Conservation of cofitness between Psyr_0003 and Psyr_0201 in Pseudomonas syringae pv. syringae B728a

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0003 DNA replication and repair protein RecF 1.0 Psyr_0201 ATP-dependent DNA helicase RecG 0.51 7
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0003 DNA replication and repair protein RecF 1.00 Psyr_0201 ATP-dependent DNA helicase RecG 0.57 8
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_10480 recombinase RecF 0.90 AO353_09320 ATP-dependent DNA helicase RecG 0.38 54
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.90 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.32 3
Pseudomonas fluorescens SBW25 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.90 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.90 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.43 20
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_11635 recombinase RecF 0.88 AO356_12380 ATP-dependent DNA helicase RecG 0.58 11
Pseudomonas sp. DMC3 0.93 GFF578 DNA replication and repair protein RecF 0.89 GFF427 ATP-dependent DNA helicase RecG low > 89
Pseudomonas orientalis W4I3 0.93 QF045_RS02960 DNA replication/repair protein RecF 0.90 QF045_RS02225 ATP-dependent DNA helicase RecG low > 93
Pseudomonas lactucae CFBP13502 0.93 GEMAOFIL_00183 DNA replication and repair protein RecF 0.90 GEMAOFIL_00042 ATP-dependent DNA helicase RecG low > 96
Pseudomonas sp. SVBP6 0.93 COO64_RS02120 recF DNA replication/repair protein RecF 0.90 COO64_RS01595 recG ATP-dependent DNA helicase RecG low > 93
Pseudomonas sp. RS175 0.93 PFR28_04593 DNA replication and repair protein RecF 0.88 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.88 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.48 11
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_664 DNA recombination and repair protein RecF 0.90 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.27 32
Pseudomonas sp. BP01 0.91 JOY50_RS08340 recF DNA replication/repair protein RecF 0.90 JOY50_RS08945 recG ATP-dependent DNA helicase RecG low > 84
Pseudomonas simiae WCS417 0.90 PS417_00015 recombinase RecF 0.90 PS417_27870 ATP-dependent DNA helicase RecG 0.38 10
Pseudomonas putida KT2440 0.89 PP_0012 DNA replication and repair protein 0.89 PP_5310 junction-specific ATP-dependent DNA helicase 0.19 51
Pseudomonas segetis P6 0.87 MPMX49_00255 DNA replication and repair protein RecF 0.87 MPMX49_00040 ATP-dependent DNA helicase RecG 0.75 1
Pseudomonas sp. S08-1 0.85 OH686_12620 DNA recombination and repair protein RecF 0.84 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Pseudomonas aeruginosa PA14 0.82 IKLFDK_25545 DNA replication/repair protein RecF 0.85 IKLFDK_26730 ATP-dependent DNA helicase RecG 0.79 1
Pseudomonas stutzeri RCH2 0.77 Psest_0004 recF protein 0.86 Psest_4192 ATP-dependent DNA helicase RecG — —
Shewanella oneidensis MR-1 0.42 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.56 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.51 8
Shewanella sp. ANA-3 0.42 Shewana3_0011 recF recombination protein F (RefSeq) 0.57 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.59 58
Shewanella amazonensis SB2B 0.40 Sama_0015 recF recombination protein F (RefSeq) 0.57 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.48 23
Shewanella loihica PV-4 0.39 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.56 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.45 39
Pectobacterium carotovorum WPP14 0.39 HER17_RS00015 DNA replication/repair protein RecF 0.55 HER17_RS21395 ATP-dependent DNA helicase RecG low > 75
Serratia liquefaciens MT49 0.39 IAI46_00015 DNA replication/repair protein RecF 0.55 IAI46_24905 ATP-dependent DNA helicase RecG 0.75 5
Dickeya dadantii 3937 0.38 DDA3937_RS21285 DNA replication/repair protein RecF 0.55 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Dickeya dianthicola ME23 0.38 DZA65_RS00015 DNA replication/repair protein RecF 0.55 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Rahnella sp. WP5 0.38 EX31_RS05975 DNA replication/repair protein RecF 0.55 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Dickeya dianthicola 67-19 0.38 HGI48_RS00015 DNA replication/repair protein RecF 0.55 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Escherichia coli Nissle 1917 0.38 ECOLIN_RS21310 DNA replication/repair protein RecF 0.55 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.71 3
Escherichia fergusonii Becca 0.38 EFB2_00003 DNA replication and repair protein RecF 0.55 EFB2_00136 ATP-dependent DNA helicase RecG 0.35 56
Escherichia coli BW25113 0.38 b3700 recF recombination protein F (NCBI) 0.55 b3652 recG ATP-dependent DNA helicase (NCBI) 0.49 16
Escherichia coli ECOR27 0.38 NOLOHH_07165 recF DNA replication/repair protein RecF 0.55 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.66 15
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_00003 DNA replication and repair protein RecF 0.55 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.42 8
Escherichia coli ECRC98 0.38 JDDGAC_18645 recF DNA replication/repair protein RecF 0.55 JDDGAC_19170 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli ECRC99 0.38 KEDOAH_13125 recF DNA replication/repair protein RecF 0.55 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC101 0.38 MCAODC_05535 recF DNA replication/repair protein RecF 0.55 MCAODC_06055 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli ECRC100 0.38 OKFHMN_15025 recF DNA replication/repair protein RecF 0.55 OKFHMN_15545 recG ATP-dependent DNA helicase RecG low > 79
Escherichia coli ECRC102 0.38 NIAGMN_12780 recF DNA replication/repair protein RecF 0.55 NIAGMN_13305 recG ATP-dependent DNA helicase RecG low > 80
Escherichia coli BL21 0.38 ECD_03583 gap repair protein 0.55 ECD_03509 ATP-dependent DNA helicase 0.90 1
Escherichia coli ECRC62 0.38 BNILDI_04365 recF DNA replication/repair protein RecF 0.55 BNILDI_04090 recG ATP-dependent DNA helicase RecG low > 75
Escherichia coli ECOR38 0.38 HEPCGN_13720 recF DNA replication/repair protein RecF 0.55 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.86 3
Enterobacter asburiae PDN3 0.37 EX28DRAFT_3987 DNA replication and repair protein RecF 0.55 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_00065 DNA replication and repair protein RecF 0.54 CSW01_13680 DNA helicase RecG low > 62
Klebsiella pneumoniae MKP103 0.37 KDGMDA_08670 DNA replication/repair protein RecF 0.56 KDGMDA_08135 ATP-dependent DNA helicase RecG 0.42 27
Enterobacter sp. TBS_079 0.37 MPMX20_00003 DNA replication and repair protein RecF 0.54 MPMX20_00084 ATP-dependent DNA helicase RecG 0.41 5
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF1756 DNA recombination and repair protein RecF 0.55 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.54 46
Pantoea sp. MT58 0.37 IAI47_00015 DNA replication/repair protein RecF 0.55 IAI47_00500 ATP-dependent DNA helicase RecG 0.39 11
Klebsiella michiganensis M5al 0.37 BWI76_RS00010 DNA replication and repair protein RecF 0.55 BWI76_RS27440 DNA helicase RecG low > 92
Marinobacter adhaerens HP15 0.36 HP15_3705 DNA replication and repair protein recF 0.60 HP15_309 DNA helicase, ATP-dependent, RecG 0.55 5
Erwinia amylovora T8 0.36 OLJFJH_05150 DNA replication/repair protein RecF 0.54 OLJFJH_05550 ATP-dependent DNA helicase RecG low > 58
Erwinia tracheiphila SCR3 0.36 LU632_RS00015 recF DNA replication/repair protein RecF 0.56 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 73
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS19305 DNA replication/repair protein RecF 0.56 PagCFBP13505_RS18845 ATP-dependent DNA helicase RecG low > 74
Erwinia tracheiphila HP pepo 2.2 0.36 IJEDHG_09800 recF DNA replication/repair protein RecF 0.56 IJEDHG_08345 recG ATP-dependent DNA helicase RecG low > 61
Alteromonas macleodii MIT1002 0.35 MIT1002_00003 DNA replication and repair protein RecF 0.57 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0366 DNA replication and repair protein RecF 0.50 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.51 17
Acinetobacter radioresistens SK82 0.30 MPMX26_00003 DNA replication and repair protein RecF 0.55 MPMX26_02732 ATP-dependent DNA helicase RecG low > 36
Acinetobacter baumannii LAC-4 0.30 RR41_RS00015 DNA replication/repair protein RecF 0.55 RR41_RS02075 ATP-dependent DNA helicase RecG — —
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS08475 DNA replication/repair protein RecF 0.56 LRK54_RS11805 ATP-dependent DNA helicase RecG low > 59
Rhodanobacter denitrificans MT42 0.28 LRK55_RS08240 DNA replication/repair protein RecF 0.56 LRK55_RS11530 ATP-dependent DNA helicase RecG low > 63
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_15255 recF DNA replication/repair protein RecF 0.54 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 53
Rhodanobacter sp000427505 FW510-R12 0.27 LRK53_RS00015 DNA replication/repair protein RecF 0.57 LRK53_RS16735 ATP-dependent DNA helicase RecG 0.34 35
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS15145 DNA replication/repair protein RecF 0.55 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.75 9
Lysobacter sp. OAE881 0.25 ABIE51_RS00765 DNA replication/repair protein RecF 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG low > 62
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.52 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 74
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.33 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_1156 recF protein 0.31 Echvi_1162 ATP-dependent DNA helicase RecG 0.87 8
Fusobacterium nucleatum SB010 0.17 HUW76_00025 DNA replication/repair protein RecF 0.35 HUW76_01465 ATP-dependent DNA helicase RecG — —
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.34 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS24760 DNA replication and repair protein RecF 0.33 CA265_RS22835 ATP-dependent DNA helicase RecG 0.81 9
Bacteroides thetaiotaomicron VPI-5482 0.16 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.35 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG low > 67
Rhizobium sp. OAE497 0.16 ABIE40_RS00200 DNA replication/repair protein RecF 0.35 ABIE40_RS09300 ATP-dependent DNA helicase RecG low > 107
Agrobacterium fabrum C58 0.16 Atu0073 recF-like protein 0.34 Atu1780 ATP-dependent DNA helicase 0.58 4
Phocaeicola dorei CL03T12C01 0.15 ABI39_RS13135 DNA replication and repair protein RecF 0.35 ABI39_RS02470 ATP-dependent DNA helicase RecG low > 72
Cellulophaga baltica 18 0.15 M666_RS11055 DNA replication and repair protein RecF 0.34 M666_RS15340 ATP-dependent DNA helicase RecG low > 67
Azospirillum sp. SherDot2 0.15 MPMX19_02716 DNA replication and repair protein RecF 0.33 MPMX19_00951 ATP-dependent DNA helicase RecG — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.32 ABZR88_RS17240 ATP-dependent DNA helicase RecG low > 71
Bosea sp. OAE506 0.15 ABIE41_RS04170 DNA replication/repair protein RecF 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG low > 77
Sinorhizobium meliloti 1021 0.15 SMc02863 recombination protein F 0.34 SMc00228 ATP-dependent DNA helicase RecG 0.77 4
Sphingomonas koreensis DSMZ 15582 0.13 Ga0059261_2727 DNA replication and repair protein RecF 0.33 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) — —
Sphingobium sp. HT1-2 0.13 GFF730 DNA recombination and repair protein RecF 0.34 GFF3604 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 95
Azospirillum brasilense Sp245 0.13 AZOBR_RS17670 recombinase RecF 0.34 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.36 87
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_17475 DNA replication and repair protein RecF 0.33 CA264_15020 DNA helicase RecG 0.57 15
Magnetospirillum magneticum AMB-1 0.12 AMB_RS03285 DNA replication and repair protein RecF 0.35 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Rhodopseudomonas palustris CGA009 0.12 TX73_000015 DNA replication/repair protein RecF 0.31 TX73_013795 ATP-dependent DNA helicase RecG low > 86
Xanthobacter sp. DMC5 0.12 GFF3876 DNA replication and repair protein RecF 0.29 GFF630 ATP-dependent DNA helicase RecG — —
Dinoroseobacter shibae DFL-12 0.11 Dshi_3375 SMC domain protein (RefSeq) 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.68 11
Phaeobacter inhibens DSM 17395 0.11 PGA1_c00030 DNA replication and repair protein RecF 0.32 PGA1_c14380 ATP-dependent DNA helicase RecG 0.49 12
Caulobacter crescentus NA1000 0.11 CCNA_00158 DNA replication and repair protein recF 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 66
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_00158 DNA replication and repair protein recF 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 67
Mycobacterium tuberculosis H37Rv 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.24 Rv2973c Probable ATP-dependent DNA helicase RecG low > 58
Rhodospirillum rubrum S1H 0.10 Rru_A0003 RecF protein (NCBI) 0.29 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.10 A4249_RS15360 DNA replication/repair protein RecF 0.29 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Synechococcus elongatus PCC 7942 0.09 Synpcc7942_2250 recF recombination protein F 0.34 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG — —

Not shown: 3 genomes with orthologs for Psyr_0003 only; 20 genomes with orthologs for Psyr_0201 only