Conservation of cofitness between Psyr_0003 and Psyr_5065 in Pseudomonas syringae pv. syringae B728a

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0003 DNA replication and repair protein RecF 1.0 Psyr_5065 ATP-dependent DNA helicase UvrD 0.32 19
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0003 DNA replication and repair protein RecF 1.00 Psyr_5065 ATP-dependent DNA helicase UvrD 0.28 35
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_10480 recombinase RecF 0.89 AO353_10055 DNA helicase II 0.46 15
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.89 PFLU_RS29900 DNA helicase II 0.29 10
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.87 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.50 8
Pseudomonas fluorescens SBW25 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.89 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_11635 recombinase RecF 0.88 AO356_11990 DNA helicase II 0.63 9
Pseudomonas sp. DMC3 0.93 GFF578 DNA replication and repair protein RecF 0.89 GFF512 DNA helicase II low > 89
Pseudomonas orientalis W4I3 0.93 QF045_RS02960 DNA replication/repair protein RecF 0.89 QF045_RS02600 DNA helicase II low > 93
Pseudomonas lactucae CFBP13502 0.93 GEMAOFIL_00183 DNA replication and repair protein RecF 0.89 GEMAOFIL_00116 DNA helicase II low > 96
Pseudomonas sp. SVBP6 0.93 COO64_RS02120 recF DNA replication/repair protein RecF 0.87 COO64_RS01845 uvrD DNA helicase II 0.51 32
Pseudomonas sp. RS175 0.93 PFR28_04593 DNA replication and repair protein RecF 0.88 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.88 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.47 12
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_664 DNA recombination and repair protein RecF 0.89 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.41 1
Pseudomonas sp. BP01 0.91 JOY50_RS08340 recF DNA replication/repair protein RecF 0.85 JOY50_RS08735 uvrD DNA helicase II low > 84
Pseudomonas putida KT2440 0.89 PP_0012 DNA replication and repair protein 0.86 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.30 1
Pseudomonas segetis P6 0.87 MPMX49_00255 DNA replication and repair protein RecF 0.82 MPMX49_00180 DNA helicase II low > 75
Pseudomonas sp. S08-1 0.85 OH686_12620 DNA recombination and repair protein RecF 0.82 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas aeruginosa PA14 0.82 IKLFDK_25545 DNA replication/repair protein RecF 0.85 IKLFDK_26200 DNA helicase II 0.52 33
Pseudomonas stutzeri RCH2 0.77 Psest_0004 recF protein 0.78 Psest_4098 Superfamily I DNA and RNA helicases 0.25 21
Shewanella oneidensis MR-1 0.42 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.60 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.56 2
Shewanella sp. ANA-3 0.42 Shewana3_0011 recF recombination protein F (RefSeq) 0.60 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Shewanella amazonensis SB2B 0.40 Sama_0015 recF recombination protein F (RefSeq) 0.59 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.56 14
Shewanella loihica PV-4 0.39 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.59 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.63 17
Pectobacterium carotovorum WPP14 0.39 HER17_RS00015 DNA replication/repair protein RecF 0.62 HER17_RS01360 DNA helicase II low > 75
Serratia liquefaciens MT49 0.39 IAI46_00015 DNA replication/repair protein RecF 0.62 IAI46_00735 DNA helicase II 0.54 21
Dickeya dadantii 3937 0.38 DDA3937_RS21285 DNA replication/repair protein RecF 0.62 DDA3937_RS19880 DNA helicase II low > 74
Dickeya dianthicola 67-19 0.38 HGI48_RS00015 DNA replication/repair protein RecF 0.61 HGI48_RS20035 DNA helicase II low > 71
Dickeya dianthicola ME23 0.38 DZA65_RS00015 DNA replication/repair protein RecF 0.62 DZA65_RS21080 DNA helicase II low > 75
Rahnella sp. WP5 0.38 EX31_RS05975 DNA replication/repair protein RecF 0.60 EX31_RS15175 DNA helicase II low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_00003 DNA replication and repair protein RecF 0.62 OHPLBJKB_04237 DNA helicase II low > 74
Escherichia coli Nissle 1917 0.38 ECOLIN_RS21310 DNA replication/repair protein RecF 0.62 ECOLIN_RS21885 DNA helicase II 0.74 1
Escherichia coli BW25113 0.38 b3700 recF recombination protein F (NCBI) 0.62 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.68 6
Escherichia coli ECOR38 0.38 HEPCGN_13720 recF DNA replication/repair protein RecF 0.62 HEPCGN_13115 uvrD DNA helicase II 0.86 2
Escherichia coli ECRC101 0.38 MCAODC_05535 recF DNA replication/repair protein RecF 0.62 MCAODC_04915 uvrD DNA helicase II low > 87
Escherichia fergusonii Becca 0.38 EFB2_00003 DNA replication and repair protein RecF 0.62 EFB2_04824 DNA helicase II 0.46 4
Escherichia coli BL21 0.38 ECD_03583 gap repair protein 0.62 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli ECRC62 0.38 BNILDI_04365 recF DNA replication/repair protein RecF 0.62 BNILDI_04995 uvrD DNA helicase II low > 75
Escherichia coli ECRC100 0.38 OKFHMN_15025 recF DNA replication/repair protein RecF 0.62 OKFHMN_14410 uvrD DNA helicase II low > 79
Escherichia coli ECRC99 0.38 KEDOAH_13125 recF DNA replication/repair protein RecF 0.62 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECOR27 0.38 NOLOHH_07165 recF DNA replication/repair protein RecF 0.62 NOLOHH_06540 uvrD DNA helicase II 0.61 42
Escherichia coli ECRC102 0.38 NIAGMN_12780 recF DNA replication/repair protein RecF 0.62 NIAGMN_12165 uvrD DNA helicase II low > 80
Escherichia coli ECRC98 0.38 JDDGAC_18645 recF DNA replication/repair protein RecF 0.62 JDDGAC_18035 uvrD DNA helicase II low > 87
Enterobacter asburiae PDN3 0.37 EX28DRAFT_3987 DNA replication and repair protein RecF 0.62 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_00065 DNA replication and repair protein RecF 0.60 CSW01_01015 DNA helicase II low > 62
Klebsiella pneumoniae MKP103 0.37 KDGMDA_08670 DNA replication/repair protein RecF 0.61 KDGMDA_09710 DNA helicase II 0.47 6
Enterobacter sp. TBS_079 0.37 MPMX20_00003 DNA replication and repair protein RecF 0.62 MPMX20_04463 DNA helicase II low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF1756 DNA recombination and repair protein RecF 0.62 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.75 1
Pantoea sp. MT58 0.37 IAI47_00015 DNA replication/repair protein RecF 0.61 IAI47_18390 DNA helicase II 0.41 5
Klebsiella michiganensis M5al 0.37 BWI76_RS00010 DNA replication and repair protein RecF 0.62 BWI76_RS01220 DNA-dependent helicase II 0.23 41
Marinobacter adhaerens HP15 0.36 HP15_3705 DNA replication and repair protein recF 0.61 HP15_3403 UvrD/REP helicase 0.47 11
Erwinia amylovora T8 0.36 OLJFJH_05150 DNA replication/repair protein RecF 0.60 OLJFJH_06425 DNA helicase II low > 58
Erwinia tracheiphila SCR3 0.36 LU632_RS00015 recF DNA replication/repair protein RecF 0.61 LU632_RS24125 uvrD DNA helicase II — —
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS19305 DNA replication/repair protein RecF 0.61 PagCFBP13505_RS15370 DNA helicase II low > 74
Erwinia tracheiphila HP pepo 2.2 0.36 IJEDHG_09800 recF DNA replication/repair protein RecF 0.61 IJEDHG_08770 uvrD DNA helicase II — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00003 DNA replication and repair protein RecF 0.60 MIT1002_00153 DNA helicase II low > 70
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0366 DNA replication and repair protein RecF 0.60 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.52 16
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS08475 DNA replication/repair protein RecF 0.52 LRK54_RS06850 DNA helicase II 0.40 3
Rhodanobacter denitrificans MT42 0.28 LRK55_RS08240 DNA replication/repair protein RecF 0.52 LRK55_RS06595 DNA helicase II — —
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_15255 recF DNA replication/repair protein RecF 0.52 OKGIIK_16775 DNA helicase low > 53
Rhodanobacter sp000427505 FW510-R12 0.27 LRK53_RS00015 DNA replication/repair protein RecF 0.52 LRK53_RS01560 UvrD-helicase domain-containing protein — —
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS15145 DNA replication/repair protein RecF 0.53 ABZR86_RS16965 DNA helicase II 0.72 10
Lysobacter sp. OAE881 0.25 ABIE51_RS00765 DNA replication/repair protein RecF 0.55 ABIE51_RS01985 DNA helicase II low > 62
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.52 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA 0.34 13
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.31 HMPREF1078_RS03560 3'-5' exonuclease 0.73 24
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_1156 recF protein 0.34 Echvi_0292 Superfamily I DNA and RNA helicases — —
Fusobacterium nucleatum SB010 0.17 HUW76_00025 DNA replication/repair protein RecF 0.30 HUW76_07175 UvrD-helicase domain-containing protein — —
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.30 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Bacteroides ovatus ATCC 8483 0.17 BACOVA_05088 DNA replication and repair protein RecF 0.32 BACOVA_02365 UvrD/REP helicase low > 96
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS24760 DNA replication and repair protein RecF 0.32 CA265_RS12980 ATP-dependent DNA helicase — —
Bacteroides thetaiotaomicron VPI-5482 0.16 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.30 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.58 21
Rhizobium sp. OAE497 0.16 ABIE40_RS00200 DNA replication/repair protein RecF 0.34 ABIE40_RS11670 UvrD-helicase domain-containing protein low > 107
Phocaeicola dorei CL03T12C01 0.15 ABI39_RS13135 DNA replication and repair protein RecF 0.31 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Cellulophaga baltica 18 0.15 M666_RS11055 DNA replication and repair protein RecF 0.31 M666_RS15390 3'-5' exonuclease — —
Azospirillum sp. SherDot2 0.15 MPMX19_02716 DNA replication and repair protein RecF 0.35 MPMX19_01610 ATP-dependent DNA helicase PcrA — —
Bosea sp. OAE506 0.15 ABIE41_RS04170 DNA replication/repair protein RecF 0.35 ABIE41_RS12730 UvrD-helicase domain-containing protein low > 77
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.32 ABZR88_RS07840 ATP-dependent helicase — —
Bifidobacterium breve UCC2003 0.14 BBR_RS10265 DNA replication and repair protein RecF 0.31 BBR_RS14985 ATP-dependent DNA helicase PcrA low > 34
Sphingomonas koreensis DSMZ 15582 0.13 Ga0059261_2727 DNA replication and repair protein RecF 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases — —
Sphingobium sp. HT1-2 0.13 GFF730 DNA recombination and repair protein RecF 0.36 GFF1640 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 95
Azospirillum brasilense Sp245 0.13 AZOBR_RS17670 recombinase RecF 0.35 AZOBR_RS12445 DNA helicase II 0.38 57
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_17475 DNA replication and repair protein RecF 0.33 CA264_07795 ATP-dependent DNA helicase — —
Magnetospirillum magneticum AMB-1 0.12 AMB_RS03285 DNA replication and repair protein RecF 0.33 AMB_RS03725 DNA helicase II — —
Rhodopseudomonas palustris CGA009 0.12 TX73_000015 DNA replication/repair protein RecF 0.34 TX73_018165 UvrD-helicase domain-containing protein 0.36 7
Phaeobacter inhibens DSM 17395 0.11 PGA1_c00030 DNA replication and repair protein RecF 0.34 PGA1_c09450 DNA helicase II UvrD 0.51 11
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_00158 DNA replication and repair protein recF 0.35 CCNA_01596 DNA helicase II low > 67
Caulobacter crescentus NA1000 0.11 CCNA_00158 DNA replication and repair protein recF 0.35 CCNA_01596 DNA helicase II 0.64 17
Mycobacterium tuberculosis H37Rv 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.34 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 low > 58
Rhodospirillum rubrum S1H 0.10 Rru_A0003 RecF protein (NCBI) 0.34 Rru_A1536 UvrD/REP helicase (NCBI) — —
Synechocystis sp000284455 PCC 6803 0.10 SGL_RS07025 DNA replication/repair protein RecF 0.31 SGL_RS06660 DNA helicase PcrA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.10 A4249_RS15360 DNA replication/repair protein RecF 0.33 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Synechococcus elongatus PCC 7942 0.09 Synpcc7942_2250 recF recombination protein F 0.30 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family low > 38

Not shown: 7 genomes with orthologs for Psyr_0003 only; 21 genomes with orthologs for Psyr_5065 only