Conservation of cofitness between QEN71_RS06015 and QEN71_RS06045 in Paraburkholderia sabiae LMG 24235

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS06015 protease modulator HflC 1.0 QEN71_RS06045 Tex family protein 0.77 4
Paraburkholderia graminis OAS925 0.76 ABIE53_002734 membrane protease subunit HflC 0.91 ABIE53_002728 uncharacterized protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_00524 protease FtsH subunit HflC 0.89 H281DRAFT_00530 uncharacterized protein — —
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS12540 membrane protein 0.90 BPHYT_RS12510 RNA-binding protein — —
Ralstonia solanacearum GMI1000 0.47 RS_RS06125 protease modulator HflC 0.78 RS_RS08180 RNA-binding transcriptional accessory protein — —
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS10955 protease modulator HflC 0.79 ABZR87_RS13340 Tex family protein low > 80
Ralstonia solanacearum PSI07 0.44 RPSI07_RS18060 protease modulator HflC 0.77 RPSI07_RS15945 RNA-binding transcriptional accessory protein low > 81
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS15315 protease modulator HflC 0.78 RALBFv3_RS01545 RNA-binding transcriptional accessory protein — —
Ralstonia solanacearum UW163 0.44 UW163_RS12780 protease modulator HflC 0.78 UW163_RS14855 RNA-binding transcriptional accessory protein — —
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS14760 membrane protein 0.65 HSERO_RS20945 RNA-binding protein 0.24 28
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS13100 membrane protein 0.75 RR42_RS07565 transcription accessory protein — —
Acidovorax sp. GW101-3H11 0.39 Ac3H11_1802 HflC protein 0.57 Ac3H11_2501 Transcription accessory protein (S1 RNA-binding domain) — —
Dechlorosoma suillum PS 0.37 Dsui_3134 membrane protease subunit, stomatin/prohibitin 0.69 Dsui_2546 transcriptional accessory protein — —
Variovorax sp. OAS795 0.36 ABID97_RS14265 protease modulator HflC 0.58 ABID97_RS15930 Tex family protein low > 91
Variovorax sp. SCN45 0.35 GFF1003 HflC protein 0.56 GFF2 Transcription accessory protein (S1 RNA-binding domain) low > 127
Castellaniella sp019104865 MT123 0.33 ABCV34_RS02665 protease modulator HflC 0.62 ABCV34_RS01870 Tex family protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF4855 HflC protein 0.57 GFF4649 Transcription accessory protein (S1 RNA-binding domain) low > 90
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_06645 hflC protease modulator HflC 0.62 OKGIIK_13735 tex RNA-binding transcriptional accessory protein low > 52
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_13160 membrane protease HflC 0.63 AO353_11740 DNA damage response protein (yhgF like) (from data) 0.21 93
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_151 HflC protein 0.63 PfGW456L13_428 Transcription accessory protein (S1 RNA-binding domain) low > 87
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_1409 HflC protein 0.63 Pf1N1B4_1771 Transcription accessory protein (S1 RNA-binding domain) — —
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_3611 HflC protein 0.64 Pf6N2E2_3906 Transcription accessory protein (S1 RNA-binding domain) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_0575 protease FtsH subunit HflC 0.63 Psyr_0257 RNA binding S1 low > 86
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_0575 protease FtsH subunit HflC 0.63 Psyr_0257 RNA binding S1 low > 86
Shewanella amazonensis SB2B 0.28 Sama_3022 hflC protein (RefSeq) 0.57 Sama_3508 hypothetical protein (RefSeq) low > 62
Marinobacter adhaerens HP15 0.28 HP15_2496 HflC 0.63 HP15_216 DNA damage response protein (yhgF like) (from data) low > 73
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_08640 membrane protease HflC 0.63 AO356_10175 transcription accessory protein low > 104
Pseudomonas sp. S08-1 0.28 OH686_09455 HflC protein 0.65 OH686_11100 Transcription accessory protein (S1 RNA-binding domain) low > 80
Alteromonas macleodii MIT1002 0.28 MIT1002_03785 Modulator of FtsH protease HflC 0.61 MIT1002_04012 hypothetical protein low > 70
Pseudomonas fluorescens SBW25 0.28 PFLU_RS02585 protease modulator HflC 0.63 PFLU_RS01275 RNA-binding transcriptional accessory protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS02585 protease modulator HflC 0.63 PFLU_RS01275 RNA-binding transcriptional accessory protein low > 109
Pantoea sp. MT58 0.27 IAI47_02605 protease modulator HflC 0.60 IAI47_01805 RNA-binding transcriptional accessory protein low > 76
Pseudomonas sp. RS175 0.27 PFR28_05124 Modulator of FtsH protease HflC 0.64 PFR28_04867 Protein YhgF low > 88
Shewanella sp. ANA-3 0.27 Shewana3_0600 HflC protein (RefSeq) 0.57 Shewana3_4013 RNA-binding S1 domain-containing protein (RefSeq) low > 73
Rhodanobacter denitrificans MT42 0.27 LRK55_RS00385 protease modulator HflC 0.62 LRK55_RS09820 Tex family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS00615 protease modulator HflC 0.62 LRK54_RS10180 RNA-binding transcriptional accessory protein low > 59
Pseudomonas stutzeri RCH2 0.27 Psest_0686 Membrane protease subunits, stomatin/prohibitin homologs 0.65 Psest_3996 Transcriptional accessory protein — —
Shewanella oneidensis MR-1 0.27 SO0606 hflC hflC protein (NCBI ptt file) 0.57 SO4629 conserved hypothetical protein (NCBI ptt file) low > 76
Pseudomonas putida KT2440 0.27 PP_4891 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex 0.64 PP_0245 putative transcriptional accessory protein low > 96
Shewanella loihica PV-4 0.26 Shew_0569 HflC protein (RefSeq) 0.58 Shew_3634 RNA-binding S1 domain-containing protein (RefSeq) low > 60
Enterobacter asburiae PDN3 0.26 EX28DRAFT_3372 HflC protein 0.59 EX28DRAFT_4136 Transcriptional accessory protein low > 76
Pseudomonas simiae WCS417 0.26 PS417_02505 membane protease HflC 0.63 PS417_01165 transcription accessory protein — —
Erwinia tracheiphila SCR3 0.26 LU632_RS02070 hflC protease modulator HflC 0.58 LU632_RS22955 RNA-binding transcriptional accessory protein low > 74
Lysobacter sp. OAE881 0.26 ABIE51_RS06555 protease modulator HflC 0.63 ABIE51_RS00300 Tex family protein low > 62
Serratia liquefaciens MT49 0.26 IAI46_01640 protease modulator HflC 0.59 IAI46_23800 RNA-binding transcriptional accessory protein low > 86
Magnetospirillum magneticum AMB-1 0.26 AMB_RS17655 protease modulator HflC 0.63 AMB_RS17285 RNA-binding transcriptional accessory protein — —
Escherichia coli ECRC62 0.25 BNILDI_06985 hflC protease modulator HflC 0.60 BNILDI_02705 yhgF Protein YhgF low > 75
Escherichia fergusonii Becca 0.25 EFB2_04360 Modulator of FtsH protease HflC 0.60 EFB2_00421 Protein YhgF low > 86
Escherichia coli ECRC98 0.25 JDDGAC_15880 hflC protease modulator HflC 0.60 JDDGAC_20655 yhgF Protein YhgF low > 86
Escherichia coli BL21 0.25 ECD_04042 HflB protease modulator specific for phage lambda cII repressor 0.60 ECD_03259 putative transcriptional accessory protein low > 61
Escherichia coli Nissle 1917 0.25 ECOLIN_RS24245 protease modulator HflC 0.60 ECOLIN_RS19465 Tex family protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_03867 Modulator of FtsH protease HflC 0.60 OHPLBJKB_00296 Protein YhgF 0.60 31
Escherichia coli BW25113 0.25 b4175 hflC modulator for HflB protease specific for phage lambda cII repressor (NCBI) 0.60 b3407 yhgF orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECRC99 0.25 KEDOAH_15915 hflC protease modulator HflC 0.60 KEDOAH_11115 yhgF Protein YhgF — —
Escherichia coli ECOR27 0.25 NOLOHH_04505 hflC protease modulator HflC 0.60 NOLOHH_08815 yhgF Protein YhgF low > 75
Escherichia coli ECRC101 0.25 MCAODC_02755 hflC protease modulator HflC 0.60 MCAODC_07555 yhgF Protein YhgF low > 87
Enterobacter sp. TBS_079 0.25 MPMX20_00456 Modulator of FtsH protease HflC 0.60 MPMX20_04294 Protein YhgF low > 85
Escherichia coli ECRC100 0.25 OKFHMN_12240 hflC protease modulator HflC 0.60 OKFHMN_17025 yhgF Protein YhgF low > 80
Escherichia coli ECRC102 0.25 NIAGMN_10090 hflC protease modulator HflC 0.60 NIAGMN_14795 yhgF Protein YhgF — —
Escherichia coli ECOR38 0.25 HEPCGN_10470 hflC protease modulator HflC 0.60 HEPCGN_15835 yhgF Protein YhgF low > 87
Klebsiella michiganensis M5al 0.25 BWI76_RS02550 protease modulator HflC 0.60 BWI76_RS26655 transcription accessory protein low > 92
Pectobacterium carotovorum WPP14 0.25 HER17_RS02600 protease modulator HflC 0.60 HER17_RS01615 RNA-binding transcriptional accessory protein low > 75
Phaeobacter inhibens DSM 17395 0.25 PGA1_c23700 protein HflC 0.54 PGA1_c09850 S1 domain-containing protein 0.26 26
Azospirillum sp. SherDot2 0.25 MPMX19_01250 Modulator of FtsH protease HflC 0.64 MPMX19_04277 Protein YhgF — —
Dyella japonica UNC79MFTsu3.2 0.25 ABZR86_RS08350 protease modulator HflC 0.62 ABZR86_RS15750 Tex family protein low > 74
Kangiella aquimarina DSM 16071 0.25 B158DRAFT_1955 HflC protein 0.61 B158DRAFT_0683 Transcriptional accessory protein low > 40
Rahnella sp. WP5 0.25 EX31_RS08805 protease modulator HflC 0.58 EX31_RS04840 RNA-binding transcriptional accessory protein low > 89
Dickeya dianthicola 67-19 0.24 HGI48_RS18530 protease modulator HflC 0.59 HGI48_RS19770 RNA-binding transcriptional accessory protein low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF828 HflC protein 0.60 GFF611 Transcription accessory protein (S1 RNA-binding domain) low > 78
Dickeya dianthicola ME23 0.24 DZA65_RS19665 protease modulator HflC 0.59 DZA65_RS20860 RNA-binding transcriptional accessory protein low > 75
Rhodopseudomonas palustris CGA009 0.24 TX73_018075 protease modulator HflC 0.59 TX73_003025 Tex family protein low > 86
Dickeya dadantii 3937 0.24 DDA3937_RS18595 protease modulator HflC 0.59 DDA3937_RS19635 RNA-binding transcriptional accessory protein — —
Vibrio cholerae E7946 ATCC 55056 0.23 CSW01_01850 protease modulator HflC 0.60 CSW01_13705 RNA-binding transcriptional accessory protein low > 62
Azospirillum brasilense Sp245 0.23 AZOBR_RS06525 membrane protein 0.65 AZOBR_RS14535 RNA-binding protein low > 97
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0683 hflC protein, putative (TIGR) 0.40 DVU2246 S1 RNA binding domain protein (TIGR) low > 55
Xanthomonas campestris pv. campestris strain 8004 0.22 Xcc-8004.3954.1 HflC protein 0.62 Xcc-8004.2426.1 Transcription accessory protein (S1 RNA-binding domain) low > 74
Agrobacterium fabrum C58 0.21 Atu2044 HFLC protein 0.54 Atu0648 hypothetical protein 0.20 52
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_2675 HflC protein (RefSeq) 0.41 DvMF_0870 RNA binding S1 domain protein (RefSeq) low > 51
Echinicola vietnamensis KMM 6221, DSM 17526 0.19 Echvi_2032 HflC protein 0.45 Echvi_3978 Transcriptional accessory protein low > 79
Sinorhizobium meliloti 1021 0.19 SMc01440 hydrolase serine protease transmembrane protein 0.53 SMc02644 hypothetical protein low > 103
Rhizobium sp. OAE497 0.16 ABIE40_RS11530 protease modulator HflC 0.55 ABIE40_RS05475 Tex family protein low > 107

Not shown: 4 genomes with orthologs for QEN71_RS06015 only; 13 genomes with orthologs for QEN71_RS06045 only