Conservation of cofitness between SMc04403 and SMc03032 in Sinorhizobium meliloti 1021

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc04403 peptidyl-dipeptidase A protein 1.0 SMc03032 flagellar basal body P-ring protein 0.25 15
Agrobacterium fabrum C58 0.80 Atu2664 peptidyl-dipeptidase 0.73 Atu0550 flagellar P-ring protein precursor 0.24 56
Rhizobium sp. OAE497 0.79 ABIE40_RS18135 M3 family metallopeptidase 0.75 ABIE40_RS02995 flagellar basal body P-ring protein FlgI low > 107
Bosea sp. OAE506 0.56 ABIE41_RS12985 M3 family metallopeptidase 0.55 ABIE41_RS05540 flagellar basal body P-ring protein FlgI low > 77
Phaeobacter inhibens DSM 17395 0.51 PGA1_c26590 peptidyl-dipeptidase Dcp 0.42 PGA1_c35600 flagellar P-ring protein FlgI low > 62
Rhodopseudomonas palustris CGA009 0.50 TX73_004495 M3 family metallopeptidase 0.46 TX73_020265 flagellar basal body P-ring protein FlgI low > 86
Azospirillum brasilense Sp245 0.50 AZOBR_RS23485 peptidase M3 0.46 AZOBR_RS11255 flagellar basal body P-ring biosynthesis protein FlgA low > 97
Dinoroseobacter shibae DFL-12 0.46 Dshi_2973 Peptidyl-dipeptidase Dcp (RefSeq) 0.41 Dshi_3376 flagellar P-ring protein (RefSeq) low > 64
Shewanella loihica PV-4 0.43 Shew_2161 peptidyl-dipeptidase Dcp (RefSeq) 0.39 Shew_1352 flgI flagellar basal body P-ring protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.42 Shewana3_2492 peptidyl-dipeptidase Dcp (RefSeq) 0.38 Shewana3_1328 flgI flagellar basal body P-ring protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.42 Sama_1564 peptidyl-dipeptidase Dcp (RefSeq) 0.39 Sama_2311 flgI flagellar basal body P-ring protein (RefSeq) low > 62
Caulobacter crescentus NA1000 0.41 CCNA_03816 peptidyl-dipeptidase DCP 0.44 CCNA_02665 flagellar P-ring protein FlgI low > 66
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_03816 peptidyl-dipeptidase DCP 0.44 CCNA_02665 flagellar P-ring protein FlgI low > 67
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_2479 Zn-dependent oligopeptidases 0.47 Ga0059261_1102 Flagellar basal-body P-ring protein low > 68
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_00370 M3 family peptidase 0.40 OKGIIK_02685 flgI Flagellar basal body P-ring protein FlgI — —
Alteromonas macleodii MIT1002 0.39 MIT1002_00401 Peptidyl-dipeptidase dcp 0.41 MIT1002_01048 Basal body P-ring protein low > 70
Shewanella oneidensis MR-1 0.39 SO3142 dcp-1 peptidyl-dipeptidase Dcp (NCBI ptt file) 0.38 SO3242 flgI flagellar P-ring protein FlgI (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.38 ABIE51_RS09155 M3 family metallopeptidase 0.40 ABIE51_RS16705 flagellar basal body P-ring protein FlgI low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS12525 M3 family metallopeptidase 0.43 A4249_RS08540 flagellar basal body P-ring protein FlgI low > 48
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS06270 M3 family metallopeptidase 0.40 LRK54_RS13440 flagellar basal body P-ring protein FlgI low > 59
Rhodanobacter denitrificans MT42 0.38 LRK55_RS06015 M3 family metallopeptidase 0.40 LRK55_RS13180 flagellar basal body P-ring protein FlgI low > 63
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.301.1 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) 0.38 Xcc-8004.2786.1 Flagellar P-ring protein FlgI low > 74
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS12690 peptidyl-dipeptidase Dcp 0.40 ABZR86_RS20110 flagellar basal body P-ring protein FlgI low > 74
Serratia liquefaciens MT49 0.36 IAI46_11800 peptidyl-dipeptidase Dcp 0.36 IAI46_15925 flagellar basal body P-ring protein FlgI low > 86
Rahnella sp. WP5 0.35 EX31_RS05310 peptidyl-dipeptidase Dcp 0.32 EX31_RS11280 flagellar basal body P-ring protein FlgI low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_02174 Dipeptidyl carboxypeptidase 0.35 OHPLBJKB_02585 Flagellar P-ring protein low > 73
Escherichia coli ECRC99 0.35 KEDOAH_27410 dcp peptidyl-dipeptidase Dcp 0.35 KEDOAH_24115 flgI flagellar basal body P-ring protein FlgI — —
Escherichia coli ECRC101 0.35 OKFHMN_01020 dcp peptidyl-dipeptidase Dcp 0.35 OKFHMN_03640 flgI flagellar basal body P-ring protein FlgI — —
Escherichia coli ECRC98 0.35 JDDGAC_03530 dcp peptidyl-dipeptidase Dcp 0.35 JDDGAC_07300 flgI flagellar basal body P-ring protein FlgI — —
Escherichia coli ECRC101 0.35 MCAODC_16905 dcp peptidyl-dipeptidase Dcp 0.35 MCAODC_23000 flgI flagellar basal body P-ring protein FlgI — —
Escherichia coli ECRC102 0.35 NIAGMN_25165 dcp peptidyl-dipeptidase Dcp 0.35 NIAGMN_24190 flgI flagellar basal body P-ring protein FlgI — —
Escherichia coli ECRC62 0.35 BNILDI_17135 dcp peptidyl-dipeptidase Dcp 0.35 BNILDI_19330 flgI flagellar basal body P-ring protein FlgI — —
Escherichia coli ECOR27 0.35 NOLOHH_18645 dcp peptidyl-dipeptidase Dcp 0.35 NOLOHH_21170 flgI flagellar basal body P-ring protein FlgI — —
Escherichia coli BW25113 0.35 b1538 dcp dipeptidyl carboxypeptidase II (NCBI) 0.35 b1080 flgI homolog of Salmonella P-ring of flagella basal body (VIMSS) low > 76
Escherichia coli BL21 0.35 ECD_01497 dipeptidyl carboxypeptidase II 0.35 ECD_01076 putative flagellar basal body protein — —
Escherichia fergusonii Becca 0.35 EFB2_02418 Dipeptidyl carboxypeptidase 0.35 EFB2_02894 Flagellar P-ring protein low > 86
Escherichia coli Nissle 1917 0.34 ECOLIN_RS08805 peptidyl-dipeptidase Dcp 0.35 ECOLIN_RS06250 flagellar basal body P-ring protein FlgI — —
Enterobacter sp. TBS_079 0.34 MPMX20_02100 Dipeptidyl carboxypeptidase 0.34 MPMX20_01759 Flagellar P-ring protein low > 85
Enterobacter asburiae PDN3 0.34 EX28DRAFT_1449 Zn-dependent oligopeptidases 0.34 EX28DRAFT_1852 Flagellar basal-body P-ring protein low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF2498 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) 0.34 GFF3361 Flagellar P-ring protein FlgI low > 78
Pantoea sp. MT58 0.31 IAI47_09830 peptidyl-dipeptidase Dcp 0.31 IAI47_12130 flagellar basal body P-ring protein FlgI low > 76
Erwinia tracheiphila SCR3 0.28 LU632_RS19470 prlC oligopeptidase A 0.34 LU632_RS10430 flagellar basal body P-ring protein FlgI low > 74
Dickeya dianthicola ME23 0.28 DZA65_RS00035 oligopeptidase A 0.34 DZA65_RS13975 flagellar basal body P-ring protein FlgI low > 75
Pseudomonas stutzeri RCH2 0.28 Psest_4320 Zn-dependent oligopeptidases 0.38 Psest_2961 Flagellar basal-body P-ring protein low > 67
Pectobacterium carotovorum WPP14 0.27 HER17_RS21300 oligopeptidase A 0.36 HER17_RS08200 flagellar basal body P-ring protein FlgI low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A 0.37 Psyr_3473 Flagellar P-ring protein low > 86
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS00240 oligopeptidase A 0.38 PFLU_RS21845 flagellar basal body P-ring protein FlgI low > 109
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A 0.37 Psyr_3473 Flagellar P-ring protein low > 86
Pseudomonas fluorescens SBW25 0.27 PFLU_RS00240 oligopeptidase A 0.38 PFLU_RS21845 flagellar basal body P-ring protein FlgI low > 109
Vibrio cholerae E7946 ATCC 55056 0.27 CSW01_01010 oligopeptidase A 0.38 CSW01_11190 flagellar P-ring protein low > 62
Pseudomonas simiae WCS417 0.27 PS417_00245 oligopeptidase A 0.38 PS417_19875 flagellar P-ring protein FlgI — —
Dickeya dianthicola 67-19 0.27 HGI48_RS00045 oligopeptidase A 0.34 HGI48_RS13490 flagellar basal body P-ring protein FlgI low > 71
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_624 Oligopeptidase A (EC 3.4.24.70) 0.38 PfGW456L13_4384 Flagellar P-ring protein FlgI low > 87
Dickeya dadantii 3937 0.27 DDA3937_RS21265 oligopeptidase A 0.34 DDA3937_RS13445 flagellar basal body P-ring protein FlgI low > 74
Pseudomonas putida KT2440 0.27 PP_0096 oligopeptidase A 0.39 PP_4383 Flagellar P-ring protein low > 96
Pseudomonas sp. RS175 0.27 PFR28_04699 Oligopeptidase A 0.38 PFR28_00807 Flagellar P-ring protein low > 88
Herbaspirillum seropedicae SmR1 0.27 HSERO_RS07290 oligopeptidase A 0.34 HSERO_RS10215 flagellar P-ring protein FlgI low > 78
Marinobacter adhaerens HP15 0.27 HP15_3759 oligopeptidase A-like protein 0.40 HP15_1474 flagellar P-ring protein precursor I low > 73
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_4091 Oligopeptidase A (EC 3.4.24.70) 0.38 Pf6N2E2_2625 Flagellar P-ring protein FlgI low > 103
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_1844 Oligopeptidase A (EC 3.4.24.70) 0.38 Pf1N1B4_3571 Flagellar P-ring protein FlgI low > 87
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_11120 oligopeptidase A 0.38 AO356_03915 flagellar biosynthesis protein FlgI 0.23 86
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_10775 oligopeptidase A 0.39 AO353_18610 flagellar biosynthesis protein FlgI low > 101
Pseudomonas sp. S08-1 0.26 OH686_12360 Oligopeptidase A 0.39 OH686_02940 Flagellar P-ring protein FlgI low > 80
Paraburkholderia graminis OAS925 0.26 ABIE53_002798 oligopeptidase A 0.34 ABIE53_000094 flagellar P-ring protein precursor FlgI 0.33 99
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS05695 M3 family metallopeptidase 0.33 QEN71_RS28885 flagellar basal body P-ring protein FlgI 0.88 92
Dechlorosoma suillum PS 0.26 Dsui_0046 Zn-dependent oligopeptidase 0.36 Dsui_1739 flagellar basal-body P-ring protein low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF4214 Oligopeptidase A (EC 3.4.24.70) 0.35 GFF1408 Flagellar P-ring protein FlgI low > 90
Variovorax sp. SCN45 0.26 GFF963 Oligopeptidase A (EC 3.4.24.70) 0.38 GFF5722 Flagellar P-ring protein FlgI low > 127
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS12875 oligopeptidase A 0.34 BPHYT_RS18860 flagellar P-ring protein FlgI low > 109
Cupriavidus basilensis FW507-4G11 0.25 RR42_RS07340 oligopeptidase A 0.39 RR42_RS35690 flagellar P-ring protein FlgI low > 128
Acidovorax sp. GW101-3H11 0.25 Ac3H11_4097 Oligopeptidase A (EC 3.4.24.70) 0.35 Ac3H11_1369 Flagellar P-ring protein FlgI low > 79
Ralstonia solanacearum GMI1000 0.25 RS_RS08035 oligopeptidase A 0.36 RS_RS18830 flagellar P-ring protein FlgI low > 80
Ralstonia sp. UNC404CL21Col 0.25 ABZR87_RS13490 M3 family metallopeptidase 0.36 ABZR87_RS22255 flagellar basal body P-ring protein FlgI low > 80
Ralstonia solanacearum PSI07 0.25 RPSI07_RS15795 oligopeptidase A 0.36 RPSI07_RS01425 flagellar basal body P-ring protein FlgI low > 81
Ralstonia solanacearum UW163 0.25 UW163_RS15000 oligopeptidase A 0.36 UW163_RS17480 flagellar basal body P-ring protein FlgI — —
Ralstonia solanacearum IBSBF1503 0.25 RALBFv3_RS01690 oligopeptidase A 0.36 RALBFv3_RS21705 flagellar basal body P-ring protein FlgI low > 76
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_00461 oligopeptidase A Metallo peptidase. MEROPS family M03A 0.33 H281DRAFT_05769 flagellar P-ring protein precursor FlgI low > 103
Castellaniella sp019104865 MT123 0.23 ABCV34_RS04180 M3 family metallopeptidase 0.36 ABCV34_RS05735 flagellar basal body P-ring protein FlgI — —

Not shown: 14 genomes with orthologs for SMc04403 only; 5 genomes with orthologs for SMc03032 only