Conservation of cofitness between Xcc-8004.4605.1 and Xcc-8004.3431.1 in Xanthomonas campestris pv. campestris strain 8004

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4605.1 FIG001943: hypothetical protein YajQ 1.0 Xcc-8004.3431.1 DNA repair protein RecN 0.33 14
Lysobacter sp. OAE881 0.81 ABIE51_RS18465 YajQ family cyclic di-GMP-binding protein 0.62 ABIE51_RS11655 DNA repair protein RecN low > 62
Rhodanobacter sp. FW510-T8 0.79 OKGIIK_03500 yajQ YajQ family cyclic di-GMP-binding protein 0.43 OKGIIK_07340 recN DNA repair protein RecN low > 52
Rhodanobacter denitrificans FW104-10B01 0.78 LRK54_RS14675 YajQ family cyclic di-GMP-binding protein 0.44 LRK54_RS17960 DNA repair protein RecN low > 59
Rhodanobacter denitrificans MT42 0.78 LRK55_RS14390 YajQ family cyclic di-GMP-binding protein 0.44 LRK55_RS17815 DNA repair protein RecN low > 63
Castellaniella sp019104865 MT123 0.77 ABCV34_RS15080 YajQ family cyclic di-GMP-binding protein 0.29 ABCV34_RS07470 DNA repair protein RecN low > 48
Dyella japonica UNC79MFTsu3.2 0.77 ABZR86_RS00410 YajQ family cyclic di-GMP-binding protein 0.43 ABZR86_RS05665 DNA repair protein RecN low > 74
Marinobacter adhaerens HP15 0.53 HP15_2364 nucleotide-binding protein 0.32 HP15_3084 DNA repair protein RecN low > 73
Pseudomonas stutzeri RCH2 0.53 Psest_1142 Uncharacterized protein conserved in bacteria 0.37 Psest_0962 DNA repair protein RecN low > 67
Pseudomonas sp. RS175 0.53 PFR28_03425 hypothetical protein 0.38 PFR28_00071 DNA repair protein RecN low > 88
Pseudomonas simiae WCS417 0.52 PS417_22510 nucleotide-binding protein 0.38 PS417_24070 recombination and repair protein — —
Pseudomonas sp. S08-1 0.52 OH686_08210 UPF0234 protein Yitk 0.37 OH686_17050 DNA repair protein RecN low > 80
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_4087 Protein of unknown function DUF520 0.38 Psyr_4197 DNA replication and repair protein RecN 0.36 9
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_1840 FIG001943: hypothetical protein YajQ 0.39 PfGW456L13_5106 DNA repair protein RecN — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_4087 Protein of unknown function DUF520 0.38 Psyr_4197 DNA replication and repair protein RecN — —
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_650 FIG001943: hypothetical protein YajQ 0.39 Pf1N1B4_1178 DNA repair protein RecN low > 87
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS24150 YajQ family cyclic di-GMP-binding protein 0.37 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_03640 nucleotide-binding protein 0.39 AO353_05660 DNA repair protein RecN low > 101
Pseudomonas fluorescens SBW25 0.52 PFLU_RS24150 YajQ family cyclic di-GMP-binding protein 0.37 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_17960 nucleotide-binding protein 0.38 AO356_07510 DNA repair protein RecN low > 104
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_5522 FIG001943: hypothetical protein YajQ 0.39 Pf6N2E2_3370 DNA repair protein RecN low > 103
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_0029 Uncharacterized protein conserved in bacteria 0.35 B158DRAFT_0601 DNA replication and repair protein RecN low > 40
Pseudomonas putida KT2440 0.50 PP_1352 UPF0234 protein PP_1352 0.37 PP_4729 factor used in recombination and DNA repair low > 96
Escherichia coli ECOR38 0.50 HEPCGN_07020 yajQ nucleotide binding protein YajQ 0.31 HEPCGN_20265 recN DNA repair protein RecN low > 87
Escherichia fergusonii Becca 0.50 EFB2_03631 hypothetical protein 0.30 EFB2_01277 DNA repair protein RecN low > 86
Escherichia coli ECRC99 0.50 KEDOAH_19575 yajQ nucleotide binding protein YajQ 0.30 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECOR27 0.50 NOLOHH_01340 yajQ nucleotide binding protein YajQ 0.31 NOLOHH_12815 recN DNA repair protein RecN low > 75
Escherichia coli ECRC100 0.50 OKFHMN_08390 yajQ nucleotide binding protein YajQ 0.30 OKFHMN_21145 recN DNA repair protein RecN — —
Escherichia coli ECRC102 0.50 NIAGMN_06445 yajQ nucleotide binding protein YajQ 0.30 NIAGMN_18915 recN DNA repair protein RecN — —
Escherichia coli BL21 0.50 ECD_00374 phage Phi6 host factor, ATP/GTP binding protein 0.31 ECD_02504 recombination and repair protein low > 61
Escherichia coli ECRC101 0.50 MCAODC_27615 yajQ nucleotide binding protein YajQ 0.30 MCAODC_11670 recN DNA repair protein RecN low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03250 hypothetical protein 0.31 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli BW25113 0.50 b0426 yajQ orf, hypothetical protein (VIMSS) 0.31 b2616 recN recombination and repair protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.50 ECOLIN_RS02565 nucleotide binding protein YajQ 0.31 ECOLIN_RS14775 DNA repair protein RecN — —
Escherichia coli ECRC98 0.50 JDDGAC_12045 yajQ nucleotide binding protein YajQ 0.30 JDDGAC_24810 recN DNA repair protein RecN low > 86
Escherichia coli ECRC62 0.50 BNILDI_22755 yajQ nucleotide binding protein YajQ 0.31 BNILDI_11620 recN DNA repair protein RecN low > 75
Pantoea sp. MT58 0.49 IAI47_14710 YajQ family cyclic di-GMP-binding protein 0.32 IAI47_04810 DNA repair protein RecN low > 76
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_07570 nucleotide-binding protein 0.33 CSW01_04395 DNA repair protein RecN low > 62
Dickeya dadantii 3937 0.48 DDA3937_RS05560 YajQ family cyclic di-GMP-binding protein 0.32 DDA3937_RS04325 DNA repair protein RecN low > 74
Enterobacter sp. TBS_079 0.48 MPMX20_01017 hypothetical protein 0.31 MPMX20_03486 DNA repair protein RecN low > 85
Enterobacter asburiae PDN3 0.48 EX28DRAFT_2545 Uncharacterized protein conserved in bacteria 0.31 EX28DRAFT_2719 DNA repair protein RecN low > 76
Dickeya dianthicola 67-19 0.48 HGI48_RS05620 YajQ family cyclic di-GMP-binding protein 0.32 HGI48_RS04320 DNA repair protein RecN — —
Shewanella amazonensis SB2B 0.48 Sama_2557 putative nucleotide-binding protein (RefSeq) 0.35 Sama_1026 recombination and repair protein (RefSeq) low > 62
Pectobacterium carotovorum WPP14 0.48 HER17_RS15905 YajQ family cyclic di-GMP-binding protein 0.30 HER17_RS17420 DNA repair protein RecN low > 75
Alteromonas macleodii MIT1002 0.48 MIT1002_04129 putative nucleotide-binding protein 0.30 MIT1002_01443 Recombination protein N low > 70
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF4337 FIG001943: hypothetical protein YajQ 0.30 GFF4162 DNA repair protein RecN low > 78
Klebsiella michiganensis M5al 0.47 BWI76_RS06410 YajQ family cyclic di-GMP-binding protein 0.30 BWI76_RS21560 DNA repair protein RecN low > 92
Serratia liquefaciens MT49 0.47 IAI46_04955 YajQ family cyclic di-GMP-binding protein 0.32 IAI46_19635 DNA repair protein RecN low > 86
Dickeya dianthicola ME23 0.47 DZA65_RS05945 YajQ family cyclic di-GMP-binding protein 0.32 DZA65_RS04235 DNA repair protein RecN low > 75
Erwinia tracheiphila SCR3 0.46 LU632_RS18450 YajQ family cyclic di-GMP-binding protein 0.30 LU632_RS16985 recN DNA repair protein RecN low > 74
Shewanella loihica PV-4 0.46 Shew_2893 nucleotide-binding protein (RefSeq) 0.34 Shew_1196 recombination and repair protein (RefSeq) low > 60
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS07165 nucleotide-binding protein 0.32 HSERO_RS03060 DNA repair protein low > 78
Shewanella sp. ANA-3 0.46 Shewana3_0782 putative nucleotide-binding protein (RefSeq) 0.34 Shewana3_1104 recombination and repair protein (RefSeq) low > 73
Variovorax sp. SCN45 0.45 GFF3099 UPF0234 protein Yitk 0.27 GFF2357 DNA repair protein RecN — —
Rahnella sp. WP5 0.45 EX31_RS22185 YajQ family cyclic di-GMP-binding protein 0.32 EX31_RS21760 DNA repair protein RecN low > 89
Azospirillum sp. SherDot2 0.45 MPMX19_04413 hypothetical protein 0.26 MPMX19_01601 DNA repair protein RecN low > 112
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2620 FIG001943: hypothetical protein YajQ 0.29 Ac3H11_3460 DNA repair protein RecN — —
Shewanella oneidensis MR-1 0.44 SO3815 conserved hypothetical protein (NCBI ptt file) 0.34 SO3462 recN DNA repair protein RecN (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF292 FIG001943: hypothetical protein YajQ 0.29 GFF829 DNA repair protein RecN — —
Azospirillum brasilense Sp245 0.43 AZOBR_RS21810 nucleotide-binding protein 0.26 AZOBR_RS12395 DNA repair protein RecN — —
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS17155 nucleotide-binding protein 0.31 RR42_RS05910 DNA repair protein — —
Ralstonia solanacearum GMI1000 0.42 RS_RS12780 nucleotide-binding protein 0.30 RS_RS13275 DNA repair protein RecN low > 80
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS00820 YajQ family cyclic di-GMP-binding protein 0.30 ABZR87_RS01065 DNA repair protein RecN low > 80
Magnetospirillum magneticum AMB-1 0.42 AMB_RS18375 nucleotide-binding protein 0.26 AMB_RS19520 DNA repair protein RecN — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS05160 YajQ family cyclic di-GMP-binding protein 0.30 RALBFv3_RS05415 DNA repair protein RecN low > 76
Ralstonia solanacearum UW163 0.42 UW163_RS08465 YajQ family cyclic di-GMP-binding protein 0.30 UW163_RS08210 DNA repair protein RecN — —
Paraburkholderia graminis OAS925 0.41 ABIE53_003357 uncharacterized protein YajQ (UPF0234 family) 0.26 ABIE53_000856 DNA repair protein RecN (Recombination protein N) — —
Ralstonia solanacearum PSI07 0.41 RPSI07_RS12140 YajQ family cyclic di-GMP-binding protein 0.30 RPSI07_RS11890 DNA repair protein RecN — —
Desulfovibrio vulgaris Hildenborough JW710 0.41 DVU1981 conserved hypothetical protein (TIGR) 0.19 DVU2463 recN DNA repair protein RecN (TIGR) low > 55
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_04122 hypothetical protein 0.27 H281DRAFT_04692 DNA replication and repair protein RecN — —
Desulfovibrio vulgaris Miyazaki F 0.41 DvMF_3058 putative nucleotide-binding protein (RefSeq) 0.17 DvMF_0923 SMC domain protein (RefSeq) low > 51
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS15930 nucleotide-binding protein 0.27 BPHYT_RS03560 DNA repair protein — —
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS02775 YajQ family cyclic di-GMP-binding protein 0.29 QEN71_RS26535 DNA repair protein RecN — —
Mycobacterium tuberculosis H37Rv 0.39 Rv0566c Conserved protein 0.17 Rv1696 Probable DNA repair protein RecN (recombination protein N) low > 58
Acinetobacter radioresistens SK82 0.38 MPMX26_02644 hypothetical protein 0.23 MPMX26_00239 DNA repair protein RecN low > 36
Dechlorosoma suillum PS 0.36 Dsui_3245 hypothetical protein 0.28 Dsui_3072 DNA repair protein RecN low > 51
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS04840 YajQ family cyclic di-GMP-binding protein 0.22 ABZR88_RS06580 DNA repair protein RecN low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.36 CA265_RS09840 YajQ family cyclic di-GMP-binding protein 0.21 CA265_RS14855 DNA repair protein RecN low > 88
Synechococcus elongatus PCC 7942 0.35 Synpcc7942_0865 nucleotide-binding protein 0.20 Synpcc7942_1779 recN DNA repair protein RecN low > 38
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_15545 YajQ family cyclic di-GMP-binding protein 0.21 CA264_13235 DNA repair protein RecN low > 74

Not shown: 1 genomes with orthologs for Xcc-8004.4605.1 only; 20 genomes with orthologs for Xcc-8004.3431.1 only