PsJN BPHYT_RS12155 RNA-binding protein S4 insig. 38 98
o Herbaspirillum seropedicae SmR1 HSERO_RS10860 RNA pseudouridylate synthase insig. 41 100
  Paraburkholderia graminis OAS925 ABIE53_002509 23S rRNA pseudouridine2604 synthase insig. 39 98
o Variovorax sp. SCN45 GFF4531 Pseudouridine synthase insig. 41 98
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00606 23S rRNA pseudouridine2604 synthase insig. 38 95
  Ralstonia solanacearum GMI1000 RS_RS07030 16S rRNA uridine-516 pseudouridylate synthase sig. 38 98
  Cupriavidus basilensis FW507-4G11 RR42_RS11890 16S rRNA pseudouridylate synthase insig. 38 98
  Acidovorax sp. GW101-3H11 Ac3H11_4641 tRNA pseudouridine synthase A (EC 4.2.1.70) sig. 37 98
  Ralstonia solanacearum PSI07 RPSI07_RS17115 16S rRNA uridine-516 pseudouridylate synthase cofit 40 98
  Variovorax sp. OAS795 ABID97_RS00980 pseudouridine synthase strong 36 100
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS00360 16S rRNA pseudouridylate synthase insig. 39 98
  Ralstonia solanacearum UW163 UW163_RS13690 16S rRNA pseudouridylate synthase insig. 39 98
  Variovorax sp. SCN45 GFF3530 Pseudouridine synthase insig. 35 100
  Ralstonia sp. UNC404CL21Col ABZR87_RS11810 pseudouridine synthase insig. 39 98
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF343 tRNA pseudouridine synthase A (EC 4.2.1.70) cofit 37 98
  Paraburkholderia sabiae LMG 24235 QEN71_RS06405 pseudouridine synthase cofit 40 98
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS07850 pseudouridine synthase insig. 30 99
o Caulobacter crescentus NA1000 CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 31 99
o Caulobacter crescentus NA1000 Δfur CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 31 99
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08925 23S rRNA pseudouridine synthase F insig. 29 98
  Vibrio cholerae E7946 ATCC 55056 CSW01_11335 23S rRNA pseudouridine(2604) synthase RluF insig. 28 99
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08930 hypothetical protein insig. 28 98
  Marinobacter adhaerens HP15 HP15_886 pseudouridine synthase family 1 protein insig. 28 98
  Lysobacter sp. OAE881 ABIE51_RS12720 pseudouridine synthase insig. 27 97
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1010 pseudouridine synthase insig. 25 98
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0719 pseudouridine synthase no data 27 97
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17510 pseudouridylate synthase strong 28 97
  Desulfovibrio vulgaris Miyazaki F DvMF_0369 pseudouridine synthase (RefSeq) sig. 28 97
  Rhodanobacter sp. FW510-T8 OKGIIK_16610 Pseudouridine synthase insig. 25 97
  Rhodanobacter denitrificans MT42 LRK55_RS06765 pseudouridine synthase insig. 25 97
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11165 pseudouridine synthase no data 24 99
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07025 pseudouridine synthase insig. 25 97
  Bacteroides thetaiotaomicron VPI-5482 BT3872 ribosomal large subunit pseudouridine synthase B (NCBI ptt file) no data 27 99
  Rhizobium sp. OAE497 ABIE40_RS15330 pseudouridine synthase cofit 27 97
  Phocaeicola dorei CL03T12C01 ABI39_RS08040 pseudouridine synthase no data 27 99
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS00420 pseudouridine synthase no data 27 99
  Rhodanobacter sp. FW510-T8 OKGIIK_06590 Pseudouridine synthase insig. 28 97
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1843.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) insig. 24 97
  Enterobacter sp. TBS_079 MPMX20_00237 Dual-specificity RNA pseudouridine synthase RluF insig. 25 99
  Alteromonas macleodii MIT1002 MIT1002_01776 Ribosomal large subunit pseudouridine synthase F insig. 25 98
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS16400 pseudouridine synthase cofit 24 97
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08410 pseudouridine synthase insig. 28 97
  Enterobacter asburiae PDN3 EX28DRAFT_4322 pseudouridine synthase insig. 25 99
  Mycobacterium tuberculosis H37Rv Rv1711 Conserved hypothetical protein no data 29 97
  Rhodanobacter denitrificans MT42 LRK55_RS00435 pseudouridine synthase insig. 28 97
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00665 rRNA pseudouridine synthase insig. 28 97
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1362 Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70) insig. 26 97
  Pantoea sp. MT58 IAI47_19435 23S rRNA pseudouridine(2604) synthase RluF insig. 25 99
  Bacteroides stercoris CC31F HMPREF1181_RS07005 pseudouridine synthase no data 25 99
  Escherichia coli BL21 ECD_03894 23S rRNA pseudouridine(2604) synthase cofit 25 97
  Escherichia coli BW25113 b4022 yjbC 23S rRNA pseudouridine synthase (NCBI) sig. 25 97
  Erwinia tracheiphila SCR3 LU632_RS22175 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 26 97
  Klebsiella michiganensis M5al BWI76_RS01755 23S rRNA pseudouridine synthase F insig. 26 97
  Rahnella sp. WP5 EX31_RS06075 23S rRNA pseudouridine(2604) synthase RluF insig. 24 97
  Fusobacterium nucleatum SB010 HUW76_04625 rRNA pseudouridine synthase cofit 23 97
  Vibrio cholerae E7946 ATCC 55056 CSW01_08220 16S rRNA pseudouridine(516) synthase insig. 25 97
  Bifidobacterium breve UCC2003 BBR_RS15700 rRNA pseudouridine synthase no data 24 99
  Pseudomonas putida KT2440 PP_1409 ribosomal small subunit pseudouridine synthase A insig. 24 97
  Dechlorosoma suillum PS Dsui_0824 pseudouridine synthase family protein insig. 22 92
  Escherichia coli ECOR38 HEPCGN_11820 rluF 23S rRNA pseudouridine(2604) synthase RluF cofit 25 97
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04027 23S rRNA pseudouridine(2604) synthase insig. 25 97
  Escherichia coli ECRC101 OKFHMN_13190 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 25 97
  Escherichia coli ECRC101 MCAODC_03690 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 25 97
  Escherichia coli ECRC102 NIAGMN_10940 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 25 97
  Escherichia coli ECRC62 BNILDI_06155 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 25 97
  Escherichia coli ECRC98 JDDGAC_16815 rluF 23S rRNA pseudouridine(2604) synthase RluF no data 25 97
  Escherichia coli ECRC99 KEDOAH_14970 rluF 23S rRNA pseudouridine(2604) synthase RluF no data 25 97
  Lysobacter sp. OAE881 ABIE51_RS18480 pseudouridine synthase cofit 27 97
  Escherichia coli ECOR27 NOLOHH_05365 rluF 23S rRNA pseudouridine(2604) synthase RluF cofit 25 97
  Shewanella loihica PV-4 Shew_2975 pseudouridine synthase (RefSeq) insig. 26 97
  Escherichia fergusonii Becca EFB2_04580 Dual-specificity RNA pseudouridine synthase RluF insig. 25 97
  Escherichia coli Nissle 1917 ECOLIN_RS23225 23S rRNA pseudouridine(2604) synthase RluF insig. 25 97
  Shewanella amazonensis SB2B Sama_2937 pseudouridine synthase, Rsu (RefSeq) insig. 27 97
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS25065 pseudouridylate synthase no data 26 97
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18660 pseudouridine synthase no data 24 97