Homologs of rpoS from Escherichia coli BW25113

rpoS: RNA polymerase sigma factor (NCBI)
SEED: RNA polymerase sigma factor RpoS
KEGG: RNA polymerase nonessential primary-like sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Escherichia coli BW25113 b2741 rpoS RNA polymerase sigma factor (NCBI) strong 100 100
o Escherichia coli BL21 ECD_02591 RNA polymerase, sigma S (sigma 38) factor cofit 100 100
o Escherichia fergusonii Becca EFB2_01169 RNA polymerase sigma factor RpoS cofit 100 100
o Escherichia coli ECOR27 NOLOHH_12310 rpoS RNA polymerase sigma factor RpoS strong 100 100
o Escherichia coli ECOR38 HEPCGN_19675 rpoS RNA polymerase sigma factor RpoS strong 100 100
o Escherichia coli ECRC101 MCAODC_11020 rpoS RNA polymerase sigma factor RpoS strong 100 100
o Escherichia coli ECRC102 NIAGMN_18265 rpoS RNA polymerase sigma factor RpoS strong 100 100
o Escherichia coli ECRC62 BNILDI_10860 rpoS RNA polymerase sigma factor RpoS strong 100 100
o Escherichia coli ECRC98 JDDGAC_24160 rpoS RNA polymerase sigma factor RpoS strong 100 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00992 RNA polymerase sigma factor RpoS insig. 100 100
o Enterobacter asburiae PDN3 EX28DRAFT_2837 RNA polymerase, sigma 38 subunit, RpoS strong 99 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4788 RNA polymerase sigma factor RpoS strong 99 100
o Klebsiella michiganensis M5al BWI76_RS22645 RNA polymerase sigma factor RpoS strong 98 100
o Enterobacter sp. TBS_079 MPMX20_03627 RNA polymerase sigma factor RpoS strong 98 100
o Klebsiella pneumoniae MKP103 KDGMDA_03220 RNA polymerase sigma factor RpoS strong 98 100
o Erwinia amylovora T8 OLJFJH_09380 RNA polymerase sigma factor RpoS sig. 95 100
o Pantoea sp. MT58 IAI47_04235 RNA polymerase sigma factor RpoS strong 95 100
o Serratia liquefaciens MT49 IAI46_03790 RNA polymerase sigma factor RpoS cofit 94 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_17500 rpoS RNA polymerase sigma factor RpoS strong 93 100
o Erwinia tracheiphila SCR3 LU632_RS06480 rpoS RNA polymerase sigma factor RpoS strong 93 100
o Dickeya dianthicola ME23 DZA65_RS18020 RNA polymerase sigma factor RpoS sig. 93 100
o Dickeya dadantii 3937 DDA3937_RS16875 RNA polymerase sigma factor RpoS no data 92 100
o Dickeya dianthicola 67-19 HGI48_RS16945 RNA polymerase sigma factor RpoS insig. 92 100
o Escherichia coli ECRC100 OKFHMN_20495 rpoS RNA polymerase sigma factor RpoS cofit 100 93
o Pectobacterium carotovorum WPP14 HER17_RS04350 RNA polymerase sigma factor RpoS strong 92 100
o Rahnella sp. WP5 EX31_RS07825 RNA polymerase sigma factor RpoS strong 93 100
  Escherichia coli ECRC99 KEDOAH_07640 rpoS RNA polymerase sigma factor RpoS no data 100 72
o Shewanella loihica PV-4 Shew_1213 RpoD family RNA polymerase sigma factor (RefSeq) insig. 80 88
o Alteromonas macleodii MIT1002 MIT1002_00625 RNA polymerase sigma factor RpoS strong 75 94
o Vibrio cholerae E7946 ATCC 55056 CSW01_02835 RNA polymerase sigma factor RpoS cofit 73 96
o Shewanella amazonensis SB2B Sama_1044 RNA polymerase sigma-38 factor (RefSeq) sig. 80 85
o Shewanella oneidensis MR-1 SO3432 rpoS RNA polymerase sigma-38 factor (NCBI ptt file) sig. 80 85
o Shewanella sp. ANA-3 Shewana3_1124 RNA polymerase, sigma 38 subunit, RpoS (RefSeq) sig. 80 85
o Pseudomonas sp. S08-1 OH686_18185 RNA polymerase sigma factor RpoS cofit 67 96
o Pseudomonas segetis P6 MPMX49_03428 RNA polymerase sigma factor RpoS strong 77 84
o Pseudomonas aeruginosa PA14 IKLFDK_18495 RNA polymerase sigma factor RpoS sig. 76 84
o Pseudomonas fluorescens SBW25 PFLU_RS06430 RNA polymerase sigma factor RpoS cofit 76 84
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06430 RNA polymerase sigma factor RpoS strong 76 84
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01443 RNA polymerase sigma factor RpoS cofit 76 84
o Pseudomonas sp. SVBP6 COO64_RS19795 rpoS RNA polymerase sigma factor RpoS insig. 76 84
o Pseudomonas simiae WCS417 PS417_06365 RNA polymerase sigma factor strong 76 84
o Marinobacter adhaerens HP15 HP15_1283 RNA polymerase, sigma 70 subunit, RpoD family strong 71 91
o Pseudomonas sp. RS175 PFR28_00427 RNA polymerase sigma factor RpoS strong 76 84
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4674 RNA polymerase sigma factor RpoS strong 76 84
o Pseudomonas sp. BP01 JOY50_RS23755 rpoS RNA polymerase sigma factor RpoS insig. 76 84
o Pseudomonas putida KT2440 PP_1623 RNA polymerase, sigma S (sigma 38) factor strong 76 84
o Pseudomonas fluorescens FW300-N2E3 AO353_16615 RNA polymerase sigma factor RpoS strong 76 84
o Pseudomonas fluorescens FW300-N2C3 AO356_05885 RNA polymerase sigma factor RpoS strong 76 84
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3037 RNA polymerase sigma factor RpoS strong 76 84
o Pseudomonas sp. DMC3 GFF2084 RNA polymerase sigma factor RpoS strong 76 84
o Pseudomonas syringae pv. syringae B728a Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS sig. 76 84
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS cofit 76 84
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3115 RNA polymerase sigma factor RpoS strong 76 84
o Pseudomonas stutzeri RCH2 Psest_2806 RNA polymerase sigma factor RpoS strong 75 84
o Dechlorosoma suillum PS Dsui_1971 RNA polymerase sigma factor RpoS cofit 55 83
o Herbaspirillum seropedicae SmR1 HSERO_RS14830 RNA polymerase sigma factor RpoS insig. 54 83
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15235 RNA polymerase sigma factor RpoS strong 54 83
  Ralstonia solanacearum UW163 UW163_RS12700 RNA polymerase sigma factor RpoS sig. 54 83
  Ralstonia solanacearum PSI07 RPSI07_RS18140 RNA polymerase sigma factor RpoS strong 53 83
  Ralstonia solanacearum GMI1000 RS_RS06045 RNA polymerase sigma factor RpoS strong 53 83
  Cupriavidus basilensis FW507-4G11 RR42_RS13185 RNA polymerase sigma factor RpoS strong 51 84
  Ralstonia sp. UNC404CL21Col ABZR87_RS10875 RNA polymerase sigma factor RpoS strong 53 83
  Burkholderia phytofirmans PsJN BPHYT_RS09115 RNA polymerase sigma factor RpoS sig. 51 83
  Paraburkholderia graminis OAS925 ABIE53_002057 RNA polymerase nonessential primary-like sigma factor strong 51 83
  Paraburkholderia sabiae LMG 24235 QEN71_RS22240 RNA polymerase sigma factor RpoS cofit 51 83
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00844 RNA polymerase, sigma 38 subunit, RpoS no data 51 83
  Fusobacterium nucleatum SB010 HUW76_03650 RNA polymerase sigma factor RpoD no data 43 85
o Synechococcus elongatus PCC 7942 Synpcc7942_1557 rpoD6 principal RNA polymerase sigma factor SigA strong 41 81
  Desulfovibrio vulgaris Hildenborough JW710 DVU1788 rpoD RNA polymerase sigma-70 factor (TIGR) no data 43 75
  Desulfovibrio vulgaris Miyazaki F DvMF_0494 RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) no data 43 75
o Variovorax sp. SCN45 GFF2842 RNA polymerase sigma factor RpoS insig. 47 83
  Synechococcus elongatus PCC 7942 Synpcc7942_0569 rpoD4 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like strong 42 82
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3437 RNA polymerase sigma factor, sigma-70 family no data 42 84
  Dinoroseobacter shibae DFL-12 Dshi_2261 RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) no data 43 68
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04885 RNA polymerase subunit sigma no data 42 84
  Phaeobacter inhibens DSM 17395 PGA1_c08800 RNA polymerase sigma factor RpoD no data 43 68
  Rhodospirillum rubrum S1H Rru_A2882 Sigma 70 (RpoD) (NCBI) no data 42 71
  Magnetospirillum magneticum AMB-1 AMB_RS03585 RNA polymerase sigma factor RpoD no data 42 72
o Variovorax sp. OAS795 ABID97_RS10730 sigma-70 family RNA polymerase sigma factor insig. 45 88
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10595 RNA polymerase sigma factor RpoD no data 43 68
  Shewanella amazonensis SB2B Sama_0823 RNA polymerase sigma-70 factor (RefSeq) no data 44 71
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4238 RNA polymerase sigma factor RpoD, C-terminal domain no data 43 68
  Rhizobium sp. OAE497 ABIE40_RS12720 RNA polymerase sigma factor RpoD no data 41 72
  Sphingobium sp. HT1-2 GFF2093 RNA polymerase sigma factor RpoD no data 43 68
  Bosea sp. OAE506 ABIE41_RS11995 RNA polymerase sigma factor RpoD no data 42 71
  Caulobacter crescentus NA1000 CCNA_03142 RNA polymerase sigma factor rpoD no data 43 68
  Caulobacter crescentus NA1000 Δfur CCNA_03142 RNA polymerase sigma factor rpoD no data 43 68
  Sinorhizobium meliloti 1021 SMc01563 RNA polymerase sigma factor RpoD no data 43 68
  Xanthobacter sp. DMC5 GFF3244 RNA polymerase sigma factor RpoD no data 42 71
  Agrobacterium fabrum C58 Atu2167 RNA polymerase sigma factor RpoD no data 43 68
  Pseudomonas aeruginosa PA14 IKLFDK_22530 RNA polymerase sigma factor RpoD no data 42 71
  Azospirillum sp. SherDot2 MPMX19_00761 RNA polymerase sigma factor RpoD no data 42 71
  Kangiella aquimarina DSM 16071 B158DRAFT_0818 RNA polymerase sigma factor, sigma-70 family no data 42 71
  Azospirillum brasilense Sp245 AZOBR_RS10905 RNA polymerase sigma factor RpoD no data 42 71
  Bifidobacterium breve UCC2003 BBR_RS16480 RNA polymerase sigma factor no data 38 87
  Shewanella sp. ANA-3 Shewana3_3087 RNA polymerase, sigma 70 subunit, RpoD (RefSeq) no data 43 71
  Shewanella oneidensis MR-1 SO1284 rpoD RNA polymerase sigma-70 factor (NCBI ptt file) no data 43 71
  Pseudomonas syringae pv. syringae B728a Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 42 73
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 42 73
  Pseudomonas stutzeri RCH2 Psest_3682 RNA polymerase sigma factor, sigma-70 family no data 42 73