Homologs of SO2104 from Shewanella oneidensis MR-1

DNA-binding response regulator YgiX, putative (NCBI ptt file)
SEED: Two-component system response regulator QseB
KEGG: two-component system, OmpR family, response regulator

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO2104 DNA-binding response regulator YgiX, putative (NCBI ptt file) insig. 100 100
o Shewanella sp. ANA-3 Shewana3_1885 two component transcriptional regulator (RefSeq) insig. 95 100
o Pseudomonas fluorescens SBW25 PFLU_RS15245 response regulator insig. 47 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS15245 response regulator insig. 47 99
o Pseudomonas simiae WCS417 PS417_13595 XRE family transcriptional regulator insig. 46 99
o Pseudomonas stutzeri RCH2 Psest_3476 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain insig. 48 97
o Pseudomonas sp. SVBP6 COO64_RS20755 response regulator insig. 46 97
o Pseudomonas fluorescens GW456-L13 PfGW456L13_3169 Two-component system response regulator QseB insig. 45 99
o Rahnella sp. WP5 EX31_RS08605 two-component system response regulator PmrA insig. 44 98
o Pseudomonas sp. RS175 PFR28_02328 Transcriptional regulatory protein QseB sig. 44 100
o Dickeya dianthicola ME23 DZA65_RS22325 response regulator insig. 42 100
o Pseudomonas sp. DMC3 GFF3603 Transcriptional regulatory protein QseB cofit 45 99
o Pseudomonas fluorescens FW300-N2C3 AO356_02865 transcriptional regulator strong 47 98
o Pseudomonas sp. BP01 JOY50_RS18885 response regulator transcription factor insig. 47 98
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2299 Two-component system response regulator QseB sig. 46 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2397 Two-component system response regulator QseB sig. 47 98
  Pseudomonas fluorescens FW300-N2C3 AO356_23845 XRE family transcriptional regulator insig. 44 99
o Paraburkholderia graminis OAS925 ABIE53_003418 two-component system response regulator QseB strong 44 99
o Pseudomonas sp. S08-1 OH686_04665 Two-component system response regulator QseB insig. 45 99
o Burkholderia phytofirmans PsJN BPHYT_RS16220 transcriptional regulator no data 44 99
o Dechlorosoma suillum PS Dsui_3448 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain cofit 48 98
o Dickeya dianthicola 67-19 HGI48_RS21345 response regulator insig. 42 100
o Enterobacter sp. TBS_079 MPMX20_03863 Transcriptional regulatory protein QseB insig. 44 98
o Enterobacter asburiae PDN3 EX28DRAFT_3057 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain insig. 45 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4454 Two-component system response regulator QseB no data 44 99
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1539 Two-component system response regulator QseB insig. 44 99
o Pseudomonas putida KT2440 PP_4225 two component system DNA-binding transcriptional activator QseB sig. 46 98
o Pseudomonas fluorescens FW300-N2E3 AO353_19370 transcriptional regulator strong 46 98
o Escherichia coli ECOR27 NOLOHH_10660 Transcriptional regulatory protein QseB insig. 44 99
o Escherichia coli ECRC100 OKFHMN_18880 Transcriptional regulatory protein QseB cofit 44 99
o Escherichia coli ECRC101 MCAODC_09395 Transcriptional regulatory protein QseB insig. 44 99
o Escherichia coli ECRC102 NIAGMN_16645 Transcriptional regulatory protein QseB insig. 44 99
o Escherichia coli ECRC62 BNILDI_00855 Transcriptional regulatory protein QseB cofit 44 99
o Escherichia coli ECRC98 JDDGAC_22515 Transcriptional regulatory protein QseB cofit 44 99
o Escherichia coli ECRC99 KEDOAH_09265 Transcriptional regulatory protein QseB no data 44 99
o Escherichia coli Nissle 1917 ECOLIN_RS17425 quorum sensing response regulator transcription factor QseB insig. 44 99
o Escherichia coli BW25113 b3025 qseB DNA-binding response regulator in two-component regulatory system with QseC (NCBI) insig. 44 99
  Pseudomonas putida KT2440 PP_2713 DNA-binding response regulator sig. 47 100
  Enterobacter asburiae PDN3 EX28DRAFT_3235 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain insig. 44 98
o Escherichia coli BL21 ECD_02897 quorum sensing DNA-binding response regulator in two-component regulatory system with QseC insig. 44 99
o Escherichia fergusonii Becca EFB2_00788 Transcriptional regulatory protein QseB insig. 44 99
o Escherichia coli ECOR38 HEPCGN_17740 Quorum sensing DNA-binding response regulator in two-component regulatory system with QseC insig. 44 99
  Pseudomonas sp. SVBP6 COO64_RS18770 response regulator transcription factor insig. 47 98
  Pseudomonas sp. RS175 PFR28_01030 Transcriptional regulatory protein QseB insig. 45 98
  Pseudomonas simiae WCS417 PS417_19520 transcriptional regulator insig. 45 100
  Pseudomonas fluorescens SBW25 PFLU_RS21485 response regulator insig. 46 98
  Pseudomonas fluorescens SBW25-INTG PFLU_RS21485 response regulator sig. 46 98
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00677 Transcriptional regulatory protein QseB insig. 44 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04180 two component transcriptional regulator, winged helix family sig. 43 99
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_208 Two-component system response regulator QseB sig. 45 98
  Pseudomonas stutzeri RCH2 Psest_1602 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain insig. 46 98
o Paraburkholderia sabiae LMG 24235 QEN71_RS02475 response regulator cofit 44 99
o Erwinia tracheiphila SCR3 LU632_RS21175 pmrA two-component system response regulator PmrA insig. 43 99
o Alteromonas macleodii MIT1002 MIT1002_00810 Transcriptional regulatory protein BasR cofit 43 99
o Klebsiella michiganensis M5al BWI76_RS24335 two-component system response regulator QseB insig. 43 100
  Pseudomonas sp. DMC3 GFF4547 Transcriptional regulatory protein QseB cofit 45 98
o Pantoea sp. MT58 IAI47_00340 response regulator insig. 42 98
o Pseudomonas aeruginosa PA14 IKLFDK_29710 two-component system response regulator PrmA insig. 47 99
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS00905 response regulator insig. 46 98
o Rhodanobacter denitrificans MT42 LRK55_RS07340 response regulator insig. 46 98
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS07600 response regulator sig. 46 98
  Pseudomonas sp. BP01 JOY50_RS03360 response regulator insig. 46 97
o Erwinia amylovora T8 OLJFJH_07175 two-component system response regulator PmrA insig. 42 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3138 Two-component system response regulator QseB insig. 43 98
o Rhodanobacter sp. FW510-T8 OKGIIK_14050 ompR DNA-binding response regulator insig. 46 98
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS01270 response regulator insig. 42 99
o Marinobacter adhaerens HP15 HP15_3968 two component transcriptional regulator, winged helix family strong 44 97
o Vibrio cholerae E7946 ATCC 55056 CSW01_19595 DNA-binding response regulator insig. 42 98
  Rahnella sp. WP5 EX31_RS03275 response regulator insig. 41 98
  Dechlorosoma suillum PS Dsui_2248 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain insig. 46 100
o Variovorax sp. SCN45 GFF3532 Two-component system response regulator QseB insig. 43 97
  Burkholderia phytofirmans PsJN BPHYT_RS23615 XRE family transcriptional regulator insig. 43 98
o Pectobacterium carotovorum WPP14 HER17_RS21560 response regulator insig. 43 100
  Enterobacter sp. TBS_079 MPMX20_04087 Transcriptional regulatory protein BasR strong 42 98
o Herbaspirillum seropedicae SmR1 HSERO_RS21985 transcriptional regulator insig. 42 97
o Acinetobacter radioresistens SK82 MPMX26_03163 Transcriptional regulatory protein QseB cofit 41 98
o Cupriavidus basilensis FW507-4G11 RR42_RS37390 XRE family transcriptional regulator insig. 42 100
  Pseudomonas aeruginosa PA14 IKLFDK_12175 DNA-binding response regulator insig. 46 98
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS20365 response regulator transcription factor insig. 43 98
  Dickeya dianthicola 67-19 HGI48_RS19450 two-component system response regulator PmrA insig. 41 99
  Pantoea sp. MT58 IAI47_17605 response regulator insig. 40 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS11495 response regulator transcription factor insig. 44 98
  Dickeya dianthicola ME23 DZA65_RS20570 two-component system response regulator PmrA insig. 40 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3523 Two-component system response regulator QseB insig. 40 99
  Cupriavidus basilensis FW507-4G11 RR42_RS35490 XRE family transcriptional regulator insig. 41 99
  Klebsiella michiganensis M5al BWI76_RS08795 DNA-binding response regulator sig. 41 99
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2498 Response regulator receiver:Transcriptional regulatory protein, C- terminal strong 43 100
  Paraburkholderia graminis OAS925 ABIE53_006118 two-component system response regulator QseB sig. 42 98
o Methylophilus sp. DMC18 GFF801 Transcriptional regulatory protein QseB insig. 41 98
  Paraburkholderia graminis OAS925 ABIE53_001032 two-component system response regulator QseB insig. 42 98
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01148 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain insig. 42 98
o Dickeya dadantii 3937 DDA3937_RS19350 two-component system response regulator PmrA insig. 40 99
  Paraburkholderia sabiae LMG 24235 QEN71_RS21460 response regulator insig. 42 98
o Azospirillum sp. SherDot2 MPMX19_00295 Transcriptional regulatory protein QseB insig. 44 100
o Acidovorax sp. GW101-3H11 Ac3H11_1263 Response regulator receiver:Transcriptional regulatory protein, C- terminal cofit 42 100
o Pseudomonas syringae pv. syringae B728a Psyr_3511 Response regulator receiver:Transcriptional regulatory protein, C-terminal insig. 44 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3511 Response regulator receiver:Transcriptional regulatory protein, C-terminal insig. 44 98
  Paraburkholderia sabiae LMG 24235 QEN71_RS08945 response regulator transcription factor insig. 41 98
  Acidovorax sp. GW101-3H11 Ac3H11_2178 Two-component system response regulator QseB insig. 43 97
  Burkholderia phytofirmans PsJN BPHYT_RS10895 transcriptional regulator insig. 42 98