Homologs of yebU from Shewanella loihica PV-4

yebU: rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq)
KEGG: ribosomal RNA small subunit methyltransferase F

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella loihica PV-4 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) insig. 100 100
o Shewanella oneidensis MR-1 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) insig. 68 97
o Shewanella sp. ANA-3 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) insig. 66 97
o Shewanella amazonensis SB2B Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) sig. 63 97
o Enterobacter sp. TBS_079 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F insig. 56 93
o Vibrio cholerae E7946 ATCC 55056 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF cofit 53 96
o Escherichia coli ECOR27 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF no data 54 95
o Escherichia coli BL21 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent no data 54 95
o Escherichia coli ECRC62 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 54 95
o Rahnella sp. WP5 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF sig. 53 98
o Escherichia coli ECOR38 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 54 95
o Enterobacter asburiae PDN3 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase insig. 55 96
o Escherichia coli ECRC101 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 54 96
o Escherichia coli ECRC100 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF no data 53 96
o Escherichia coli ECRC102 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF no data 53 96
o Escherichia coli ECRC98 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 53 96
o Escherichia coli ECRC99 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF no data 53 96
o Escherichia coli BW25113 b1835 yebU putative nucleolar proteins (VIMSS) strong 53 95
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F insig. 53 96
o Dickeya dianthicola 67-19 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 54 96
o Escherichia coli Nissle 1917 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF no data 53 95
o Dickeya dadantii 3937 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 54 96
o Serratia liquefaciens MT49 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 54 96
o Dickeya dianthicola ME23 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 54 96
o Escherichia fergusonii Becca EFB2_02166 Ribosomal RNA small subunit methyltransferase F insig. 53 95
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS02510 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF cofit 54 95
o Pectobacterium carotovorum WPP14 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 52 98
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) sig. 53 96
o Pantoea sp. MT58 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF strong 54 95
o Klebsiella michiganensis M5al BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF sig. 54 96
o Klebsiella pneumoniae MKP103 KDGMDA_25270 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 54 93
o Erwinia amylovora T8 OLJFJH_12985 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF insig. 50 95
o Kangiella aquimarina DSM 16071 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase insig. 47 96
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05610 rRNA methyltransferase strong 32 83
o Bacteroides thetaiotaomicron VPI-5482 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) sig. 28 88
o Bacteroides stercoris CC31F HMPREF1181_RS08100 rRNA cytosine-C5-methyltransferase insig. 30 83
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS00225 RNA methyltransferase strong 29 83
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS16740 rRNA cytosine-C5-methyltransferase insig. 31 83
o Bacteroides ovatus ATCC 8483 BACOVA_00671 NOL1/NOP2/sun family protein sig. 28 88
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1153 tRNA and rRNA cytosine-C5-methylases insig. 26 93
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase strong 28 83
o Phocaeicola dorei CL03T12C01 ABI39_RS09930 rRNA cytosine-C5-methyltransferase sig. 28 83
  Desulfovibrio vulgaris Miyazaki F DvMF_2026 Fmu (Sun) domain protein (RefSeq) insig. 31 72
  Methanococcus maripaludis S2 MMP_RS05815 NOL1/NOP2/sun family putative RNA methylase strong 36 56
  Methanococcus maripaludis JJ MMJJ_RS08535 NOL1/NOP2/sun family putative RNA methylase strong 35 56
  Desulfovibrio vulgaris Hildenborough JW710 DVU3189 NOL1/NOP2/sun family protein (TIGR) insig. 34 57
  Synechococcus elongatus PCC 7942 Synpcc7942_0962 sun sun protein sig. 28 63
  Acidovorax sp. GW101-3H11 Ac3H11_1706 Fmu (Sun) /eukaryotic nucleolar NOL1/Nop2p; tRNA and rRNA cytosine-C5-methylases insig. 30 63
  Magnetospirillum magneticum AMB-1 AMB_RS19160 methyltransferase domain-containing protein cofit 31 56
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase insig. 35 45
  Fusobacterium nucleatum SB010 HUW76_07955 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB strong 35 45
  Bosea sp. OAE506 ABIE41_RS05105 RsmB/NOP family class I SAM-dependent RNA methyltransferase insig. 33 45
  Synechocystis sp000284455 PCC 6803 SGL_RS03855 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 33 45
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF769 Fmu (Sun) /eukaryotic nucleolar NOL1/Nop2p; tRNA and rRNA cytosine-C5-methylases insig. 30 61
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04755 SAM-dependent methyltransferase strong 31 56
  Ralstonia solanacearum UW163 UW163_RS08915 SAM-dependent methyltransferase insig. 31 56
  Ralstonia solanacearum GMI1000 RS_RS12315 SAM-dependent methyltransferase sig. 31 56
  Rhodospirillum rubrum S1H Rru_A0243 tRNA/rRNA cytosine-C5-methylase (NCBI) cofit 34 40
  Ralstonia solanacearum PSI07 RPSI07_RS12630 SAM-dependent methyltransferase insig. 32 56
  Rhizobium sp. OAE497 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase insig. 34 45
  Cellulophaga baltica 18 M666_RS18250 methyltransferase domain-containing protein insig. 31 45
  Dickeya dianthicola 67-19 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 30 56
  Dickeya dianthicola ME23 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 29 56
  Rhodanobacter sp. FW510-T8 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 29 56
  Dinoroseobacter shibae DFL-12 Dshi_3033 Fmu (Sun) domain protein (RefSeq) sig. 34 49
  Agrobacterium fabrum C58 Atu2825 Sun protein sig. 30 51
  Sinorhizobium meliloti 1021 SMc04090 sun protein insig. 32 46
  Methylophilus sp. DMC18 GFF2298 Ribosomal RNA small subunit methyltransferase B insig. 28 56
  Caulobacter crescentus NA1000 CCNA_00101 16S rRNA m5C methyltransferase RsmB sig. 34 45
  Caulobacter crescentus NA1000 Δfur CCNA_00101 16S rRNA m5C methyltransferase RsmB cofit 34 45
  Dechlorosoma suillum PS Dsui_1543 tRNA/rRNA cytosine-C5-methylase sig. 29 62
  Azospirillum sp. SherDot2 MPMX19_01594 Ribosomal RNA small subunit methyltransferase B insig. 29 58
  Dickeya dadantii 3937 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 29 56
  Ralstonia sp. UNC404CL21Col ABZR87_RS00375 RsmB/NOP family class I SAM-dependent RNA methyltransferase sig. 30 56
  Phaeobacter inhibens DSM 17395 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B sig. 30 48
  Xanthobacter sp. DMC5 GFF12 Ribosomal RNA small subunit methyltransferase B insig. 29 56
  Rhodopseudomonas palustris CGA009 TX73_000155 transcription antitermination factor NusB insig. 32 45
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4741.1 hypothetical protein insig. 28 56
  Paraburkholderia graminis OAS925 ABIE53_003297 16S rRNA (cytosine967-C5)-methyltransferase insig. 28 56
  Paraburkholderia sabiae LMG 24235 QEN71_RS03045 RsmB/NOP family class I SAM-dependent RNA methyltransferase strong 27 63
  Ralstonia solanacearum PSI07 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 27 56
  Vibrio cholerae E7946 ATCC 55056 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 32 44
  Cupriavidus basilensis FW507-4G11 RR42_RS17045 SAM-dependent methyltransferase sig. 28 57
  Pseudomonas aeruginosa PA14 IKLFDK_25475 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB strong 28 57
  Herbaspirillum seropedicae SmR1 HSERO_RS05915 SAM-dependent methyltransferase sig. 28 59
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04074 16S rRNA (cytosine967-C5)-methyltransferase insig. 28 56
  Magnetospirillum magneticum AMB-1 AMB_RS00745 MFS transporter insig. 35 41
  Rahnella sp. WP5 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 28 56
  Burkholderia phytofirmans PsJN BPHYT_RS15665 SAM-dependent methyltransferase no data 29 56
  Variovorax sp. OAS795 ABID97_RS07795 RsmB/NOP family class I SAM-dependent RNA methyltransferase insig. 27 57
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 cofit 28 56
  Marinobacter adhaerens HP15 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase strong 26 56
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 31 39
  Ralstonia solanacearum UW163 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 31 39
  Shewanella sp. ANA-3 Shewana3_0033 sun protein (RefSeq) strong 29 45
  Shewanella loihica PV-4 Shew_3738 sun protein (RefSeq) strong 29 45
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_12470 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB cofit 28 56
  Shewanella amazonensis SB2B Sama_1664 tRNA and rRNA cytosine-C5-methylase (RefSeq) insig. 28 56
  Erwinia tracheiphila SCR3 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB insig. 28 56
  Pseudomonas stutzeri RCH2 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB sig. 27 58