Conservation of cofitness between RR42_RS00615 and RR42_RS19005 in Cupriavidus basilensis FW507-4G11

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS00615 recombinase XerC 1.0 RR42_RS19005 3-dehydroquinate synthase 0.40 10
Ralstonia solanacearum PSI07 0.55 RPSI07_RS23690 tyrosine recombinase XerC 0.82 RPSI07_RS10300 3-dehydroquinate synthase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS00260 Tyrosine recombinase XerC 1 0.83 RS_RS14880 3-dehydroquinate synthase — —
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS05065 tyrosine recombinase XerC 0.83 ABZR87_RS02590 3-dehydroquinate synthase low > 80
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS09675 tyrosine recombinase XerC 0.83 RALBFv3_RS06935 3-dehydroquinate synthase — —
Ralstonia solanacearum UW163 0.52 UW163_RS03905 tyrosine recombinase XerC 0.83 UW163_RS06680 3-dehydroquinate synthase — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS00355 tyrosine recombinase XerC 0.73 QEN71_RS28035 3-dehydroquinate synthase — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS01655 tyrosine recombinase XerC 0.73 BPHYT_RS17885 3-dehydroquinate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_02202 integrase/recombinase XerC 0.73 H281DRAFT_05615 3-dehydroquinate synthase — —
Paraburkholderia graminis OAS925 0.43 ABIE53_000426 integrase/recombinase XerC 0.73 ABIE53_003740 3-dehydroquinate synthase — —
Dechlorosoma suillum PS 0.40 Dsui_0651 tyrosine recombinase XerC 0.59 Dsui_1095 3-dehydroquinate synthase — —
Acidovorax sp. GW101-3H11 0.38 Ac3H11_1995 Tyrosine recombinase XerC 0.54 Ac3H11_4705 3-dehydroquinate synthase (EC 4.2.3.4) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF547 Tyrosine recombinase XerC 0.59 GFF1331 3-dehydroquinate synthase (EC 4.2.3.4) low > 90
Castellaniella sp019104865 MT123 0.37 ABCV34_RS13455 tyrosine recombinase XerC 0.55 ABCV34_RS12705 3-dehydroquinate synthase — —
Variovorax sp. SCN45 0.36 GFF4490 Site-specific tyrosine recombinase XerC 0.58 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) low > 127
Variovorax sp. OAS795 0.36 ABID97_RS06150 tyrosine recombinase XerC 0.60 ABID97_RS23255 3-dehydroquinate synthase — —
Pseudomonas sp. S08-1 0.34 OH686_13785 tyrosine recombinase XerC 0.57 OH686_10015 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_09050 recombinase XerC 0.56 AO353_12505 3-dehydroquinate synthase — —
Pseudomonas stutzeri RCH2 0.33 Psest_3767 tyrosine recombinase XerC 0.53 Psest_3713 3-dehydroquinate synthase — —
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_842 Tyrosine recombinase XerC 0.58 PfGW456L13_275 3-dehydroquinate synthase (EC 4.2.3.4) low > 87
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_12725 recombinase XerC 0.58 AO356_09385 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4416 Tyrosine recombinase XerC 0.58 Pf6N2E2_3754 3-dehydroquinate synthase (EC 4.2.3.4) — —
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0185 tyrosine recombinase XerC subunit 0.56 Psyr_0409 3-dehydroquinate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0185 tyrosine recombinase XerC subunit 0.56 Psyr_0409 3-dehydroquinate synthase — —
Pseudomonas sp. RS175 0.32 PFR28_04378 Tyrosine recombinase XerC 0.57 PFR28_05013 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_2171 Tyrosine recombinase XerC 0.57 Pf1N1B4_1537 3-dehydroquinate synthase (EC 4.2.3.4) — —
Pseudomonas putida KT2440 0.32 PP_5230 Tyrosine recombinase XerC 0.57 PP_5078 3-dehydroquinate synthase — —
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS15025 tyrosine recombinase XerC 0.42 ABZR86_RS10480 3-dehydroquinate synthase low > 74
Pantoea sp. MT58 0.32 IAI47_18400 tyrosine recombinase XerC 0.49 IAI47_01895 3-dehydroquinate synthase — —
Serratia liquefaciens MT49 0.32 IAI46_00725 tyrosine recombinase XerC 0.48 IAI46_23700 3-dehydroquinate synthase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF239 Tyrosine recombinase XerC 0.47 GFF630 3-dehydroquinate synthase (EC 4.2.3.4) — —
Klebsiella michiganensis M5al 0.31 BWI76_RS01210 tyrosine recombinase XerC 0.49 BWI76_RS26085 3-dehydroquinate synthase 0.34 13
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_15325 xerC tyrosine recombinase XerC 0.44 OKGIIK_11185 aroB 3-dehydroquinate synthase — —
Rahnella sp. WP5 0.31 EX31_RS15165 tyrosine recombinase XerC 0.50 EX31_RS04720 3-dehydroquinate synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.39 Xcc-8004.1615.1 3-dehydroquinate synthase (EC 4.2.3.4) — —
Lysobacter sp. OAE881 0.31 ABIE51_RS03035 tyrosine recombinase XerC 0.41 ABIE51_RS16100 3-dehydroquinate synthase — —
Rhodanobacter denitrificans MT42 0.31 LRK55_RS08300 tyrosine recombinase XerC 0.44 LRK55_RS04085 3-dehydroquinate synthase — —
Escherichia coli ECRC99 0.31 KEDOAH_13730 xerC tyrosine recombinase XerC 0.48 KEDOAH_11025 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC101 0.31 MCAODC_04925 xerC tyrosine recombinase XerC 0.48 MCAODC_07645 aroB 3-dehydroquinate synthase — —
Dickeya dadantii 3937 0.31 DDA3937_RS19890 tyrosine recombinase XerC 0.47 DDA3937_RS19545 3-dehydroquinate synthase — —
Escherichia coli ECRC102 0.31 NIAGMN_12175 xerC tyrosine recombinase XerC 0.48 NIAGMN_14885 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC98 0.31 JDDGAC_18045 xerC tyrosine recombinase XerC 0.48 JDDGAC_20745 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC100 0.31 OKFHMN_14420 xerC tyrosine recombinase XerC 0.48 OKFHMN_17115 aroB 3-dehydroquinate synthase low > 80
Escherichia coli Nissle 1917 0.31 ECOLIN_RS21875 tyrosine recombinase XerC 0.48 ECOLIN_RS19360 3-dehydroquinate synthase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_04239 Tyrosine recombinase XerC 0.48 OHPLBJKB_00314 3-dehydroquinate synthase low > 73
Escherichia coli BW25113 0.31 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.48 b3389 aroB 3-dehydroquinate synthase (NCBI) low > 76
Escherichia coli BL21 0.31 ECD_03687 site-specific tyrosine recombinase 0.49 ECD_03241 3-dehydroquinate synthase low > 61
Enterobacter asburiae PDN3 0.31 EX28DRAFT_4480 tyrosine recombinase XerC 0.48 EX28DRAFT_4153 3-dehydroquinate synthase (EC 4.2.3.4) — —
Escherichia coli ECOR27 0.31 NOLOHH_06550 xerC tyrosine recombinase XerC 0.49 NOLOHH_08905 aroB 3-dehydroquinate synthase low > 75
Escherichia fergusonii Becca 0.31 EFB2_04826 Tyrosine recombinase XerC 0.48 EFB2_00439 3-dehydroquinate synthase low > 86
Escherichia coli ECOR38 0.31 HEPCGN_13125 xerC tyrosine recombinase XerC 0.48 HEPCGN_15935 aroB 3-dehydroquinate synthase low > 87
Escherichia coli ECRC62 0.31 BNILDI_04985 xerC tyrosine recombinase XerC 0.49 BNILDI_02615 aroB 3-dehydroquinate synthase low > 75
Marinobacter adhaerens HP15 0.31 HP15_250 site-specific tyrosine recombinase XerC 0.54 HP15_480 3-dehydroquinate synthase — —
Shewanella loihica PV-4 0.31 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.50 Shew_0214 3-dehydroquinate synthase (RefSeq) low > 60
Dickeya dianthicola 67-19 0.31 HGI48_RS20045 tyrosine recombinase XerC 0.47 HGI48_RS19675 3-dehydroquinate synthase — —
Dickeya dianthicola ME23 0.30 DZA65_RS21090 tyrosine recombinase XerC 0.47 DZA65_RS20760 3-dehydroquinate synthase — —
Shewanella oneidensis MR-1 0.30 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.52 SO0287 aroB 3-dehydroquinate synthase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.30 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.52 Shewana3_3893 aroB 3-dehydroquinate synthase (RefSeq) low > 73
Pectobacterium carotovorum WPP14 0.30 HER17_RS01350 tyrosine recombinase XerC 0.47 HER17_RS01780 3-dehydroquinate synthase low > 75
Shewanella amazonensis SB2B 0.30 Sama_3247 integrase/recombinase XerC (RefSeq) 0.53 Sama_3367 3-dehydroquinate synthase (RefSeq) low > 62
Enterobacter sp. TBS_079 0.30 MPMX20_04465 Tyrosine recombinase XerC 0.48 MPMX20_04278 3-dehydroquinate synthase low > 85
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS08535 tyrosine recombinase XerC 0.44 LRK54_RS04310 3-dehydroquinate synthase — —
Erwinia tracheiphila SCR3 0.29 LU632_RS24135 xerC tyrosine recombinase XerC 0.47 LU632_RS22865 aroB 3-dehydroquinate synthase — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS29280 tyrosine recombinase XerC 0.57 PFLU_RS02030 3-dehydroquinate synthase — —
Pseudomonas simiae WCS417 0.29 PS417_27595 recombinase XerC 0.57 PS417_01985 3-dehydroquinate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS29280 tyrosine recombinase XerC 0.57 PFLU_RS02030 3-dehydroquinate synthase — —
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.41 B158DRAFT_0764 3-dehydroquinate synthase (EC 4.2.3.4) low > 40
Alteromonas macleodii MIT1002 0.28 MIT1002_00157 Tyrosine recombinase XerC 0.52 MIT1002_00447 3-dehydroquinate synthase — —
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_00650 tyrosine recombinase XerC 0.49 CSW01_13300 3-dehydroquinate synthase low > 62
Rhodospirillum rubrum S1H 0.22 Rru_A1220 Phage integrase (NCBI) 0.40 Rru_A3741 3-dehydroquinate synthase (NCBI) — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_5002 xerC hypothetical protein (NCBI) 0.37 Dshi_1608 3-dehydroquinate synthase (RefSeq) — —
Azospirillum brasilense Sp245 0.22 AZOBR_RS03965 tyrosine recombinase XerC 0.40 AZOBR_RS03220 3-dehydroquinate synthase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_000945 tyrosine recombinase XerC 0.36 TX73_002610 3-dehydroquinate synthase — —
Rhizobium sp. OAE497 0.21 ABIE40_RS17950 tyrosine recombinase XerC 0.38 ABIE40_RS17670 3-dehydroquinate synthase — —
Magnetospirillum magneticum AMB-1 0.21 AMB_RS21485 tyrosine recombinase XerC 0.41 AMB_RS19865 3-dehydroquinate synthase — —
Azospirillum sp. SherDot2 0.21 MPMX19_02110 Tyrosine recombinase XerC 0.39 MPMX19_02639 3-dehydroquinate synthase — —
Phaeobacter inhibens DSM 17395 0.21 PGA1_c05760 putative tyrosine recombinase XerC 0.36 PGA1_c14100 3-dehydroquinate synthase AroB — —
Sinorhizobium meliloti 1021 0.20 SMc02489 site-specific tyrosine recombinase XerC 0.36 SMc00696 3-dehydroquinate synthase — —
Agrobacterium fabrum C58 0.20 Atu2628 site-specific recombinase 0.36 Atu3625 3-dehydroquinate synthase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.19 A4249_RS12210 tyrosine recombinase XerC 0.40 A4249_RS04175 3-dehydroquinate synthase — —
Sphingomonas koreensis DSMZ 15582 0.19 Ga0059261_2764 Site-specific recombinase XerD 0.37 Ga0059261_3591 3-dehydroquinate synthase (EC 4.2.3.4) — —

Not shown: 4 genomes with orthologs for RR42_RS00615 only; 8 genomes with orthologs for RR42_RS19005 only