Conservation of cofitness between Pf6N2E2_5159 and Pf6N2E2_4121 in Pseudomonas fluorescens FW300-N2E2

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_5159 glutamyl-Q-tRNA synthetase 1.0 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.32 7
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_16090 glutamyl-Q tRNA(Asp) ligase 0.99 AO356_11275 16S rRNA methyltransferase low > 104
Pseudomonas sp. RS175 0.91 PFR28_03715 Glutamyl-Q tRNA(Asp) synthetase 0.92 PFR28_04663 Ribosomal RNA small subunit methyltransferase B low > 88
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_2861 glutamyl-Q-tRNA synthetase 0.90 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_14415 glutamyl-Q tRNA(Asp) ligase 0.91 AO353_10630 16S rRNA methyltransferase low > 101
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_1527 glutamyl-Q-tRNA synthetase 0.88 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Pseudomonas simiae WCS417 0.85 PS417_23880 glutamyl-Q tRNA(Asp) ligase 0.89 PS417_00085 16S rRNA methyltransferase low > 88
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.89 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas fluorescens SBW25 0.85 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.89 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas sp. S08-1 0.83 OH686_17275 glutamyl-queuosine tRNA(Asp) synthetase 0.73 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.83 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.83 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas stutzeri RCH2 0.78 Psest_1002 glutamyl-queuosine tRNA(Asp) synthetase 0.80 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB low > 67
Pseudomonas putida KT2440 0.74 PP_4694 Glutamyl-Q tRNA(Asp) synthetase 0.85 PP_0066 Ribosomal RNA small subunit methyltransferase B low > 96
Escherichia coli ECOR27 0.48 NOLOHH_02695 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.45 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli BW25113 0.48 b0144 yadB glutamyl-Q tRNA(Asp) synthetase (RefSeq) 0.45 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_03518 Glutamyl-Q tRNA(Asp) synthetase 0.45 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B low > 73
Escherichia coli BL21 0.48 ECD_00143 glutamyl-Q tRNA(Asp) synthetase 0.45 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent low > 61
Escherichia coli ECOR38 0.47 HEPCGN_08300 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.45 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.55 85
Escherichia coli ECRC62 0.47 BNILDI_08975 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.45 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli Nissle 1917 0.47 ECOLIN_RS00795 tRNA glutamyl-Q(34) synthetase GluQRS 0.45 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 55
Escherichia coli ECRC101 0.47 MCAODC_00865 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.45 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli ECRC98 0.47 JDDGAC_13945 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.45 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Escherichia coli ECRC102 0.47 NIAGMN_08200 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.45 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC99 0.47 KEDOAH_17805 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.45 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia fergusonii Becca 0.47 EFB2_03900 Glutamyl-Q tRNA(Asp) synthetase 0.45 EFB2_00535 Ribosomal RNA small subunit methyltransferase B low > 86
Escherichia coli ECRC100 0.47 OKFHMN_10350 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.45 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF88 glutamyl-Q-tRNA synthetase 0.45 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Serratia liquefaciens MT49 0.46 IAI46_21215 tRNA glutamyl-Q(34) synthetase GluQRS 0.46 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Enterobacter sp. TBS_079 0.46 MPMX20_00830 Glutamyl-Q tRNA(Asp) synthetase 0.45 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Dickeya dianthicola 67-19 0.46 HGI48_RS16055 tRNA glutamyl-Q(34) synthetase GluQRS 0.44 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 71
Rahnella sp. WP5 0.45 EX31_RS03255 tRNA glutamyl-Q(34) synthetase GluQRS 0.46 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 89
Dechlorosoma suillum PS 0.45 Dsui_1040 glutamyl-queuosine tRNA(Asp) synthetase 0.34 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB low > 51
Dickeya dianthicola ME23 0.45 DZA65_RS17140 tRNA glutamyl-Q(34) synthetase GluQRS 0.44 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Pectobacterium carotovorum WPP14 0.45 HER17_RS05575 tRNA glutamyl-Q(34) synthetase GluQRS 0.43 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Enterobacter asburiae PDN3 0.44 EX28DRAFT_3733 glutamyl-queuosine tRNA(Asp) synthetase 0.45 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 76
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS00575 tRNA glutamyl-Q(34) synthetase GluQRS 0.37 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Dickeya dadantii 3937 0.44 DDA3937_RS15940 tRNA glutamyl-Q(34) synthetase GluQRS 0.44 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_0057 glutamyl-queuosine tRNA(Asp) synthetase 0.37 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB low > 40
Erwinia tracheiphila SCR3 0.44 LU632_RS20085 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.43 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Acinetobacter radioresistens SK82 0.43 MPMX26_00176 Glutamyl-Q tRNA(Asp) synthetase 0.37 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B low > 36
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2261.1 glutamyl-Q-tRNA synthetase 0.31 Xcc-8004.4741.1 hypothetical protein low > 74
Klebsiella michiganensis M5al 0.43 BWI76_RS05010 tRNA glutamyl-Q synthetase 0.45 BWI76_RS25680 16S rRNA m5C967 methyltransferase low > 92
Pantoea sp. MT58 0.43 IAI47_15640 tRNA glutamyl-Q(34) synthetase GluQRS 0.46 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Lysobacter sp. OAE881 0.42 ABIE51_RS13520 tRNA glutamyl-Q(34) synthetase GluQRS 0.37 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_03150 tRNA glutamyl-Q(34) synthetase GluQRS 0.47 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Shewanella oneidensis MR-1 0.42 SO0873 glutamyl-tRNA synthetase domain protein (NCBI ptt file) 0.40 SO0030 sun sun protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.42 Sama_0779 glutamyl-tRNA synthetase domain-containing protein (RefSeq) 0.41 Sama_0041 sun protein (RefSeq) low > 62
Marinobacter adhaerens HP15 0.42 HP15_331 glutamyl-Q tRNA(Asp) synthetase 0.42 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase low > 73
Shewanella sp. ANA-3 0.41 Shewana3_3405 glutamyl-tRNA synthetase, class Ic (RefSeq) 0.41 Shewana3_0033 sun protein (RefSeq) low > 73
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS24480 tRNA glutamyl-Q(34) synthetase GluQRS 0.28 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 153
Shewanella loihica PV-4 0.41 Shew_3130 glutamate--tRNA ligase (RefSeq) 0.41 Shew_3738 sun protein (RefSeq) low > 60
Rhodanobacter denitrificans MT42 0.41 LRK55_RS14535 tRNA glutamyl-Q(34) synthetase GluQRS 0.32 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 63
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_03640 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.36 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 52
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS14820 tRNA glutamyl-Q(34) synthetase GluQRS 0.33 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 59
Paraburkholderia graminis OAS925 0.41 ABIE53_001439 glutamyl-Q tRNA(Asp) synthetase 0.28 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_00309 glutamyl-Q tRNA(Asp) synthetase 0.28 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase low > 103
Synechococcus elongatus PCC 7942 0.40 Synpcc7942_0922 gltX Glutamate--tRNA ligase 0.24 Synpcc7942_0962 sun sun protein low > 38
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS15535 tRNA glutamyl-Q(34) synthetase GluQRS 0.33 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS06160 glutamyl-Q tRNA(Asp) ligase 0.28 BPHYT_RS01475 16S rRNA methyltransferase low > 109
Alteromonas macleodii MIT1002 0.39 MIT1002_03691 Glutamyl-Q tRNA(Asp) synthetase 0.37 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B low > 70
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS03645 tRNA glutamyl-Q(34) synthetase GluQRS 0.30 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Ralstonia solanacearum UW163 0.38 UW163_RS10025 tRNA glutamyl-Q(34) synthetase GluQRS 0.30 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS14805 glutamyl-Q tRNA(Asp) ligase 0.26 RR42_RS20450 16S rRNA methyltransferase low > 128
Castellaniella sp019104865 MT123 0.38 ABCV34_RS12295 glutamyl-Q tRNA(Asp) synthetase 0.32 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 48
Ralstonia solanacearum PSI07 0.37 RPSI07_RS13585 tRNA glutamyl-Q(34) synthetase GluQRS 0.32 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 81
Acidovorax sp. GW101-3H11 0.37 Ac3H11_4162 glutamyl-Q-tRNA synthetase 0.26 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 79
Ralstonia solanacearum GMI1000 0.37 RS_RS11090 tRNA glutamyl-Q(34) synthetase GluQRS 0.29 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF5183 glutamyl-Q-tRNA synthetase 0.29 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 90
Variovorax sp. OAS795 0.35 ABID97_RS18025 tRNA glutamyl-Q(34) synthetase GluQRS 0.25 ABID97_RS05360 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 91
Phaeobacter inhibens DSM 17395 0.26 PGA1_c14410 putative glutamyl-tRNA synthetase 0.19 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B low > 62
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_02288 tRNA synthetase class I, catalytic domain protein 0.21 CCNA_00101 16S rRNA m5C methyltransferase RsmB low > 67
Caulobacter crescentus NA1000 0.24 CCNA_02288 tRNA synthetase class I, catalytic domain protein 0.21 CCNA_00101 16S rRNA m5C methyltransferase RsmB low > 66
Dinoroseobacter shibae DFL-12 0.24 Dshi_1474 glutamyl-tRNA synthetase class Ic (RefSeq) 0.19 Dshi_3033 Fmu (Sun) domain protein (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.24 Rru_A3734 Glutamyl-tRNA synthetase, class Ic (NCBI) 0.20 Rru_A3660 tRNA and rRNA cytosine-C5-methylase (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.23 TX73_024705 tRNA glutamyl-Q(34) synthetase GluQRS 0.20 TX73_000155 transcription antitermination factor NusB low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS11885 tRNA glutamyl-Q(34) synthetase GluQRS 0.18 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 48
Sinorhizobium meliloti 1021 0.22 SMc00735 glutamyl-Q tRNA(Asp) synthetase 0.20 SMc04090 sun protein low > 103
Rhizobium sp. OAE497 0.20 ABIE40_RS17470 tRNA glutamyl-Q(34) synthetase GluQRS 0.20 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 107

Not shown: 4 genomes with orthologs for Pf6N2E2_5159 only; 8 genomes with orthologs for Pf6N2E2_4121 only